BAC Information

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BAC

Clone NameB6Ng01-050H06
Chromosome5 (Build37)
Map Location 30,235,273 - 30,357,859
singlet/doubletdoublet
Overlap geneLOC100039369, Il6
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
Downstream geneTyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H06.bB6Ng01-050H06.g
ACCDH874392DH874393
length7881,058
definitionDH874392|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H06, 5' end.DH874393|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,235,273 - 30,236,060)(30,356,768 - 30,357,859)
sequence
gaattctttgtttagctcagtaacccattttttaatggggttatttgaat
ttccggagtttagtttcttgagctctttgtatatattggatattagtccc
ctatcagatttagaattggtaaaatcctttcccaatctgttggtggcctt
tttgtcttattgacagtatcttttgccctacagaagctttgcaattttat
gaggtcccatttgttgtttcttgatcttacagcaaaggccattgctgttc
tgtttaggaatttttcccgtgcccatatcttcgagggtttcccccactat
ctcctctataaatttcagtgcctctggttttatgtggaggtctttgatcc
acttagacttgagctttgtacaaggagataagaatggatcaattctgctc
agaataatcttaaagacccagaaacaaacaaacaaacaaacaaacaacca
gaacaataactaaaggagtgcaaggagtgatctaccttttcttggaggca
accagcaagggcctagaccatgcctgagagcaaggactccctaattgtaa
ctgacctaatccttttcagccaaacatgcctcctctgcaggactctgcaa
tccctctgcagcctgcaccaaatgctcagctggactgctgaactacttgt
tttctagggaaatgagctacacactgtggagtgttgccttactagtgggc
ccccatcacataccatattagaatgcccatatggcctttacccagcaaag
aaatcagccaattcatcattatctcctcctcctcctcc
gaattctttgtttagccctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattatttccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttgtcttattgacagtatcttttgccctacagaaagtttgcaattttat
gaggtcccatttgtcgattcttgatcttaatgcacaggccattgctgttc
tgtttaggaacatttcccttgttcccatatcttcgagggttttccccact
ttctcctctataaatttcagtgtctctggttttacgtggagttctttgat
ccacttagactcgagctttggtagagggattctttacagaagtaactgat
gcttgtgaatagcatcccttttccaccctcacatccctttggccaaaaat
attttggacttggaattaccactgtcttcctttgtcctaattttcccact
actcattcgaaagaaaatgaaaagaaaactctctttgtttttagagcaac
acttttggaaccggatttaccagaatcccatggtatgtcttcttccatct
ctgacactatggctcatgagagtgtcccacattgccattactgtaaaaat
aggaaacgttctactgactacagcatatcctctgaatcctccaacaacag
ctggatcctgtcttatcttccatctttcctgaaagaacaacttggcaaat
ccagggcaatattgtccccgattcctcggaaaaggaattgcccgagtcca
ggaactgaagcacaccactgcttacctttcagctgacccacactgagagt
cagatcttttcaggattttgctgtctttcttccttacaagctcatggctc
ttttattagctttattttcatcctagatctgttagtcagagagagcagca
cgacaatgtctcagagttctactctgcagaacagtgtactctgctgtgag
agtcatgaaaactatcatctgatgaatgtacagagtctgacagagatccc
gactcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30235273_30236060
seq2: B6Ng01-050H06.b_44_831

seq1  GAATTCTTTGTTTAGCTCAGTAACCCATTTTTTAATGGGGTTATTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCAGTAACCCATTTTTTAATGGGGTTATTTGAAT  50

seq1  TTCCGGAGTTTAGTTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGAGTTTAGTTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC  100

seq1  CTATCAGATTTAGAATTGGTAAAATCCTTTCCCAATCTGTTGGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATTTAGAATTGGTAAAATCCTTTCCCAATCTGTTGGTGGCCTT  150

seq1  TTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTTGTTTCTTGATCTTACAGCAAAGGCCATTGCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTTGTTTCTTGATCTTACAGCAAAGGCCATTGCTGTTC  250

seq1  TGTTTAGGAATTTTTCCCGTGCCCATATCTTCGAGGGTTTCCCCCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGAATTTTTCCCGTGCCCATATCTTCGAGGGTTTCCCCCACTAT  300

seq1  CTCCTCTATAAATTTCAGTGCCTCTGGTTTTATGTGGAGGTCTTTGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTATAAATTTCAGTGCCTCTGGTTTTATGTGGAGGTCTTTGATCC  350

seq1  ACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCTGCTC  400

seq1  AGAATAATCTTAAAGACCCAGAAACAAACAAACAAACAAACAAACAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATCTTAAAGACCCAGAAACAAACAAACAAACAAACAAACAACCA  450

seq1  GAACAATAACTAAAGGAGTGCAAGGAGTGATCTACCTTTTCTTGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAACTAAAGGAGTGCAAGGAGTGATCTACCTTTTCTTGGAGGCA  500

seq1  ACCAGCAAGGGCCTAGACCATGCCTGAGAGCAAGGACTCCCTAATTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGGGCCTAGACCATGCCTGAGAGCAAGGACTCCCTAATTGTAA  550

seq1  CTGACCTAATCCTTTTCAGCCAAACATGCCTCCTCTGCAGGACTCTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTAATCCTTTTCAGCCAAACATGCCTCCTCTGCAGGACTCTGCAA  600

seq1  TCCCTCTGCAGCCTGCACCAAATGCTCAGCTGGACTGCTGAACTACTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCAGCCTGCACCAAATGCTCAGCTGGACTGCTGAACTACTTGT  650

seq1  TTTCTAGGGAAATGAGCTACACACTGTGGAGTGTTGCCTTACTAGTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGGAAATGAGCTACACACTGTGGAGTGTTGCCTTACTAGTGGGC  700

seq1  CCCCATCACATACCATATTAGAATGCCCATATGGCCTTTACCCAGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCACATACCATATTAGAATGCCCATATGGCCTTTACCCAGCAAAG  750

seq1  AAATCAGCCAATTCATCATTATCTCCTCCTCCTCCTCC  788
      ||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCCAATTCATCATTATCTCCTCCTCCTCCTCC  788

seq1: chr5_30356768_30357859
seq2: B6Ng01-050H06.g_67_1124 (reverse)

seq1  ACTGAGTGTGGGGGATCTCTTGTTCAGGAACTCCTTGTACATCCATCAGA  50
      |||||||    |||||||||   ||||  ||||  ||||||| |||||||
seq2  ACTGAGT---CGGGATCTCT--GTCAG--ACTC--TGTACATTCATCAGA  41

seq1  TGATTGAGTGTTTTCCATGACTTCTTCACAGGCAGAGGTACCACTTGTTT  100
      |||| |     ||| |||||||   ||||| ||||| ||| ||||   ||
seq2  TGATAG-----TTTTCATGACT--CTCACA-GCAGA-GTA-CACT--GTT  79

seq1  CTGCAGAGTAGAAACCTTCTGAGACATATGTCCGTGCTGCTCTCTCCTGA  150
      |||||||||||||    |||||||||| ||| ||||||||||||| ||||
seq2  CTGCAGAGTAGAA---CTCTGAGACAT-TGT-CGTGCTGCTCTCT-CTGA  123

seq1  CTAACAGATCTAGGGATTGTAAATTAGAGCTAATAAAAGAGCCATGAGCT  200
      |||||||||||| ||||   ||| || |||||||||||||||||||||||
seq2  CTAACAGATCTA-GGAT--GAAAATAAAGCTAATAAAAGAGCCATGAGCT  170

seq1  TGTAAGGGAGGAAGGACAGCAAAATTCTGGAAAAGATCTGACTTCTCAGT  250
      ||||| ||| ||| ||||||||||| || ||||||||||||| |||||||
seq2  TGTAA-GGAAGAAAGACAGCAAAATCCT-GAAAAGATCTGAC-TCTCAGT  217

seq1  GTGGGTCAGCTGAAAGGTAGGCAGTGGTGTGCTTCAGTTCCTGGACTCGG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGGGTCAGCTGAAAGGTAAGCAGTGGTGTGCTTCAGTTCCTGGACTCGG  267

seq1  GCAATTCCTTTTCCGGGGAATCGGGGACAATATTGCCCTGGATTTGCCAA  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAATTCCTTTTCCGAGGAATCGGGGACAATATTGCCCTGGATTTGCCAA  317

seq1  GTTGTTCTTTCAGGAAAGATTGGAAGATAAGACAGGATCCAGCTGTTGTT  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGTTCTTTCAGGAAAGA-TGGAAGATAAGACAGGATCCAGCTGTTGTT  366

seq1  GGAGGATTCAGAGGATATGCTGTAGTCAGTAGAACGTTTCCTATTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCAGAGGATATGCTGTAGTCAGTAGAACGTTTCCTATTTTTAC  416

seq1  AGTAATGGCAATGTGGGACACTCTCATGAGCCATAGTGTCAGAGATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGCAATGTGGGACACTCTCATGAGCCATAGTGTCAGAGATGGAA  466

seq1  GAAGACATACCATGGGATTCTGGTAAATCCGGTTCCAAAAGTGTTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATACCATGGGATTCTGGTAAATCCGGTTCCAAAAGTGTTGCTCT  516

seq1  AAAAACAAAGAGAGTTTTCTTTTCATTTTCTTTCGAATGAGTAGTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAGAGAGTTTTCTTTTCATTTTCTTTCGAATGAGTAGTGGGAA  566

seq1  AATTAGGACAAAGGAAGACAGTGGTAATTCCAAGTCCAAAATATTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGACAAAGGAAGACAGTGGTAATTCCAAGTCCAAAATATTTTTGG  616

seq1  CCAAAGGGATGTGAGGGTGGAAAAGGGATGCTATTCACAAGCATCAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGATGTGAGGGTGGAAAAGGGATGCTATTCACAAGCATCAGTTA  666

seq1  CTTCTGTAAAGAATCCCTCTACCAAAGCTCGAGTCTAAGTGGATCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAAAGAATCCCTCTACCAAAGCTCGAGTCTAAGTGGATCAAAGA  716

seq1  ACTCCACGTAAAACCAGAGACACTGAAATTTATAGAGGAGAAAGTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGTAAAACCAGAGACACTGAAATTTATAGAGGAGAAAGTGGGGA  766

seq1  AAACCCTCGAAGATATGGGAACAAGGGAAATGTTCCTAAACAGAACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCGAAGATATGGGAACAAGGGAAATGTTCCTAAACAGAACAGCA  816

seq1  ATGGCCTGTGCATTAAGATCAAGAATCGACAAATGGGACCTCATAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGTGCATTAAGATCAAGAATCGACAAATGGGACCTCATAAAATT  866

seq1  GCAAACTTTCTGTAGGGCAAAAGATACTGTCAATAAGACAAAAAGGCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTCTGTAGGGCAAAAGATACTGTCAATAAGACAAAAAGGCCAC  916

seq1  CAACAGATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAAATA  966

seq1  ATATCCAATATATACAAAGAGCTCAAGAAGCTGAACTCCAGAAATTCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATATATACAAAGAGCTCAAGAAGCTGAACTCCAGAAATTCAAA  1016

seq1  TAACCCCATTAAAAATGGGGTACAGGGCTAAACAAAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAATGGGGTACAGGGCTAAACAAAGAATTC  1058