BAC Information

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BAC

Clone NameB6Ng01-051B03
Chromosome5 (Build37)
Map Location 22,276,940 - 22,410,693
singlet/doubletdoublet
Overlap geneLhfpl3
Upstream geneDnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051B03.bB6Ng01-051B03.g
ACCDH874824DH874825
length3131,149
definitionDH874824|Mus musculus domesticus DNA, BAC clone: B6Ng01-051B03, 5' end.DH874825|Mus musculus domesticus DNA, BAC clone: B6Ng01-051B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,276,940 - 22,277,450)(22,409,550 - 22,410,693)
sequence
aagcatttggtctgctttatattattattttttaaaaaataggaatcaca
ggctagcctacaaagtgcctttgatttctgctgatcacctgggaggcaca
caggccataggtattgggggtggtggtggtagtctggatgctgatctctg
attattattgttacacatctattttattttgctaaatgatgttacatgct
ttcttttctttttgctatctatttattttggaaacatgtcatgcagcact
gggttttgaagatccactcgaggggctgcatgtatttctagtgtatttgc
cgctgtttgctgc
gaattcccttacctgtctgctttctttcctccataatcaaagtctgatta
tgttttttttttttatgcaatgctgaggattagtagggaaacatagtcat
tctgtcttcccagaagtagaaatgggcaacatgttgtgaatttatactgt
tttcctcctggaaaaaaagggtgttatcttatttattactatgcttttaa
ctggaatgaaattacaccacttccctcttcctggtagcccctcccagctg
ttgtccttcacacccctgacccctccctctcaagttaatattctcttttt
gtttaattattattttttccttagcacactgctttaatgatcatctacat
tttggagtcttccaatggaatactttgccaattaattagctgcagttttg
gcaattaattagctgtttctatgacttctctgcaatttcaagttttctct
aaatgtctttcattcctcagtctgctgctgatacctctctcacagatcac
aagttatcctcaaggctgtttcttttagctaaatcaaaacaactactgca
gttgaaattatttggttgctcctgttaacattttatttcccttgattttc
atgaccacatgtttccaatgacagctctttcaccctgggcaaaatccaga
aactttgtgaacctcatctttttcactatacaactggggttgtaattttt
gatcggtgctttttaaggttgagctgaggcccaactaagatcatatgtat
ctaatgaacaccagtcagagtctggctttgagtgtacagcagtgagtgaa
acataaattctgggatttggccacagtctactggcagagacttagaaatt
gacagctataagaagaagtaggaacacatatacacatctatgtcatgaca
gcacttgggactcgagagctggggcaaggcttttcagggcatctcagcca
cttcttaaagactgagcagttcagtgatggaacaatgaatgggatggtgc
tgccctcgctggagcactagaggaaagaaaaccttcctcgtgaagccagt
ggttggtggtacttcagtgaactgaatagctttccttccaaagagatttg
tatcgtggagttgaccaagtccattttatcttgccctaggggggaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_22276940_22277450
seq2: B6Ng01-051B03.b_47_359

seq1  AAGCATTTGGTCTGCTTTATATTATTATTTTTTAAAAAATAGGAATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGGTCTGCTTTATATTATTATTTTTTAAAAAATAGGAATCACA  50

seq1  GGCTAGCCTACAAAGTGCCTTTGATTTCTGCTGATCACCTGGGAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTACAAAGTGCCTTTGATTTCTGCTGATCACCTGGGAGGCACA  100

seq1  CAGGCCATAGGTATTGGGGGTGGTGGTGGTAGTCTGGATGCTGATCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATAGGTATTGGGGGTGGTGGTGGTAGTCTGGATGCTGATCTCTG  150

seq1  ATTATTATTGTTACACATCTATTTTATTTTGCTAAATGATGTTACATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTGTTACACATCTATTTTATTTTGCTAAATGATGTTACATGCT  200

seq1  TTCTTTTCTTTTTGCTATCTATTTATTTTGGAAACATGTCATGCAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTGCTATCTATTTATTTTGGAAACATGTCATGCAGCACT  250

seq1  GGGTTTTGAAGATCCACTCGTGTGGCTGCATGTATTTCTAGTGTATTTGC  300
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  GGGTTTTGAAGATCCACTCGAGGGGCTGCATGTATTTCTAGTGTATTTGC  300

seq1  CGCTGTTGGCTGCATGGTACTCCAGGACGAATCTTCTCTCCACACCTGTT  350
      ||||||| |||||                                     
seq2  CGCTGTTTGCTGC-------------------------------------  313

seq1  CATTGCCTTGTGTTTGCCTCTAGATCTCTGCCATACTCAACAACCCTAGG  400
                                                        
seq2  --------------------------------------------------  313

seq1  ATGAACAGCTTGTGCACACTTCTCGATGAATGTGTATGGAACTGTTTGGA  450
                                                        
seq2  --------------------------------------------------  313

seq1  ACTGCTGGCTCACAGGGTGCTAATAGGCAGACATGGACTGTTACAGATCA  500
                                                        
seq2  --------------------------------------------------  313

seq1  TTTACTGCTGC  511
                 
seq2  -----------  313

seq1: chr5_22409550_22410693
seq2: B6Ng01-051B03.g_67_1215 (reverse)

seq1  CTCTT--CCTTTAGAGGCAAGATAAAATGGACTTGGTC-ACT-CACGATA  46
      |||||  ||  ||| ||||||||||||||||||||||| ||| |||||||
seq2  CTCTTCCCCCCTAG-GGCAAGATAAAATGGACTTGGTCAACTCCACGATA  49

seq1  CAAATCTCTTTGGAAAGGAATGC-AATCAGTTCACTG-AGTAACACCAA-  93
      ||||||||||||| |||||| || | ||||||||||| |||| |||||| 
seq2  CAAATCTCTTTGG-AAGGAAAGCTATTCAGTTCACTGAAGTACCACCAAC  98

seq1  CACTGGCTTCACGAGGAAGGTTTTCTTTCCTCTAGTGCTCCAGCGAGGGC  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTTCACGAGGAAGGTTTTCTTTCCTCTAGTGCTCCAGCGAGGGC  148

seq1  AGCA-CATCCCATTCATTGTTCCATCACTGAACTGCTCAGTCTGTAGGAA  192
      |||| |||||||||||||||||||||||||||||||||||||| || |||
seq2  AGCACCATCCCATTCATTGTTCCATCACTGAACTGCTCAGTCTTTAAGAA  198

seq1  GTGGCTGAGATGCCCTGGAAAGCCTTGCCCCAGCTCTCGGGTCCCTGAGT  242
      ||||||||||||||||| ||||||||||||||||||||| |||||  |||
seq2  GTGGCTGAGATGCCCTGAAAAGCCTTGCCCCAGCTCTCGAGTCCC-AAGT  247

seq1  GCTGTCATGACATAGATGTGTATATGTGTTCCTACTTCTTCTTATAGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGACATAGATGTGTATATGTGTTCCTACTTCTTCTTATAGCTG  297

seq1  TCAATTTCTAAGTCTCTGCCAGTAGACTGTGGCCAAATCCCAGAATTTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTAAGTCTCTGCCAGTAGACTGTGGCCAAATCCCAGAATTTAT  347

seq1  GTTTCACTCACTGCTGTACACTCAAAGCCAGACTCTGACTGGTGTTCATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTCACTGCTGTACACTCAAAGCCAGACTCTGACTGGTGTTCATT  397

seq1  AGATACATATGATCTTAGTTGGGCCTCAGCTCAACCTTAAAAAGCACCGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATATGATCTTAGTTGGGCCTCAGCTCAACCTTAAAAAGCACCGA  447

seq1  TCAAAAATTACAACCCCAGTTGTATAGTGAAAAAGATGAGGTTCACAAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTACAACCCCAGTTGTATAGTGAAAAAGATGAGGTTCACAAAG  497

seq1  TTTCTGGATTTTGCCCAGGGTGAAAGAGCTGTCATTGGAAACATGTGGTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATTTTGCCCAGGGTGAAAGAGCTGTCATTGGAAACATGTGGTC  547

seq1  ATGAAAATCAAGGGAAATAAAATGTTAACAGGAGCAACCAAATAATTTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATCAAGGGAAATAAAATGTTAACAGGAGCAACCAAATAATTTCA  597

seq1  ACTGCAGTAGTTGTTTTGATTTAGCTAAAAGAAACAGCCTTGAGGATAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTAGTTGTTTTGATTTAGCTAAAAGAAACAGCCTTGAGGATAAC  647

seq1  TTGTGATCTGTGAGAGAGGTATCAGCAGCAGACTGAGGAATGAAAGACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCTGTGAGAGAGGTATCAGCAGCAGACTGAGGAATGAAAGACAT  697

seq1  TTAGAGAAAACTTGAAATTGCAGAGAAGTCATAGAAACAGCTAATTAATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAACTTGAAATTGCAGAGAAGTCATAGAAACAGCTAATTAATT  747

seq1  GCCAAAACTGCAGCTAATTAATTGGCAAAGTATTCCATTGGAAGACTCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACTGCAGCTAATTAATTGGCAAAGTATTCCATTGGAAGACTCCA  797

seq1  AAATGTAGATGATCATTAAAGCAGTGTGCTAAGGAAAAAATAATAATTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGATGATCATTAAAGCAGTGTGCTAAGGAAAAAATAATAATTAA  847

seq1  ACAAAAAGAGAATATTAACTTGAGAGGGAGGGGTCAGGGGTGTGAAGGAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAGAATATTAACTTGAGAGGGAGGGGTCAGGGGTGTGAAGGAC  897

seq1  AACAGCTGGGAGGGGCTACCAGGAAGAGGGAAGTGGTGTAATTTCATTCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGGGAGGGGCTACCAGGAAGAGGGAAGTGGTGTAATTTCATTCC  947

seq1  AGTTAAAAGCATAGTAATAAATAAGATAACACCCTTTTTTTCCAGGAGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGCATAGTAATAAATAAGATAACACCCTTTTTTTCCAGGAGGA  997

seq1  AAACAGTATAAATTCACAACATGTTGCCCATTTCTACTTCTGGGAAGACA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATAAATTCACAACATGTTGCCCATTTCTACTTCTGGGAAGACA  1047

seq1  GAATGACTATGTTTCCCTACTAATCCTCAGCATTGCATAAAAAAAAAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTATGTTTCCCTACTAATCCTCAGCATTGCATAAAAAAAAAAAA  1097

seq1  CATAATCAGACTTTGATTATGGAGGAAAGAAAGCAGACAGGTAAGGGAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAGACTTTGATTATGGAGGAAAGAAAGCAGACAGGTAAGGGAAT  1147

seq1  TC  1144
      ||
seq2  TC  1149