BAC Information

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BAC

Clone NameB6Ng01-049L24
Chromosome5 (Build37)
Map Location 144,095,801 - 144,246,466
singlet/doubletdoublet
Overlap geneGrid2ip, Kdelr2, LOC231869, LOC670671, Daglb
Upstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4
Downstream geneRac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L24.bB6Ng01-049L24.g
ACCDH873922DH873923
length6331,112
definitionDH873922|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L24, 5' end.DH873923|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,245,927 - 144,246,466)(144,095,801 - 144,096,919)
sequence
gaattcttagactaagagggatgtgagggcagcaggcagagcagaacccc
ataacagcacgaagccctcagaacttcatggacacatggtcctcggaacc
gtgccacgccgaggctcactcacgtggcggtggtaagctgtgggctgcat
ccacgatctaaagccatctgccgttcctctgcatggccctcggcactctg
actgggtctctctctatcctcctgcctcagcctctcaaaggttgggatta
tgagcacacaccaccatacttggcaatttcagaagttatgtgtggaggct
gtgtgtgtgcatgtgcgtgtcaatgcatgtgtgaagcaactggaagacaa
cttgagggagctcattctccttctactgtatagatgccaggaactgaacg
tggcttctcaggcctggaggcagatgcctttacccactgagccacctcgc
cagcccaactatagaactcttcctaaaagttctgccaaaacactctgtga
accacagagtctgaaaacagttgcacgccaccagtagcggttacagaggt
taaccacacaaaagaggttagagagcaactaagtaatgctaaccacagac
tttcaagcgggtaggcaagctttctgtgtgtgt
gaattcactttttggaatttgcacttgtctttgcttctgcgatggcttcg
ctgtgcttaggaacctcaaatctccactttgggactcattttggactgtt
cctaagctgtatagctctctgttttgagtacttttgtgtagcagtgactt
gctggagacgacgtaagcaagggaggatgtgtttgaggtttcagagggtt
cagtgcatagctgcttggctccatgcacttgggtagaacaccatggtggt
gggattgtttcgcagaaggtgggtgttacttggcaatggttgaccgggag
cagaaaacgagacaaggaagggacttggtatggaaatagtgtccccagct
gggtccaagtaatcaaaacacgaaccctgtggaacacatactagttttca
ttgtcagcttgtttgcatttggaatcacccgggagacacacctctgggta
tccatgacaacactacacagtttaacagaggcaggaagacccgctcagta
tgggcatggtgatgctgtggggctgggtctttggaaagtgagctgaaaac
cagtgtttgcctctggccgtcctgaccacagatgcaatgtgttcaaccgt
ctcaaactcgaccaccataacttcctgaatcaaacgcctataaaaataaa
ccctaagggctggagagatgactccacgggcaaagagcttgctgcataag
cgcgaggacaggagtttgaatccccgtataatgccaggtgggcatggaaa
cacatgaatgcacaaacggcagctcctcccccactccacatccccagcat
gctgatcagcaggttctggctacaactgagagattctatatgtgagacag
agagtaattagggaaaacactggacactaacattcggttcacacacacac
acacacacatatttacacatgttctcactgacataaaacaaaaactaaca
gcacttacttaagtctcatctgccaggtattctccacagcagtgagagag
tgaactaacacttttgaccgtgatgggttccggcccccttagagtctgct
tcgggactgacaaaaggatgttcctccagaaacacagaatggaaatattt
gcttggaactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144245927_144246466
seq2: B6Ng01-049L24.b_136_675 (reverse)

seq1  ACACACACAGAAAGCTTGCCTACCCGCTTGAAAGTCTGTGGTTAGCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGAAAGCTTGCCTACCCGCTTGAAAGTCTGTGGTTAGCATTA  50

seq1  CTTAGTTGCTCTCTAACCTCTTTTGTGTGGTTAACCTCTGTAACCGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGCTCTCTAACCTCTTTTGTGTGGTTAACCTCTGTAACCGCTAC  100

seq1  TGGTGGCGTGCAACTGTTTTCAGACTCTGTGGTTCACAGAGTGTTTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGTGCAACTGTTTTCAGACTCTGTGGTTCACAGAGTGTTTTGGC  150

seq1  AGAACTTTTAGGAAGAGTTCTATAGTTGGGCTGGCGAGGTGGCTCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTAGGAAGAGTTCTATAGTTGGGCTGGCGAGGTGGCTCAGTGG  200

seq1  GTAAAGGCATCTGCCTCCAGGCCTGAGAAGCCACGTTCAGTTCCTGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCATCTGCCTCCAGGCCTGAGAAGCCACGTTCAGTTCCTGGCAT  250

seq1  CTATACAGTAGAAGGAGAATGAGCTCCCTCAAGTTGTCTTCCAGTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGTAGAAGGAGAATGAGCTCCCTCAAGTTGTCTTCCAGTTGCTT  300

seq1  CACACATGCATTGACACGCACATGCACACACACAGCCTCCACACATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCATTGACACGCACATGCACACACACAGCCTCCACACATAACT  350

seq1  TCTGAAATTGCCAAGTATGGTGGTGTGTGCTCATAATCCCAACCTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTGCCAAGTATGGTGGTGTGTGCTCATAATCCCAACCTTTGAG  400

seq1  AGGCTGAGGCAGGAGGATAGAGAGAGACCCAGTCAGAGTGCCGAGGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGCAGGAGGATAGAGAGAGACCCAGTCAGAGTGCCGAGGGCCA  450

seq1  TGCAGAGGAACGGCAGATGGCTTTAGATCGTGGATGCAGCCCACAGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGAACGGCAGATGGCTTTAGATCGTGGATGCAGCCCACAGCTTA  500

seq1  CCACCGCCACGTGAGTGAGCCTCGGCGTGGCACGGTTCCG  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGCCACGTGAGTGAGCCTCGGCGTGGCACGGTTCCG  540

seq1: chr5_144095801_144096919
seq2: B6Ng01-049L24.g_67_1178

seq1  GAATTCACTTTTTGGAATTTGCACTTGTCTTTGCTTCTGCGATGGCTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTGGAATTTGCACTTGTCTTTGCTTCTGCGATGGCTTCG  50

seq1  CTGTGCTTAGGAACCTCAAATCTCCACTTTGGGACTCATTTTGGACTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTAGGAACCTCAAATCTCCACTTTGGGACTCATTTTGGACTGTT  100

seq1  CCTAAGCTGTATAGCTCTCTGTTTTGAGTACTTTTGTGTAGCAGTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTGTATAGCTCTCTGTTTTGAGTACTTTTGTGTAGCAGTGACTT  150

seq1  GCTGGAGACGACGTAAGCAAGGGAGGATGTGTTTGAGGTTTCAGAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGACGACGTAAGCAAGGGAGGATGTGTTTGAGGTTTCAGAGGGTT  200

seq1  CAGTGCATAGCTGCTTGGCTCCATGCACTTGGGTAGAACACCATGGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATAGCTGCTTGGCTCCATGCACTTGGGTAGAACACCATGGTGGT  250

seq1  GGGATTGTTTCGCAGAAGGTGGGTGTTACTTGGCAATGGTTGACCGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTTTCGCAGAAGGTGGGTGTTACTTGGCAATGGTTGACCGGGAG  300

seq1  CAGAAAACGAGACAAGGAAGGGACTTGGTATGGAAATAGTGTCCCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACGAGACAAGGAAGGGACTTGGTATGGAAATAGTGTCCCCAGCT  350

seq1  GGGTCCAAGTAATCAAAACACGAACCCTGTGGAACACATACTAGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAAGTAATCAAAACACGAACCCTGTGGAACACATACTAGTTTTCA  400

seq1  TTGTCAGCTTGTTTGCATTTGGAATCACCCGGGAGACACACCTCTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCTTGTTTGCATTTGGAATCACCCGGGAGACACACCTCTGGGTA  450

seq1  TCCATGACAACACTACACAGTTTAACAGAGGCAGGAAGACCCGCTCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACAACACTACACAGTTTAACAGAGGCAGGAAGACCCGCTCAGTA  500

seq1  TGGGCATGGTGATGCTGTGGGGCTGGGTCTTTGGAAAGTGAGCTGAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGATGCTGTGGGGCTGGGTCTTTGGAAAGTGAGCTGAAAAC  550

seq1  CAGTGTTTGCCTCTGGCCGTCCTGACCACAGATGCAATGTGTTCAACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGCCTCTGGCCGTCCTGACCACAGATGCAATGTGTTCAACCGT  600

seq1  CTCAAACTCGACCACCATAACTTCCTGAATCAAACGCCTATAAAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCGACCACCATAACTTCCTGAATCAAACGCCTATAAAAATAAA  650

seq1  CCCTAAGGGCTGGAGAGATGACTCCACGGGCAAAGAGCTTGCTGCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGCTGGAGAGATGACTCCACGGGCAAAGAGCTTGCTGCATAAG  700

seq1  CGCGAGGACAGGAGTTTGAATCCCCGTATAATGCCAGGTGGGCATGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGACAGGAGTTTGAATCCCCGTATAATGCCAGGTGGGCATGGAAA  750

seq1  CACATGAATGCACAAACGGCAGCTCCTCCCCCACTCCACATCCCCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAATGCACAAACGGCAGCTCCTCCCCCACTCCACATCCCCAGCAT  800

seq1  GCTGATTCAGCAGGTTCTGGCTACAACTGAGAGATTCTATATGTGAGACA  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGA-TCAGCAGGTTCTGGCTACAACTGAGAGATTCTATATGTGAGACA  849

seq1  GAGAGTAATTAGGGAAAACACTGGACACTAACATTCGGTTCACAACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAGTAATTAGGGAAAACACTGGACACTAACATTCGGTTCAC-ACACAC  898

seq1  ACACACACACATATTTACACATGTCCTCACTGACATAAAACAAAAACTAA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACACACACATATTTACACATGTTCTCACTGACATAAAACAAAAACTAA  948

seq1  CAAGCACTTACTTAAGTCTCATCTGCCAGGTATTTCTCAACAGCAGTGAG  1000
      | |||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  C-AGCACTTACTTAAGTCTCATCTGCCAGGTA-TTCTCCACAGCAGTGAG  996

seq1  AGAAGTG-ACTAACACTTTTGACCCTGAGTGTGTCCTGCCCCCCTTAGAG  1049
      || |||| |||||||||||||||| ||| || || | | |||||||||||
seq2  AG-AGTGAACTAACACTTTTGACCGTGA-TGGGTTCCGGCCCCCTTAGAG  1044

seq1  CTCTGCTTC-GGACTGACAAAAAGGTAGTTCCAGCAAGAAACACAGAATG  1098
       |||||||| |||||||| ||||||  |||||  | ||||||||||||||
seq2  -TCTGCTTCGGGACTGAC-AAAAGGATGTTCC-TCCAGAAACACAGAATG  1091

seq1  GAAATATTGGCTGGGAACTCA  1119
      |||||||| ||| ||||||||
seq2  GAAATATTTGCTTGGAACTCA  1112