BAC Information

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BAC

Clone NameB6Ng01-050A04
Chromosome5 (Build37)
Map Location 10,000,901 - 10,124,540
singlet/doubletdoublet
Overlap geneLOC625446, LOC435832
Upstream gene4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3, LOC100042768
Downstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A04.bB6Ng01-050A04.g
ACCDH874090DH874091
length1,1001,159
definitionDH874090|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A04, 5' end.DH874091|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,000,901 - 10,001,676)(10,123,364 - 10,124,540)
sequence
gaattccagagtgtttgtaacatcttgcaatcccatcaccagtggaggag
tgttcctctttctccacatccccaccagcatctgctgtcacctgagtttt
ttatcttatgcattctgactggtatgaggtggaatctaagggttattttg
atttgcatttctctgttgactaaggatgttgaacatttctttaggtgctt
ctcgacaattcaagtttcctcagttgagaattctttgttcagctctgtat
tccattttttaatagggtcatttgactgcctggagtttaatttcttgagt
tctttgtatatattggatattatccctctatttgatgtaggattggtaaa
gatctttcactatttgttggttgctgttttgtcctattgacagtatcctt
tgccttacagaagctttgcaattttatgaagtcctatttgttaattcttg
atcttagagcacaagacattgttctgttcaggaactttccctctgtgccc
atgtacttgaggttttttcccacttactcttcttttagtttcagggtatc
tggttttatgtgggggtcctttatccactgggacttgagctttgtacaag
gagataaaatgggatagatttgcattcttgtacatgctgactgtggtttc
taataaaatatctagagcttgctgaattttatagtctcactaggcagcat
gatccagggactgtctttctttgctttcaccctccaagggcagaaaacag
gcctgttgtaccacatccaaattctggagatatgaattccaacctaagtc
ttccatggcaagtgctctagctgcaaaactttcttcccagacccttagct
ataatgacatcataatattatctatagggcaatacaatttttttttaaat
gagattcaattaaatttttatttctaaaaaatattttataggaattttat
tagatattaatgaaatttatatctaacttgtttgtaatttttaataatat
ataattccataatcctttcccttttgtgcaatctcatcttcttcatgctc
tctcacagtctaacatgtttttctccatggtatttttaatatatgcaaaa

gaattctgagttcaaggccagcctggtctacaaagtgagttccaggacag
ccagggctatacagagaaaccctgtctcaaaaatacaaaaacaaacaaac
aaacaaataaacaagcaaagaaaccctaagactaagacaacctccataga
gatttggattttagaggacagaataaaaactttgatggtgaaaatatcct
tctaatagattttaatagttaattgaattagcatgtcttttattgtttaa
atgaacattccaatactatccctaatttgcatttagattgaccttctctc
ttggtttcgaacatacacacacacacaaatacacacatataaacaaattt
tacttcatttcattgtttagaaaaattaactgtcactactgtttcactca
tatattgaaaagctagctaaacatatagctacactaagtgtagaaataaa
aatttatcagattttatattgattgagtaagcatgaaaaatattttggtt
aaacttcttaaatgccttctttagttactaatattttctcaaagaaagaa
aattgactttttattaattatattacagtaatagaaaatactaaaggaaa
tttgggtttatatgtattctataaggtcatactattgttttaggggctat
gagatctatactgataaacactttaattctaaatgctgttagactgtatt
tctttttgattagctttagctagaatttaataagatgtgttattttgttt
atttgtttttaagaaaaaataggttttattttagctcacagtttaaatta
gactccatcattgctaggaaaccacaccaagaccttaagacaaatgatat
aaacttgagacatcttgtctcagtgcatccacctcaattgttgaaaagca
gagaatattgactaatacgtgagtgtttgtgctccatacactctctaaat
ttatacagttcagaataccttggcttatgaaatagagcaacctaaacata
ataaaagtcatattagcaatcagccatccaataaccatataaattgatta
cgagaaattaagcaatcccttgaaatcaaggacaagaaagcttgacactc
tctctatatattaaataaggaatgactgctagctgagccatagaaactaa
aaatgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10000901_10001676
seq2: B6Ng01-050A04.b_390_1141

seq1  AAGATCTTTCACTATTTGTTGGTTGCTGTTTTGTCCTATTGACAGTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTTCACTATTTGTTGGTTGCTGTTTTGTCCTATTGACAGTATCC  50

seq1  TTTGCCTTACAGAAGCTTTGCAATTTTATGAAGTCCTATTTGTTAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTACAGAAGCTTTGCAATTTTATGAAGTCCTATTTGTTAATTCT  100

seq1  TGATCTTAGAGCACAAGACATTGTTCTGTTCAGGAACTTTCCCTCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAGAGCACAAGACATTGTTCTGTTCAGGAACTTTCCCTCTGTGC  150

seq1  CCATGTACTTGAGGTTTTTTCCCACTTACTCTTCTTTTAGTTTCAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACTTGAGGTTTTTTCCCACTTACTCTTCTTTTAGTTTCAGGGTA  200

seq1  TCTGGTTTTATGTGGGGGTCCTTTATCCACTGGGACTTGAGCTTTGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTATGTGGGGGTCCTTTATCCACTGGGACTTGAGCTTTGTACA  250

seq1  AGGAGATAAAATGGGATAGATTTGCATTCTTGTACATGCTGACTGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAAAATGGGATAGATTTGCATTCTTGTACATGCTGACTGTGGTT  300

seq1  TCTAATAAAATATCTAGAGCTTGCTGAATTTTATAGTCTCACTAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAATATCTAGAGCTTGCTGAATTTTATAGTCTCACTAGGCAGC  350

seq1  ATGATCCAGGGACTGTCTTTCTTTGCTTTCACCCTCCAAGGGCAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCAGGGACTGTCTTTCTTTGCTTTCACCCTCCAAGGGCAGAAAAC  400

seq1  AGGCCTGTTGTACCACATCCAAATTCTGGAGATATGAATTCCAACCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTTGTACCACATCCAAATTCTGGAGATATGAATTCCAACCTAAG  450

seq1  TCTTCCATGGCAAGTGCTCTAGCTGCAAAACTTTCTTCCCAGACCCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGGCAAGTGCTCTAGCTGCAAAACTTTCTTCCCAGACCCTTAG  500

seq1  CTATAATGACATCATAATATTATCTATAGGGCAATACAATTTTTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTATAATGACATCATAATATTATCTATAGGGCAATACAATTTTTTTTT--  548

seq1  AAATGAGATTCAATTAAATTTTTATTTCTAAAATATATTTTATAGAAATT  600
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  AAATGAGATTCAATTAAATTTTTATTTCTAAAAAATATTTTATAGGAATT  598

seq1  TTATTAGATATTAATGAAATTTAATATCTAACTTGTTTGTTATTTTTTAA  650
      |||||||||||||||||||||| ||||||||||||||||| ||||||  |
seq2  TTATTAGATATTAATGAAATTT-ATATCTAACTTGTTTGTAATTTTT--A  645

seq1  TTAATATATAATTCCATTATTCCCTTTCCCTTTTGTCCCCCACTCCTCCC  700
       |||||||||||||||| ||  |||||||||||||| |        || |
seq2  ATAATATATAATTCCATAAT--CCTTTCCCTTTTGTGC------AATCTC  687

seq1  TTCCTTCCTTCATTGCTCTCTCACAAGTTCATAACATGTTTTTCTTCCAA  750
       ||  | ||||| ||||||||||| |||   ||||||||||||| |||| 
seq2  ATC--TTCTTCA-TGCTCTCTCAC-AGT--CTAACATGTTTTTC-TCCAT  730

seq1  TGTTTATATATAATATATATGCAAAA  776
       || | | ||    ||||||||||||
seq2  GGTATTTTTA----ATATATGCAAAA  752

seq1: chr5_10123364_10124540
seq2: B6Ng01-050A04.g_68_1226 (reverse)

seq1  CCTTCATATCTTTTAGTTTTCTTATTGCTCTAGCTAGCAGTTCATGTACT  50
      |||||||   |||||||||   ||| |||| ||||||||| |||| | ||
seq2  CCTTCAT---TTTTAGTTT--CTATGGCTC-AGCTAGCAG-TCAT-TCCT  42

seq1  ATATTTAATATATAGGGAGAGTGTCAAAGCCTTTTCTTGTCCTTGATTTC  100
       |||||||||||||| ||||||||| ||||  ||||||||||||||||||
seq2  -TATTTAATATATAGAGAGAGTGTC-AAGC--TTTCTTGTCCTTGATTTC  88

seq1  AGTGGAATTGCTTTAATTTTCTCTGTATTCAATTTTATATTGGTTATTGG  150
      |  || |||||||  | |||||| ||| |||| |||||| ||||||||||
seq2  A-AGGGATTGCTT--AATTTCTC-GTAATCAA-TTTATA-TGGTTATTGG  132

seq1  ATTGCTGATTGCTATATATGACTTTTATTATGTTTAGGTTGCTCTATTTC  200
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGGCTGATTGCTA-ATATGACTTTTATTATGTTTAGGTTGCTCTATTTC  181

seq1  AT-AGCCAAGGTATTCTGAACTGTATAAATTTAGAGAGTGTATGGAGCAC  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCAAGGTATTCTGAACTGTATAAATTTAGAGAGTGTATGGAGCAC  231

seq1  AAACACTCACGTATTAGTCAATATTCTCTGCTTTTCAACAATTGAGGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCACGTATTAGTCAATATTCTCTGCTTTTCAACAATTGAGGTGG  281

seq1  ATGCACTGAGACAAGATGTCTCAAGTTTATATCATTTGTCTTAAGGTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGAGACAAGATGTCTCAAGTTTATATCATTTGTCTTAAGGTCTT  331

seq1  GGTGTGGTTTCCTAGCAATGATGGAGTCTAATTTAAACTGTGAGCTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTTTCCTAGCAATGATGGAGTCTAATTTAAACTGTGAGCTAAAA  381

seq1  TAAAACCTATTTTTTCTTAAAAACAAATAAACAAAATAACACATCTTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTATTTTTTCTTAAAAACAAATAAACAAAATAACACATCTTATT  431

seq1  AAATTCTAGCTAAAGCTAATCAAAAAGAAATACAGTCTAACAGCATTTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGCTAAAGCTAATCAAAAAGAAATACAGTCTAACAGCATTTAG  481

seq1  AATTAAAGTGTTTATCAGTATAGATCTCATAGCCCCTAAAACAATAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTGTTTATCAGTATAGATCTCATAGCCCCTAAAACAATAGTAT  531

seq1  GACCTTATAGAATACATATAAACCCAAATTTCCTTTAGTATTTTCTATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTATAGAATACATATAAACCCAAATTTCCTTTAGTATTTTCTATTA  581

seq1  CTGTAATATAATTAATAAAAAGTCAATTTTCTTTCTTTGAGAAAATATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATATAATTAATAAAAAGTCAATTTTCTTTCTTTGAGAAAATATTA  631

seq1  GTAACTAAAGAAGGCATTTAAGAAGTTTAACCAAAATATTTTTCATGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAAAGAAGGCATTTAAGAAGTTTAACCAAAATATTTTTCATGCTT  681

seq1  ACTCAATCAATATAAAATCTGATAAATTTTTATTTCTACACTTAGTGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCAATATAAAATCTGATAAATTTTTATTTCTACACTTAGTGTAG  731

seq1  CTATATGTTTAGCTAGCTTTTCAATATATGAGTGAAACAGTAGTGACAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTTAGCTAGCTTTTCAATATATGAGTGAAACAGTAGTGACAGT  781

seq1  TAATTTTTCTAAACAATGAAATGAAGTAAAATTTGTTTATATGTGTGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTAAACAATGAAATGAAGTAAAATTTGTTTATATGTGTGTAT  831

seq1  TTGTGTGTGTGTGTATGTTCGAAACCAAGAGAGAAGGTCAATCTAAATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTATGTTCGAAACCAAGAGAGAAGGTCAATCTAAATGC  881

seq1  AAATTAGGGATAGTATTGGAATGTTCATTTAAACAATAAAAGACATGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGGATAGTATTGGAATGTTCATTTAAACAATAAAAGACATGCTA  931

seq1  ATTCAATTAACTATTAAAATCTATTAGAAGGATATTTTCACCATCAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTAACTATTAAAATCTATTAGAAGGATATTTTCACCATCAAAGT  981

seq1  TTTTATTCTGTCCTCTAAAATCCAAATCTCTATGGAGGTTGTCTTAGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTGTCCTCTAAAATCCAAATCTCTATGGAGGTTGTCTTAGTCT  1031

seq1  TAGGGTTTCTTTGCTTGTTTATTTGTTTGTTTGTTTGTTTTTGTATTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCTTTGCTTGTTTATTTGTTTGTTTGTTTGTTTTTGTATTTTT  1081

seq1  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA  1131

seq1  GACCAGGCTGGCCTTGAACTCAGAATTC  1177
      ||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTTGAACTCAGAATTC  1159