BAC Information

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BAC

Clone NameB6Ng01-049H19
Chromosome5 (Build37)
Map Location 142,769,626 - 142,883,226
singlet/doubletdoublet
Overlap geneFoxk1
Upstream geneSdk1, LOC666727
Downstream geneC330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H19.bB6Ng01-049H19.g
ACCDH873735DH873736
length741568
definitionDH873735|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H19, 5' end.DH873736|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,769,626 - 142,770,363)(142,882,657 - 142,883,226)
sequence
gaattcattgaaatttaattcttgtaagatattataagaattaagccagg
tgggacctttaaaaggtgaatagtactctgacctcttgaatggatcaatc
cacttacacatttattggattagtaggctatggggttatctaaggagtga
ttctgagtgaaataacttgcctggctgggtagttcacatatccctcctct
cttgttcatggtttaccttgaatcagaacataaatccaaataaacccttt
ctctctataactctataacttaagcagtctgtggtattgtgttacagcaa
tagaaaatacagaagtgtccaaagcccattactgagaagagcagtgatcc
tgaagatgatcctagaaggtcatgggcactgtctgggactttttttaaag
caatgggagccctggataaaagtatccagcaagtgggggcacactaacag
ctggagttcacagcagatgtaggcttcaaaggctgtagctggcatagaag
aggtcttaaaaatcaaaatggaccagctgtggtggtgcacacctttagtg
aaagcgcttgagaggcagaggcaggcagtgagttagaagcctgcctaaac
tacatagtaagtcccaggccaagccagggatacagagtgagaccctgtct
caaaaggtgcatacacatgtgtgcacacacacacacacagatctgagtct
gataaaatttgtgtgtgtgtgtgtgtgcacacgtgtgtgtg
gaattcagtcttatgaggagttgtggaaacttctggggacaaatgaccct
gttccttcaaacacatcactcagcgagctgagcgagagggagacgcatgg
aaggttggataggaatcctccagggctagggaggggcgtggcttagtggg
gacactgcttactgtataaacatgaggacctgagttcggtcggtccggaa
agacttggtaaaaaccagggtggccttgtgatctcagtacagagagagga
cggcccctcggacccaaaagtcaggctagcctgactgatgagctccaggt
tccagggtctgtgagagaccctgtccaaaaagaaaaagatgaggaggacg
agggtgagaacgaggacgaagacgaggaggacgctcctaaggaacgacag
ccaaaggtgacctgtcccccttactcatacacgtggtgcactggtgcccc
atttacagacacaaggattcacttgcacacaagaaacagaagacagacag
acagcctatgactttgattctagtcactccagggtgagaccttctggggc
atggaactgatgggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142769626_142770363
seq2: B6Ng01-049H19.b_30_771

seq1  GGAATTCATTGAAATTTAATTCTTGTAAGATATTATAAGAATTAAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATTGAAATTTAATTCTTGTAAGATATTATAAGAATTAAGCCAG  50

seq1  GTGGGACCTTTAAAAGGTGAATAGTACTCTGACCTCTTGAATGGATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCTTTAAAAGGTGAATAGTACTCTGACCTCTTGAATGGATCAAT  100

seq1  CCACTTACACATTTATTGGATTAGTAGGCTATGGGGTTATCTAAGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACACATTTATTGGATTAGTAGGCTATGGGGTTATCTAAGGAGTG  150

seq1  ATTCTGAGTGAAATAACTTGCCTGGCTGGGTAGTTCACATATCCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTGAAATAACTTGCCTGGCTGGGTAGTTCACATATCCCTCCTC  200

seq1  TCTTGTTCATGGTTTACCTTGAATCAGAACATAAATCCAAATAAACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCATGGTTTACCTTGAATCAGAACATAAATCCAAATAAACCCTT  250

seq1  TCTCTCTATAACTCTATAACTTAAGCAGTCTGTGGTATTGTGTTACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATAACTCTATAACTTAAGCAGTCTGTGGTATTGTGTTACAGCA  300

seq1  ATAGAAAATACAGAAGTGTCCAAAGCCCATTACTGAGAAGAGCAGTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATACAGAAGTGTCCAAAGCCCATTACTGAGAAGAGCAGTGATC  350

seq1  CTGAAGATGATCCTAGAAGGTCATGGGCACTGTCTGGGACTTTTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATGATCCTAGAAGGTCATGGGCACTGTCTGGGACTTTTTTTAAA  400

seq1  GCAATGGGAGCCCTGGATAAAAGTATCCAGCAAGTGGGGGCACACTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGAGCCCTGGATAAAAGTATCCAGCAAGTGGGGGCACACTAACA  450

seq1  GCTGGAGTTCACAGCAGATGTAGGCTTCAAAGGCTGTAGCTGGCATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTCACAGCAGATGTAGGCTTCAAAGGCTGTAGCTGGCATAGAA  500

seq1  GAGGTCTTAAAAATCAAAATGGACCAGCTGTGGTGGTGCACACCTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTAAAAATCAAAATGGACCAGCTGTGGTGGTGCACACCTTTAGT  550

seq1  GAAAGCGCTTGAGAGGCAGAGGCAGGCAGTGAGTTAGAAGCCTGCCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGCTTGAGAGGCAGAGGCAGGCAGTGAGTTAGAAGCCTGCCTAAA  600

seq1  CTACATAGTAAGTCCCAGGCCAAGCCAGGGATACAGAGTGAGACCCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTAAGTCCCAGGCCAAGCCAGGGATACAGAGTGAGACCCTGTC  650

seq1  TCAAAAGGTGCATACACATGTGTGCACACACACACACACAGATCTGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGTGCATACACATGTGTGCACACACACACACACAGATCTGAGTC  700

seq1  TGATAAAATTTGTGTGTGTGTGTGTGTG----TGTGTGTGTG  738
      ||||||||||||||||||||||||||||     |||||||||
seq2  TGATAAAATTTGTGTGTGTGTGTGTGTGCACACGTGTGTGTG  742

seq1: chr5_142882657_142883226
seq2: B6Ng01-049H19.g_68_635 (reverse)

seq1  AGCACCCACTCAGCTCCACTGCCCCATGAAGGTCTCACCCTGGAGTGACT  50
      |||||||| |||| |||| ||||||| |||||||||||||||||||||||
seq2  AGCACCCA-TCAGTTCCA-TGCCCCA-GAAGGTCTCACCCTGGAGTGACT  47

seq1  AGAATCAAAGTCATAGGCTGTCTGTCTGTCTTCTGTCTCTTGTGTGCATG  100
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AGAATCAAAGTCATAGGCTGTCTGTCTGTCTTCTGTTTCTTGTGTGCAAG  97

seq1  TGAGTCCTTGTGTCTGTATATGGGGCACATGTGCA-CACGTGTATGAGTA  149
      ||| |||||||||||||| |||||||||  ||||| ||||||||||||||
seq2  TGAATCCTTGTGTCTGTAAATGGGGCACCAGTGCACCACGTGTATGAGTA  147

seq1  AGGGGGACAGGTCACCTTTGGCTGTCGTTCCTTAGGAGCGTCCTCCTCGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACAGGTCACCTTTGGCTGTCGTTCCTTAGGAGCGTCCTCCTCGT  197

seq1  CTTCGTCCTCGTTCTCACCCTCGTCCTCCTCATCTTTTTCTTTTTGGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCCTCGTTCTCACCCTCGTCCTCCTCATCTTTTTCTTTTTGGACA  247

seq1  GGGTCTCTCACAGACCCTGGAACCTGGAGCTCATCAGTCAGGCTAGCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCACAGACCCTGGAACCTGGAGCTCATCAGTCAGGCTAGCCTG  297

seq1  ACTTTTGGGTCCGAGGGGCCGTCCTCTCTCTGTACTGAGATCACAAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGGTCCGAGGGGCCGTCCTCTCTCTGTACTGAGATCACAAGGCC  347

seq1  ACCCTGGTTTTTACCAAGTCTTTCCGGACCGACCGAACTCAGGTCCTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGTTTTTACCAAGTCTTTCCGGACCGACCGAACTCAGGTCCTCAT  397

seq1  GTTTATACAGTAAGCAGTGTCCCCACTAAGCCACGCCCCTCCCTAGCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACAGTAAGCAGTGTCCCCACTAAGCCACGCCCCTCCCTAGCCCT  447

seq1  GGAGGATTCCTATCCAACCTTCCATGCGTCTCCCTCTCGCTCAGCTCGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCCTATCCAACCTTCCATGCGTCTCCCTCTCGCTCAGCTCGCT  497

seq1  GAGTGATGTGTTTGAAGGAACAGGGTCATTTGTCCCCAGAAGTTTCCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGTGTTTGAAGGAACAGGGTCATTTGTCCCCAGAAGTTTCCACA  547

seq1  ACTCCTCATAAGACTGAATTC  570
      |||||||||||||||||||||
seq2  ACTCCTCATAAGACTGAATTC  568