BAC Information

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BAC

Clone NameB6Ng01-050H09
Chromosome5 (Build37)
Map Location 138,527,279 - 138,527,435
singlet/doubletsinglet
Overlap geneZkscan1
Upstream geneSerpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
Downstream geneZscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H09.bB6Ng01-050H09.g
ACCDH874398DH874399
length1571,222
definitionDH874398|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H09, 5' end.DH874399|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcataattccaacaagtatttattgactgctttcaatccgcct
agcactgccctgtacaataaatgctttctttggtcccaggccatggaaca
gccactctctataatcaatgtgtgtgtgtgctgtgtgtgtgtagggaggg
gaaggaa
gaattcaataggaattcagtgagaaggttacctattcagtaacattcaaa
tttacttctagtagagacagtgaaactaattaggcattacaaagaaccaa
gctggaatagctcagggctggtctgcagagtgtttacttgacacaatagc
cagtcttatccagacaagggaattcacaatgacctatctgaacaggtggg
ttcaccatgagagttaggaaatcctcctgagacaggtttcttcacttggc
ccaaagaaacagcataaatcaggcatttactaagaacccctggtggtggg
cttaacaatagactagctttacacctggcccccttcttagtggcagcggc
ctggtctgtgccttcttttgacctatacattccttttgtattgtgtcact
gtaactcggttggatgtatctcgcctggtttcttgttattcttctgtata
aaaagttaatgctcaacttgacaaattacattcagattctacacaatctc
ctgtgtgcatctgtctgtcattttcgctgactccttgcccatctgcaccc
agagacccatcctaggcagacatagggacccagagggtctgcggcactcc
acatcctcgccagcatctgcgatgaatttttgatcttagccattctgact
ggtgtgaggttgaatctcagggttgttttgatttgcattttcctgatgat
taaggatgttgaacattttttcagtgcttctcagccattcgatattcctc
agttgagaattctttgtttagctctctgtgccccatttttaatggggtta
cttggttttctggagcccatcttcttgagttctttatatatgttggatat
tagtccccaatctgatttaggatggtaaagatcctttcccatttgttggt
agccttttgtcttattgacagtgtctttggccttacagagctttgcattt
atgagtcccatttgtcaattctcgatttaagcacaggcaatgctgtctgt
caggaattttccctgtaccctattcttcaagcttttccccttctcctcta
tagtttcaggctctgtttatgtggagctattgattcactactgaaccttg
aaggaaagattggatcgttcgaatctctcacagtagcgcagtgtgccaca
cattgtaagctgctttatcctgtagttagctctctagcaaggtatcatgt
agagatttgctacggtgctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138527279_138527435
seq2: B6Ng01-050H09.b_42_198 (reverse)

seq1  TTCCTTCCCCTCCCTACACACACACAGCACACACACACATTGATTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCCTCCCTACACACACACAGCACACACACACATTGATTATAGA  50

seq1  GAGTGGCTGTTCCATGGCCTGGGACCAAAGAAAGCATTTATTGTACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTGTTCCATGGCCTGGGACCAAAGAAAGCATTTATTGTACAGGG  100

seq1  CAGTGCTAGGCGGATTGAAAGCAGTCAATAAATACTTGTTGGAATTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAGGCGGATTGAAAGCAGTCAATAAATACTTGTTGGAATTATGA  150

seq1  AGAATTC  157
      |||||||
seq2  AGAATTC  157