BAC Information

Click to search

BAC

Clone NameB6Ng01-050L20
Chromosome5 (Build37)
Map Location 116,212,685 - 116,395,409
singlet/doubletdoublet
Overlap geneLOC665032, Cit
Upstream geneGit2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Downstream genePrkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L20.bB6Ng01-050L20.g
ACCDH874594DH874595
length173607
definitionDH874594|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L20, 5' end.DH874595|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,395,237 - 116,395,409)(116,212,685 - 116,213,290)
sequence
gaattctgggtcctcccaagccatgcatctcagaaagagaggagctgaag
ggccagggtaagtctgggtgactgaggctgctgttctgacacagccaggg
ataagaaggcgttgccctgcccggcagtatgtgggtggggaagataatac
aaaaggcgggggtgggggtgggg
gaattcagggaagaaatgaagcctgtgtgggcaggctgctcggagaaaca
caccattatgccccatctcagtatgaggtgtgtttagagttcagcaagaa
tcccagataagacaccagactcctgcctcccccagctagccactgacgtc
ttcttgccttggtgctgttcaatttatcttagggttgaaaagttacactt
ggacgtgacactgaatccacatttcaggaaagagttgggaggacggtgaa
ggatagaaaaacttgggatggaggcaatgctatactctaggaagagtgta
ccgccctgaaagactcagccaatgaggaattcagggaaatgtgatcggga
atataaaatccactttcccccacccccagccgtttttaccttaccttctc
tctctgcagattgatgtctggtctttgataaacttcttttcttctctact
gggtctctgactatgaggtgaagatctccgcaactcacacgactactctt
ctactcctctttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttctcctccctc
ctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116395237_116395409
seq2: B6Ng01-050L20.b_37_209 (reverse)

seq1  CCCCACCCCCACCCCCGCCTTTTGTATTATCTTCCCCACCCACATACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCACCCCCGCCTTTTGTATTATCTTCCCCACCCACATACTGC  50

seq1  CGGGCAGGGCAACGCCTTCTTATCCCTGGCTGTGTCAGAACAGCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGGCAACGCCTTCTTATCCCTGGCTGTGTCAGAACAGCAGCCTC  100

seq1  AGTCACCCAGACTTACCCTGGCCCTTCAGCTCCTCTCTTTCTGAGATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCAGACTTACCCTGGCCCTTCAGCTCCTCTCTTTCTGAGATGCA  150

seq1  TGGCTTGGGAGGACCCAGAATTC  173
      |||||||||||||||||||||||
seq2  TGGCTTGGGAGGACCCAGAATTC  173

seq1: chr5_116212685_116213290
seq2: B6Ng01-050L20.g_68_674

seq1  GAATTCAGGGAAGAAATGAAGCCTGTGTGGGCAGGCTGCTCGGAGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAGAAATGAAGCCTGTGTGGGCAGGCTGCTCGGAGAAACA  50

seq1  CACCATTATGCCCCATCTCAGTATGAGGTGTGTTTAGAGTTCAGCAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTATGCCCCATCTCAGTATGAGGTGTGTTTAGAGTTCAGCAAGAA  100

seq1  TCCCAGATAAGACACCAGACTCCTGCCTCCCCCAGCTAGCCACTGACGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATAAGACACCAGACTCCTGCCTCCCCCAGCTAGCCACTGACGTC  150

seq1  TTCTTGCCTTGGTGCTGTTCAATTTATCTTAGGGTTGAAAAGTTACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTTGGTGCTGTTCAATTTATCTTAGGGTTGAAAAGTTACACTT  200

seq1  GGACGTGACACTGAATCCACATTTCAGGAAAGAGTTGGGAGGACGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGACACTGAATCCACATTTCAGGAAAGAGTTGGGAGGACGGTGAA  250

seq1  GGATAGAAAAACTTGGGATGGAGGCAATGCTATACTCTAGGAAGAGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAAAACTTGGGATGGAGGCAATGCTATACTCTAGGAAGAGTGTA  300

seq1  CCGCCCTGAAAGACTCAGCCAATGAGGAATTCAGGGAAATGTGATCGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCTGAAAGACTCAGCCAATGAGGAATTCAGGGAAATGTGATCGGGA  350

seq1  ATATAAAATCCACTTTCCCCCACCCCCAGCCGTTTTTACCTTACCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATCCACTTTCCCCCACCCCCAGCCGTTTTTACCTTACCTTCTC  400

seq1  TCTCTGCAGATTGATGTCTGGTCTTTGATAAACTTCTTTTCTTCTCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAGATTGATGTCTGGTCTTTGATAAACTTCTTTTCTTCTCTACT  450

seq1  GGGTCTCTGACTATGAGGTGAAGATCTCCGCAACTCACACGACTACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGACTATGAGGTGAAGATCTCCGCAACTCACACGACTACTCTT  500

seq1  CTACTCCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  550

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT-CCTC  599
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCCTC  600

seq1  CTCCTCC  606
      |||||||
seq2  CTCCTCC  607