BAC Information

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BAC

Clone NameB6Ng01-050L08
Chromosome5 (Build37)
Map Location 123,698,574 - 123,878,979
singlet/doubletdoublet
Overlap genePsmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
Upstream geneTect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd
Downstream geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L08.bB6Ng01-050L08.g
ACCDH874573DH874574
length982818
definitionDH874573|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L08, 5' end.DH874574|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,878,000 - 123,878,979)(123,698,574 - 123,699,395)
sequence
gaattcctactacagtttcccaactgtctgatagtaatccgaatctttcc
cccagtaacaaactgtaatactcagtgtaacagttctcagtgcattttct
gggtccttccacagaaccaaacattaggatagttttgcaaaatccacaat
gcagattaggcattaaagttggccttatgaactgttccctctaattttgc
agtataattcatatttactgggtaacatataatcagataaagatatatga
ataaacacatttaaacatgatgctttattttgttgttattgagtgtatgt
ggtatggtagcttgggcttattttgttttgctttttttttttttaagatt
ttatttattatatttattagtacgctgtagctatttttagacataccaga
agagggcatcagatcccattacagatggttgtgagccaccatgtggttgc
tgggaattgaactcaggacctatggaagagcagtcagtgctcttaaccgc
tgagccatctctccagcccttgttttgctttttgaggcagtgtcccctgt
gtagccctggctggtgggggaacaccttatgcaacacaagctggcttcaa
acggggcaaccctggtgagggaccattatgctcagtcatatgtttgtttt
gtagcccaatttcacttatatgtcatatcttactatgtcaataaaacaat
cttttacagtcctatctacaagttgtcagtctatttaacaacttccctat
agacagaggttaatatgaaccacatttttgctactgccagcaatgttgtg
atgaatattccagtatttatacctgtgtaggacttagctcttaacattta
ataatttcttagaaatgtgccggaaatgcagttaaaaaaacaaaaaattc
aattttttatttttctgatttttctgtcatactgtaaacctcttcctact
ttagtaattctcttttttggggggggagggtg
gaattctctagattatgagccagtgagtggggatgactctggcgagtaat
gatttgatgtcattttccttttggagacggactcagtgtgtaatcctgac
tatcctggaattccctgtgtagaccaggctggccttgagctgacagagat
ccccctgcctctgcctcattagtattgggatgagaggcatatactgacat
ggctggctagactctgaggaatatgtattatacatatataatttatactt
atttttgagaatttcgtacatgcacatagtacatttctatatttcctgtc
atctcaagtccctctcagacctcccctcgtacccacttcccaggttcttg
ccctcttttgttttttttctttttaaataaataacctactaagtgccatt
tgtgctgtcagtatattcatggtgtgggatcttccactggaggaatgtgg
tcaaccttccagagaccacacccctaacctccacaggacttgagtacccc
tactttttcttggaagcagggtctcatgtagcccagtccagcctcagatt
tgccttgaagctgaagatgttctcttctgctgtctctccctccaatgtcc
aactgcagtatcacccaccgcctaggggtgggggcttgctggagaccgga
tctcacaagttcagactggcctggagctcaatgtacccgcactggcctta
cccttgggatcttgctgcctggtctctggtattaaagtgtatgccaccaa
acctttgtacagttagagaactgtcaaataaagccagtcttgtagctgtg
tgattgtgaccactgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123878000_123878979
seq2: B6Ng01-050L08.b_43_1024 (reverse)

seq1  CACCC-CCCCCCCCAAAAAAAGGAATTACTAAAAAGTAGGAAGAGTTTTA  49
      ||||| ||||||||||||||  ||||||||  ||||||||||||| ||||
seq2  CACCCTCCCCCCCCAAAAAAGAGAATTACT--AAAGTAGGAAGAGGTTTA  48

seq1  AAGTATGACAGAAAAATCAGAAAAATAAAAAAATTTGAATTTTTTGTTTT  99
       |||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CAGTATGACAGAAAAATCAGAAAAATAAAAAA--TTGAATTTTTTGTTTT  96

seq1  TTTAACTGCATCTCCGGCACATTTCT-AGGAATTATTAAATGTTAAGAGC  148
      ||||||||||| |||||||||||||| || ||||||||||||||||||||
seq2  TTTAACTGCATTTCCGGCACATTTCTAAGAAATTATTAAATGTTAAGAGC  146

seq1  TAAGTCCTACACAGGTATAAATACTGGAATATTCATCACAACATTGCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCTACACAGGTATAAATACTGGAATATTCATCACAACATTGCTGG  196

seq1  CAGTAGC-AAAATGT-GTTCATATAAGCCTCTGTCTATAGGGAAGTTGTT  246
      ||||||| ||||||| |||||||| | |||||||||||||||||||||||
seq2  CAGTAGCAAAAATGTGGTTCATATTAACCTCTGTCTATAGGGAAGTTGTT  246

seq1  AAATAGACTGACAAACTTGTAGATAGGACTGTAAAAGATTG-TTTATTGA  295
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AAATAGACTGAC-AACTTGTAGATAGGACTGTAAAAGATTGTTTTATTGA  295

seq1  CATAGTAAGATATGACATATAAGTGAAAATTGGGCTACAAAACAAACATA  345
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATAGTAAGATATGACATATAAGTG-AAATTGGGCTACAAAACAAACATA  344

seq1  TGACTGAGCATAATGGT-CCTCACCAGGGTTGCCCCGTTTGAAGCCAGCT  394
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGACTGAGCATAATGGTCCCTCACCAGGGTTGCCCCGTTTGAAGCCAGCT  394

seq1  TGTGTTGCATAAGGTGTT-CCCCACCAGCCAGGGCTACACA-GGGACACT  442
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TGTGTTGCATAAGGTGTTCCCCCACCAGCCAGGGCTACACAGGGGACACT  444

seq1  GCCTCAAAAAGCAAAACAAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAAAAGCAAAACAAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGC  494

seq1  ACTGACTGCTCTTCCATAGGTCCTGAGTTCAATTCCCAGCAACCACATGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGCTCTTCCATAGGTCCTGAGTTCAATTCCCAGCAACCACATGG  544

seq1  TGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTATGTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTATGTCT  594

seq1  AAAAATAGCTACAGCGTACTAATAAATATAATAAATAAAATCTTAAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGCTACAGCGTACTAATAAATATAATAAATAAAATCTTAAAAAA  644

seq1  AAAAAAAGCAAAACAAAATAAGCCCAAGCTACCATACCACATACACTCAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCAAAACAAAATAAGCCCAAGCTACCATACCACATACACTCAA  694

seq1  TAACAACAAAATAAAGCATCATGTTTAAATGTGTTTATTCATATATCTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAAAATAAAGCATCATGTTTAAATGTGTTTATTCATATATCTTT  744

seq1  ATCTGATTATATGTTACCCAGTAAATATGAATTATACTGCAAAATTAGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTATATGTTACCCAGTAAATATGAATTATACTGCAAAATTAGAG  794

seq1  GGAACAGTTCATAAGGCCAACTTTAATGCCTAATCTGCATTGTGGATTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTTCATAAGGCCAACTTTAATGCCTAATCTGCATTGTGGATTTT  844

seq1  GCAAAACTATCCTAATGTTTGGTTCTGTGGAAGGACCCAGAAAATGCACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTATCCTAATGTTTGGTTCTGTGGAAGGACCCAGAAAATGCACT  894

seq1  GAGAACTGTTACACTGAGTATTACAGTTTGTTACTGGGGGAAAGATTCGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGTTACACTGAGTATTACAGTTTGTTACTGGGGGAAAGATTCGG  944

seq1  ATTACTATCAGACAGTTGGGAAACTGTAGTAGGAATTC  980
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATCAGACAGTTGGGAAACTGTAGTAGGAATTC  982

seq1: chr5_123698574_123699395
seq2: B6Ng01-050L08.g_68_885

seq1  GAATTCTCTAGATTATGAGCCAGTGAGTGGGGATGACTCTGGCGAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGATTATGAGCCAGTGAGTGGGGATGACTCTGGCGAGTAAT  50

seq1  GATTTGATGTCATTTTCCTTTTGGAGACGGACTCAGTGTGTAATCCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATGTCATTTTCCTTTTGGAGACGGACTCAGTGTGTAATCCTGAC  100

seq1  TATCCTGGAATTCCCTGTGTAGACCAGGCTGGCCTTGAGCTGACAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAATTCCCTGTGTAGACCAGGCTGGCCTTGAGCTGACAGAGAT  150

seq1  CCCCCTGCCTCTGCCTCATTAGTATTGGGATGAGAGGCATATACTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCTCTGCCTCATTAGTATTGGGATGAGAGGCATATACTGACAT  200

seq1  GGCTGGCTAGACTCTGAGGAATATGTATTATACATATATAATTTATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTAGACTCTGAGGAATATGTATTATACATATATAATTTATACTT  250

seq1  ATTTTTGAGAATTTCGTACATGCACATAGTACATTTCTATATTTCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGAATTTCGTACATGCACATAGTACATTTCTATATTTCCTGTC  300

seq1  ATCTCAAGTCCCTCTCAGACCTCCCCTCGTACCCACTTCCCAGGTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGTCCCTCTCAGACCTCCCCTCGTACCCACTTCCCAGGTTCTTG  350

seq1  CCCTCTTTTGTTTTTTTTCTTTTTAAATAAATAACCTACTAAGTGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTGTTTTTTTTCTTTTTAAATAAATAACCTACTAAGTGCCATT  400

seq1  TGTGCTGTCAGTATATTCATGGTGTGGGATCTTCCACTGGAGGAATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTCAGTATATTCATGGTGTGGGATCTTCCACTGGAGGAATGTGG  450

seq1  TCAACCTTCCAGAGACCACACCCCTAACCTCCACAGGACTTGAGTACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTCCAGAGACCACACCCCTAACCTCCACAGGACTTGAGTACCCC  500

seq1  TACTTTTTCTTGGAAGCAGGGTCTCATGTAGCCCAGTCCAGCCTCAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCTTGGAAGCAGGGTCTCATGTAGCCCAGTCCAGCCTCAGATT  550

seq1  TGCCTTGAAGCTGAAGATGTTCTCTTCTGCTGTCTCTCCCTCCAATGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAGCTGAAGATGTTCTCTTCTGCTGTCTCTCCCTCCAATGTCC  600

seq1  AACTGCAGTATCACCCACCGCCTAGGGGTGGGGGCTTGCTGGAGACCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGTATCACCCACCGCCTAGGGGTGGGGGCTTGCTGGAGACCGGA  650

seq1  TCTCACAAGTTCAGACTGGCCTGGAGCTCAGTGTACCCGCACTGGCCTTA  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCACAAGTTCAGACTGGCCTGGAGCTCAATGTACCCGCACTGGCCTTA  700

seq1  CCCTTGGGATCTTGCTGCCCTGGTCTCCTGGTATTATAGTGTATGCCACC  750
      ||||||||||||||||| |||||||| ||||||||| |||||||||||||
seq2  CCCTTGGGATCTTGCTG-CCTGGTCT-CTGGTATTAAAGTGTATGCCACC  748

seq1  AAACCTTGTTACAGGTTAGAGAAACTGTCAGATAAAGCCAGTCTTGTAGC  800
      |||||||  |||| ||||||| |||||||| |||||||||||||||||||
seq2  AAACCTTTGTACA-GTTAGAG-AACTGTCAAATAAAGCCAGTCTTGTAGC  796

seq1  TGTGTGATTGTGACCACTGTCA  822
      ||||||||||||||||||||||
seq2  TGTGTGATTGTGACCACTGTCA  818