BAC Information

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BAC

Clone NameB6Ng01-050H16
Chromosome5 (Build37)
Map Location 55,024,563 - 55,174,683
singlet/doubletdoublet
Overlap geneEG666377, LOC666380
Upstream geneRbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H16.bB6Ng01-050H16.g
ACCDH874410DH874411
length1,1551,068
definitionDH874410|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H16, 5' end.DH874411|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,024,563 - 55,025,727)(55,173,609 - 55,174,683)
sequence
gaattcaagtgaagaaaagtttcttacggctcttccatgagcagatagat
aacaatgacaaaccagacaacattcacaaaggaagcttgctttctccccc
agaagcctcagtaagcattttctttcatctcattctctatagtactcgaa
gtgaacacttacaaaagatgtattatgaattgagctgggttggctaaact
aatccaaatatgaacttaggaaacaaattctcttttgataattgggaaat
tgtgaatttgtcagtagagagtagggagggacgctttcacaggggaaggg
aaaacaaaagcagaaaacgccaattagtatcctgatgtctccgtatgtgt
gtctgtacacacacagaatgatactttattattctgtcttagtgttagtc
ttctgtggctgctatgagatctgattttgtcaactttccccgtatatcaa
aggcaggctcatttgcctttgtcattagatatcatgaggctttttttcaa
acaatgttcttcctacttctggaaagtgtatatactcattatggcaatga
gagacataagagacaaagtcccctaaatctttaataatcgggaatcctct
gattggctgcattgtagtcttgagtcagtaatgtagtttttgcaagtagt
gcttctctctcaccctctttcactctctgtcttctctctctcactttcta
cgatcgcactcatctttgtatcacacgtttcctcactacattattattta
gcaattaaaaccagcaaaacagtaagtatctggttattgagaatgtgctc
catcacagggacagagggaaatagaatgcacttttttcagaaagcaaaaa
tagctctagatctgggctggagatggtggtcaaataacaatcaaacactg
tgtttctgcagtgttcaatgagatatggagcaagagagtgaaatatgaat
atacttttaagggatcttaatgatacatagaatgaaatatttgcaccatt
cttgttctgttctcctttgggtccttcagtccttctccaaccccttttgt
aagaatcccagcaaatcactgttgaagggtagtctctccattctttcctt
ggctgttggtgggagatctcaaaagacagtttgctaggttcttgtcctgc
aagca
gaattctctaaatttgtatgtgtttaagaaatgtaagtttagggttttat
gtttgaaaatataaaaataatatacaaggaaaagtcataattcattttat
cctcacaaacaccatatttagtgggtcattcctctacatgcacataaaga
tcatacatagttcatttttgctcaatacttagtagataattccttggata
tgtgccatgctttctagactccaactgtgtacattattcaactgaaatct
cagaactgtgtactcttactttcagggatcgaattcttatgctatatcct
actgcactgtattgataacaaatttacaagcttgcaccacttgttaacga
agtttcatttcaccaaactcaataattatccacagtgtctgcagcttaac
caaaaaatttgcagaagaaaatacagatttgattttcacaagtctaacta
acaaatcagtatcataaacaaaaggttaattaccctattaccaaggtttg
aatcatgcagtaatcctacaaggtaaagatttttattcccctttgtaaga
taggaagctgaggtttcagccagttacattatctagtcagaatctgaagc
aggggaggaatagttatagaaccgatgatgaaattcattgcttgaccctt
ggaactcgttttcctaaagtcgttgttaatttgatgtgtctaaggtatat
atacacttccctaacattattaacagcattttattatggctatacactca
aagggataccattttgcacacagagaatctacttattcaaatagagagtt
cattaatgtcataagctaacaatttacctttccctcatagttccaagact
atccatatgatagtctacttgcatttacacccgcatcctattcttagata
atatccatgcaaatcttctatttaattgatcgtatatccctgtatcacct
gtatcactgacaggggtagttgacccaaatatctctagggagaaagtatt
aagaaaatagagtatatcttagtcctgaagtatagttatatatttcataa
tttgttttatatttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55024563_55025727
seq2: B6Ng01-050H16.b_43_1197

seq1  GAATTCAAGTGAAGAAAAGTTTCTTACGGCTCTTCCATGAGCAGATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAAGAAAAGTTTCTTACGGCTCTTCCATGAGCAGATAGAT  50

seq1  AACAATGACAAACCAGACAACATTCACAAAGGAAGCTTGCTTTCTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGACAAACCAGACAACATTCACAAAGGAAGCTTGCTTTCTCCCCC  100

seq1  AGAAGCCTCAGTAAGCATTTTCTTTCATCTCATTCTCTATAGTACTCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTCAGTAAGCATTTTCTTTCATCTCATTCTCTATAGTACTCGAA  150

seq1  GTGAACACTTACAAAAGATGTATTATGAATTGAGCTGGGTTGGCTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACTTACAAAAGATGTATTATGAATTGAGCTGGGTTGGCTAAACT  200

seq1  AATCCAAATATGAACTTAGGAAACAAATTCTCTTTTGATAATTGGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAATATGAACTTAGGAAACAAATTCTCTTTTGATAATTGGGAAAT  250

seq1  TGTGAATTTGTCAGTAGAGAGTAGGGAGGGACGCTTTCACAGGGGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTGTCAGTAGAGAGTAGGGAGGGACGCTTTCACAGGGGAAGGG  300

seq1  AAAACAAAAGCAGAAAACGCCAATTAGTATCCTGATGTCTCCGTATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGCAGAAAACGCCAATTAGTATCCTGATGTCTCCGTATGTGT  350

seq1  GTCTGTACACACACAGAATGATACTTTATTATTCTGTCTTAGTGTTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTACACACACAGAATGATACTTTATTATTCTGTCTTAGTGTTAGTC  400

seq1  TTCTGTGGCTGCTATGAGATCTGATTTTGTCAACTTTCCCCGTATATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCTGCTATGAGATCTGATTTTGTCAACTTTCCCCGTATATCAA  450

seq1  AGGCAGGCTCATTTGCCTTTGTCATTAGATATCATGAGGCTTTTTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTCATTTGCCTTTGTCATTAGATATCATGAGGCTTTTTTTCAA  500

seq1  ACAATGTTCTTCCTACTTCTGGAAAGTGTATATACTCATTATGGCAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTTCCTACTTCTGGAAAGTGTATATACTCATTATGGCAATGA  550

seq1  GAGACATAAGAGACAAAGTCCCCTAAATCTTTAATAATCGGGAATCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAAGAGACAAAGTCCCCTAAATCTTTAATAATCGGGAATCCTCT  600

seq1  GATTGGCTGCATTGTAGTCTTGAGTCAGTAATGTAGTTTTTGCAAGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTGCATTGTAGTCTTGAGTCAGTAATGTAGTTTTTGCAAGTAGT  650

seq1  GCTTCTCTCTCACCCTCTTTCACTCTCTGTCTTCTCTCTCTCACTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTCTCACCCTCTTTCACTCTCTGTCTTCTCTCTCTCACTTTCTA  700

seq1  CGATCGCACTCATCTTTGTATCACACGTTTCCTCACTACATTATTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCGCACTCATCTTTGTATCACACGTTTCCTCACTACATTATTATTTA  750

seq1  GCAATTAAAACCAGCAAAACAGTAAGTATCTGGTTATTGAGAATGTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAAACCAGCAAAACAGTAAGTATCTGGTTATTGAGAATGTGCTC  800

seq1  CATCACAGGGACAGAGGGAAATAGAATGCACTTTTTTCAGAAAGCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGGGACAGAGGGAAATAGAATGCACTTTTTTCAGAAAGCAAAAA  850

seq1  TAGCTCTAGATCTGGGCTGGAGATGGTGGTCAAATAACAATCAAAACACT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGCTCTAGATCTGGGCTGGAGATGGTGGTCAAATAACAATC-AAACACT  899

seq1  GTGTTTCTGCAGTGTTCAATGAGATATGGAGCAAGAGAGTGAAATATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGCAGTGTTCAATGAGATATGGAGCAAGAGAGTGAAATATGAA  949

seq1  TATACTTTTAAGGGATCTTAATGATACATAGTATTGAAATATTTGCAACA  1000
      ||||||||||||||||||||||||||||||| | ||||||||||||| ||
seq2  TATACTTTTAAGGGATCTTAATGATACATAG-AATGAAATATTTGCACCA  998

seq1  TTCCTGTTCCTGTTCT-CTTTGGGTCCCTCAGTCCTTCTCCAACCTCTTT  1049
      ||| |||| ||||||| |||||||||| ||||||||||||||||| ||||
seq2  TTCTTGTT-CTGTTCTCCTTTGGGTCCTTCAGTCCTTCTCCAACCCCTTT  1047

seq1  TGTAAGACTCCACAAGCTATATCTACTGTTTGAGTGTTAGTCTCTCCATT  1099
      ||||||| ||  | ||| | ||| |||| ||||  | ||||||||||| |
seq2  TGTAAGAATC--CCAGC-AAATC-ACTG-TTGAAGGGTAGTCTCTCCA-T  1091

seq1  TCTTTCCATTGGCTGTTGGGTGGAGCATCTCAGAGGACAGTTTTGCTAGG  1149
      ||||||| |||||||||||  |||| |||||| | ||||| |||||||||
seq2  TCTTTCC-TTGGCTGTTGGTGGGAG-ATCTCAAAAGACAG-TTTGCTAGG  1138

seq1  TTCTTGT-CTGCAAGCA  1165
      ||||||| |||||||||
seq2  TTCTTGTCCTGCAAGCA  1155

seq1: chr5_55173609_55174683
seq2: B6Ng01-050H16.g_64_1131 (reverse)

seq1  ATATAAA-ATAAAAACAAATATGAAAATAATATA-AACTATACTTCAGGA  48
      ||||||| ||||||  || |||||    |||||| |||||||||||||||
seq2  ATATAAATATAAAACAAATTATGA----AATATATAACTATACTTCAGGA  46

seq1  CTAAGATATACTCTATTTTCTTAATTACTTTTCTCCCTAGAGATATTTGG  98
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  CTAAGATATACTCTATTTTCTTAA-TAC-TTTCTCCCTAGAGATATTTGG  94

seq1  GTCAACTACCCCTGTCAGTGATACAGGTGATACAGGGATATACGATCAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTACCCCTGTCAGTGATACAGGTGATACAGGGATATACGATCAAT  144

seq1  TAAAATAGAAGATTTTGCATGGATATTATTCTAAGAATAGGATGCGGGTG  198
      | |||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  T-AAATAGAAGA-TTTGCATGGATATTA-TCTAAGAATAGGATGCGGGTG  191

seq1  TAAATGCAAGTAGACTATCATATGGATAGTCTTGGAACTATGAGGGAAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAGTAGACTATCATATGGATAGTCTTGGAACTATGAGGGAAAG  241

seq1  GTAAATTGTTAGCTTATGACATTAATGAACTCTCTATTTGAATAAGTAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTTAGCTTATGACATTAATGAACTCTCTATTTGAATAAGTAGA  291

seq1  TTCTCTGTGTGCAAAATGGTATCCCTTTGAGTGTATAGCCATAATAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTGCAAAATGGTATCCCTTTGAGTGTATAGCCATAATAAAAT  341

seq1  GCTGTTAATAATGTTAGGGAAGTGTATATATACCTTAGACACATCAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAATAATGTTAGGGAAGTGTATATATACCTTAGACACATCAAATT  391

seq1  AACAACGACTTTAGGAAAACGAGTTCCAAGGGTCAAGCAATGAATTTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGACTTTAGGAAAACGAGTTCCAAGGGTCAAGCAATGAATTTCAT  441

seq1  CATCGGTTCTATAACTATTCCTCCCCTGCTTCAGATTCTGACTAGATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTTCTATAACTATTCCTCCCCTGCTTCAGATTCTGACTAGATAAT  491

seq1  GTAACTGGCTGAAACCTCAGCTTCCTATCTTACAAAGGGGAATAAAAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGCTGAAACCTCAGCTTCCTATCTTACAAAGGGGAATAAAAATC  541

seq1  TTTACCTTGTAGGATTACTGCATGATTCAAACCTTGGTAATAGGGTAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGTAGGATTACTGCATGATTCAAACCTTGGTAATAGGGTAATT  591

seq1  AACCTTTTGTTTATGATACTGATTTGTTAGTTAGACTTGTGAAAATCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTGTTTATGATACTGATTTGTTAGTTAGACTTGTGAAAATCAAA  641

seq1  TCTGTATTTTCTTCTGCAAATTTTTTGGTTAAGCTGCAGACACTGTGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTTCTTCTGCAAATTTTTTGGTTAAGCTGCAGACACTGTGGAT  691

seq1  AATTATTGAGTTTGGTGAAATGAAACTTCGTTAACAAGTGGTGCAAGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGAGTTTGGTGAAATGAAACTTCGTTAACAAGTGGTGCAAGCTT  741

seq1  GTAAATTTGTTATCAATACAGTGCAGTAGGATATAGCATAAGAATTCGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTGTTATCAATACAGTGCAGTAGGATATAGCATAAGAATTCGAT  791

seq1  CCCTGAAAGTAAGAGTACACAGTTCTGAGATTTCAGTTGAATAATGTACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAGTAAGAGTACACAGTTCTGAGATTTCAGTTGAATAATGTACA  841

seq1  CAGTTGGAGTCTAGAAAGCATGGCACATATCCAAGGAATTATCTACTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGTCTAGAAAGCATGGCACATATCCAAGGAATTATCTACTAAG  891

seq1  TATTGAGCAAAAATGAACTATGTATGATCTTTATGTGCATGTAGAGGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCAAAAATGAACTATGTATGATCTTTATGTGCATGTAGAGGAAT  941

seq1  GACCCACTAAATATGGTGTTTGTGAGGATAAAATGAATTATGACTTTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTAAATATGGTGTTTGTGAGGATAAAATGAATTATGACTTTTCC  991

seq1  TTGTATATTATTTTTATATTTTCAAACATAAAACCCTAAACTTACATTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTATTTTTATATTTTCAAACATAAAACCCTAAACTTACATTTC  1041

seq1  TTAAACACATACAAATTTAGAGAATTC  1075
      |||||||||||||||||||||||||||
seq2  TTAAACACATACAAATTTAGAGAATTC  1068