BAC Information

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BAC

Clone NameB6Ng01-050O23
Chromosome5 (Build37)
Map Location 125,530,838 - 125,653,684
singlet/doubletdoublet
Overlap geneNcor2
Upstream geneAbcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik
Downstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050O23.bB6Ng01-050O23.g
ACCDH874732DH874733
length1,071110
definitionDH874732|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O23, 5' end.DH874733|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,530,838 - 125,531,916)(125,653,575 - 125,653,684)
sequence
gaattctcgggtggtgagaggcctcggctggccccgtctctgctcctaag
cagatgtgtaaccatccccctccccaggatttggggctcacagtcactcc
cctcttctgtgggcagctctgtctccaccacttcccctccatgctgtcta
tgtccatgctcatgagggtggctgggagcctcaaccaagagcctagggcc
cagccgaggatgctgagacgacttatgccaggcctatggagaaagcaggt
gaacgaactatggggatctggggccagaagcctggggtctagtcagggct
cctctgtgctcagccctaggcctggcccaggaaagcagggatgcctagaa
gatggagacataggacagtgtgcgtgtgcctgtgcgtgcgcgttcactcc
ccctcccctccgtccccacctcccaggacaacagtgacctcaccttctgc
ctcctccgccagctcttcctcattggcacttgcgcctgatgcttccatct
cttcgtcctcagcggcaggtgggaaggctgtctcctcgctcgccgcagct
ggggtcttcttcttcttcctccgagcgttcctctccttctcctgggacag
gacagtagcggtcacggctggggacgccctatgtctgaggcctggtcccg
gctgcgagagcagtgagtttggctgcacggctgtgtgggtaggtagcctt
cccactcagcccgtggcagtggccatgcaggccagagctatttttaccat
agacgcttcatagcacggtgtgtcccagtgggaccctgggtgcaggctgg
gccaggccacagtgtcacagtgcacactttaggcacaagtggaggggctg
tggatacagactcagggatatataacatgggccactaccctcaaagccag
cacacacaccctaaagtttggactcaggggactggccagggaccacagtg
ggatcaaatggggaaaaaaaaaggcacaggccaagtcagctgggtgggtg
atcagatctatagaatcgacactggagtcctggtttaagtgcgagggtaa
atggtcttacatggggtaagc
tgagtcctttctgcctcagcctccagagtagctgagaaaaaatctgctga
atgtaatcatttaattaccaatgaagtgagaagcccgggggcggggatgg
ggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125530838_125531916
seq2: B6Ng01-050O23.b_45_1115

seq1  GAATTCTCGGGTGGTGAGAGGCCTCGGCTGGCCCCGTCTCTGCTCCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGGTGGTGAGAGGCCTCGGCTGGCCCCGTCTCTGCTCCTAAG  50

seq1  CAGATGTGTAACCATCCCCCTCCCCAGGATTTGGGGCTCACAGTCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGTAACCATCCCCCTCCCCAGGATTTGGGGCTCACAGTCACTCC  100

seq1  CCTCTTCTGTGGGCAGCTCTGTCTCCACCACTTCCCCTCCATGCTGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGTGGGCAGCTCTGTCTCCACCACTTCCCCTCCATGCTGTCTA  150

seq1  TGTCCATGCTCATGAGGGTGGCTGGGAGCCTCAACCAAGAGCCTAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGCTCATGAGGGTGGCTGGGAGCCTCAACCAAGAGCCTAGGGCC  200

seq1  CAGCCGAGGATGCTGAGACGACTTATGCCAGGCCTATGGAGAAAGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGAGGATGCTGAGACGACTTATGCCAGGCCTATGGAGAAAGCAGGT  250

seq1  GAACGAACTATGGGGATCTGGGGCCAGAAGCCTGGGGTCTAGTCAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAACTATGGGGATCTGGGGCCAGAAGCCTGGGGTCTAGTCAGGGCT  300

seq1  CCTCTGTGCTCAGCCCTAGGCCTGGCCCAGGAAAGCAGGGATGCCTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGCTCAGCCCTAGGCCTGGCCCAGGAAAGCAGGGATGCCTAGAA  350

seq1  GATGGAGACATAGGACAGTGTGCGTGTGCCTGTGCGTGCGCGTTCACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGACATAGGACAGTGTGCGTGTGCCTGTGCGTGCGCGTTCACTCC  400

seq1  CCCTCCCCTCCGTCCCCACCTCCCAGGACAACAGTGACCTCACCTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCCGTCCCCACCTCCCAGGACAACAGTGACCTCACCTTCTGC  450

seq1  CTCCTCCGCCAGCTCTTCCTCATTGGCACTTGCGCCTGATGCTTCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCGCCAGCTCTTCCTCATTGGCACTTGCGCCTGATGCTTCCATCT  500

seq1  CTTCGTCCTCAGCGGCAGGTGGGAAGGCTGTCTCCTCGCTCGCCGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCCTCAGCGGCAGGTGGGAAGGCTGTCTCCTCGCTCGCCGCAGCT  550

seq1  GGGGTCTTCTTCTTCTTCCTCCGAGCGTTCCTCTCCTTCTCCTGGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTCTTCTTCTTCCTCCGAGCGTTCCTCTCCTTCTCCTGGGACAG  600

seq1  GACAGTAGCGGTCACGGCTGGGGACGCCCTATGTCTGAGGCCTGGTCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCGGTCACGGCTGGGGACGCCCTATGTCTGAGGCCTGGTCCCG  650

seq1  GCTGCGAGAGCAGTGAGTTTGGCTGCACGGCTGTGTGGGTAGGTAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAGAGCAGTGAGTTTGGCTGCACGGCTGTGTGGGTAGGTAGCCTT  700

seq1  CCCACTCAGCCCGTGGCAGTGGCCATGCAGGCCAGAGCTATTTTTACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAGCCCGTGGCAGTGGCCATGCAGGCCAGAGCTATTTTTACCAT  750

seq1  AGACGCTTCATAGCACGGTGTGTCCCAGTGGGACCCTGGGTGCAGGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCTTCATAGCACGGTGTGTCCCAGTGGGACCCTGGGTGCAGGCTGG  800

seq1  GCCAGGCCACAGTGTCACAGTGCACACTTTAGGCACAAGTGGAGGGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCACAGTGTCACAGTGCACACTTTAGGCACAAGTGGAGGGGCTG  850

seq1  TGGATACAGACTCAGGGATATATAACAT-GGCCACTACCCTCCAAAGCCA  899
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TGGATACAGACTCAGGGATATATAACATGGGCCACTACCCT-CAAAGCCA  899

seq1  GCAACACACACCCTAAAGTTTGGACTCAGGGGACTGGCCAGGGACCACAG  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-ACACACACCCTAAAGTTTGGACTCAGGGGACTGGCCAGGGACCACAG  948

seq1  TGGGATCAAATGGGGAAAAAAAAAAGGGCACAGGCCAAGTCAGCTGGGTG  999
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TGGGATCAAATGGGGAAAAAAAAA--GGCACAGGCCAAGTCAGCTGGGTG  996

seq1  GGTGATCAGGATTCTATAGGAATCGACACTGGAGTCCTTGTCTAAGTGCA  1049
      |||||||||   |||||| ||||||||||||||||||| || ||||||| 
seq2  GGTGATCAG--ATCTATA-GAATCGACACTGGAGTCCTGGTTTAAGTGC-  1042

seq1  GAGGGAAAAATGATCTAGCATGGGGTAAGC  1079
      |||||  ||||| |||  ||||||||||||
seq2  GAGGG-TAAATGGTCTTACATGGGGTAAGC  1071

seq1: chr5_125653575_125653684
seq2: B6Ng01-050O23.g_70_179 (reverse)

seq1  CCACCCCACCCCATCCCCGCCCCCGGGCTTCTCACTTCATTGGTAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCATCCCCGCCCCCGGGCTTCTCACTTCATTGGTAATTAA  50

seq1  ATGATTACATTCAGCAGATTTTTTCTCAGCTACTCTGGAGGCTGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACATTCAGCAGATTTTTTCTCAGCTACTCTGGAGGCTGAGGCAG  100

seq1  AAAGGACTCA  110
      ||||||||||
seq2  AAAGGACTCA  110