BAC Information

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BAC

Clone NameB6Ng01-051F01
Chromosome5 (Build37)
Map Location 85,437,650 - 85,633,405
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051F01.bB6Ng01-051F01.g
ACCDH874994DH874995
length1,177952
definitionDH874994|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F01, 5' end.DH874995|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,437,650 - 85,438,833)(85,632,891 - 85,633,405)
sequence
gaattccaaaagaacataaacataaaaaagcaatttgttccccctcctgc
cagaatatggagtcatagctccttaattttcacaattgtgccaataaacc
ctctggattttgggctttgatacatacttcagtagattcctggattctag
ccttcaacttttattcatcctgtcatgcaaattctaagcctcccaagcag
catgaagcaatcactttaataaatattttttaaattatatatataaaact
acatatatataactatatataactataactatatatatatatatatatat
atatatagttggctctgcctctctcagaaatcttgagaagcgtcccaggg
atgtaaggaacagagaagcatctatgtgctgtaaaagaatgttacaggct
atatactttatgtgtttaaatattgttacagatgatcaaatggtaacgca
gtcaaggtccttgtcataagcctctagatcagcaccttattctacaggcc
tttcagctccttgtttgttttctgtgaacctcagctgctggggcagggtg
tgtttgattcagtggtgaagggcaccatactttccttcaaattatttccc
tctcaggagtttgatacttaaaaaataataggccagtaaatgttattttc
cacccttatagactccagatcactctctggggtttcaggtaatgtctatc
ttctaattaacctctttccttactgattaacagatgcttcctgtaaactc
cagcattgtaggccaaaataggagatttatgtagacaaattcactggttt
agccaatttgcatattgtccaagagtaaagtcactgagtttgggttagtt
gcatggcttagtacacagaggcatttgctcagcctcaaaacttagtgtaa
ttcctagatgctgcaaaatgactgaaaaagaattgatgggtgagatttct
cctctacctccatatctgtctcctttgaggtatgcagatggacagacaca
ttttgcatgcatgctttcacacacacagcacacacactagcgcacacacc
tctcacgcacacacaaatctatcgttctaaagaatatgtgaaataattaa
agtaaattctgttgtttctgagaaatccaaatttcagtagactggaggga
cttccaggattgcttctaatcgattta
gaattcaaaggaaaatagtattttcttcttgactagagatagaggcagat
ggtatcaagtacacttagaacctccagcaacggttttctatagcattagc
agtaaatctaccatttgcaatctattgtctatttaaatctatttaattta
catttaacaagacacctcttattcttatgagttaattaaagagttagtga
ctattaaaaggatactaattgaaatgcaataaataagataaccgagttag
tgtgtaattagccgaatttacataagtaataaacaccctattgcagtctt
ctagaatggagttgaactaatgctgagagggcaatctcatgcaggaacaa
gtatttagacatttaattaacataaaacaaaaagctctgacaaattaatt
gtatataatttttaaagtaactgccaaacatattatatatgaagtgtttt
aaacattataatattccttattaagcttttgattcattaatttaggaaga
aattaactcaaacaggataaaaagaattgcttgtccattgaggctggaca
aggcagccaagctggaagagcatattccacatacaggcagcaagttttgg
gatagcccccactcaaattgttcaggacccacatgaaaaccaagctacac
atctgctacatatgtgtgggaaggcctaggtccacctcatgcctgttgtt
tggtttgtatttcagtctctgagagacccaagagtccatgttagttgatt
ctgatggtcttcctgtggagtccttatcccctttaggcctacattccttc
ctccaattcttccttaagaatccccaagatccatccactatttggctgtg
ggtgtctgcgtctgtctgagtcggttggtaggtggaacctctcagagggc
agacatgctagactcctgtatgcaggcataacagagtatcattaatagtg
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85437650_85438833
seq2: B6Ng01-051F01.b_41_1217

seq1  GAATTCCAAAAGAACATAAACATAAAAAAGCAATTTGTTCCCCCTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGAACATAAACATAAAAAAGCAATTTGTTCCCCCTCCTGC  50

seq1  CAGAATATGGAGTCATAGCTCCTTAATTTTCACAATTGTGCCAATAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGGAGTCATAGCTCCTTAATTTTCACAATTGTGCCAATAAACC  100

seq1  CTCTGGATTTTGGGCTTTGATACATACTTCAGTAGATTCCTGGATTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATTTTGGGCTTTGATACATACTTCAGTAGATTCCTGGATTCTAG  150

seq1  CCTTCAACTTTTATTCATCCTGTCATGCAAATTCTAAGCCTCCCAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACTTTTATTCATCCTGTCATGCAAATTCTAAGCCTCCCAAGCAG  200

seq1  CATGAAGCAATCACTTTAATAAATATTTTTTAAATTATATATATAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCAATCACTTTAATAAATATTTTTTAAATTATATATATAAAACT  250

seq1  ACATATATATAACTATATATAACTATAACTATATATATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATAACTATATATAACTATAACTATATATATATATATATATAT  300

seq1  ATATATAGTTGGCTCTGCCTCTCTCAGAAATCTTGAGAAGCGTCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTTGGCTCTGCCTCTCTCAGAAATCTTGAGAAGCGTCCCAGGG  350

seq1  ATGTAAGGAACAGAGAAGCATCTATGTGCTGTAAAAGAATGTTACAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGAACAGAGAAGCATCTATGTGCTGTAAAAGAATGTTACAGGCT  400

seq1  ATATACTTTATGTGTTTAAATATTGTTACAGATGATCAAATGGTAACGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTATGTGTTTAAATATTGTTACAGATGATCAAATGGTAACGCA  450

seq1  GTCAAGGTCCTTGTCATAAGCCTCTAGATCAGCACCTTATTCTACAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTCCTTGTCATAAGCCTCTAGATCAGCACCTTATTCTACAGGCC  500

seq1  TTTCAGCTCCTTGTTTGTTTTCTGTGAACCTCAGCTGCTGGGGCAGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCCTTGTTTGTTTTCTGTGAACCTCAGCTGCTGGGGCAGGGTG  550

seq1  TGTTTGATTCAGTGGTGAAGGGCACCATACTTTCCTTCAAATTATTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTCAGTGGTGAAGGGCACCATACTTTCCTTCAAATTATTTCCC  600

seq1  TCTCAGGAGTTTGATACTTAAAAAATAATAGGCCAGTAAATGTTATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGAGTTTGATACTTAAAAAATAATAGGCCAGTAAATGTTATTTTC  650

seq1  CACCCTTATAGACTCCAGATCACTCTCTGGGGTTTCAGGTAATGTCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTATAGACTCCAGATCACTCTCTGGGGTTTCAGGTAATGTCTATC  700

seq1  TTCTAATTAACCTCTTTCCTTACTGATTAACAGATGCTTCCTGTAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTAACCTCTTTCCTTACTGATTAACAGATGCTTCCTGTAAACTC  750

seq1  CAGCATTGTAGGCCAAAATAGGAGATTTATGTAGACAAATTCACTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGTAGGCCAAAATAGGAGATTTATGTAGACAAATTCACTGGTTT  800

seq1  AGCCAATTTGCATATTGTCCAAGAGTAAAGTCACTGAGTTTGGGTTAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTTGCATATTGTCCAAGAGTAAAGTCACTGAGTTTGGGTTAGTT  850

seq1  GCATGGCTTAGTACACAGAGGCATTTGCTCAGGCCTCAAAACTTAGTGTA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCATGGCTTAGTACACAGAGGCATTTGCTCA-GCCTCAAAACTTAGTGTA  899

seq1  ATTCCTAGATGCTGCAAAATGACTGAAAAAGAATTGATGGTTGAGATTTC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTCCTAGATGCTGCAAAATGACTGAAAAAGAATTGATGGGTGAGATTTC  949

seq1  TCCTCTACCTCCATATCTGTCT-CTTTGAGGTATGCAGAT-GACAGAACA  998
      |||||||||||||||||||||| ||||||||||||||||| ||||| |||
seq2  TCCTCTACCTCCATATCTGTCTCCTTTGAGGTATGCAGATGGACAG-ACA  998

seq1  CA-TATGCATGCATGCATACACACACACACACACACACACACACACACAC  1047
      || | ||||||||||| | ||||||||||  |||||||||   | |||||
seq2  CATTTTGCATGCATGCTTTCACACACACA-GCACACACACTAGCGCACAC  1047

seq1  ACACACACACACACACACAAATC-ATCAGTTC-ACAGAGATATGTG-AAT  1094
      || | | ||| |||||||||||| ||| |||| | ||| ||||||| |||
seq2  AC-CTCTCACGCACACACAAATCTATC-GTTCTAAAGA-ATATGTGAAAT  1094

seq1  ATATTAAGTGAATATCTGTATGTCTCTGAGAAAATCTCAGATTTCAGTAG  1144
      |  | |||| ||| ||||| ||| |||||| ||||| || ||||||||||
seq2  AATTAAAGTAAAT-TCTGT-TGTTTCTGAG-AAATC-CAAATTTCAGTAG  1140

seq1  ACTGTAGTGAACTTCCATGCATTGCTTCTAGATCGATTTA  1184
      |||| || | ||||||| | |||||||||| |||||||||
seq2  ACTGGAG-GGACTTCCA-GGATTGCTTCTA-ATCGATTTA  1177

seq1: chr5_85632891_85633405
seq2: B6Ng01-051F01.g_63_577 (reverse)

seq1  CTGTTTGAGTTAATTTCTTCCTAAATTAATGAATCAAAAGCTTAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAGTTAATTTCTTCCTAAATTAATGAATCAAAAGCTTAATAAGG  50

seq1  AATATTATAATGTTTAAAACACTTCATATATAATATGTTTGGCAGTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAATGTTTAAAACACTTCATATATAATATGTTTGGCAGTTACT  100

seq1  TTAAAAATTATATACAATTAATTTGTCAGAGCTTTTTGTTTTATGTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTATATACAATTAATTTGTCAGAGCTTTTTGTTTTATGTTAAT  150

seq1  TAAATGTCTAAATACTTGTTCCTGCATGAGATTGCCCTCTCAGCATTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCTAAATACTTGTTCCTGCATGAGATTGCCCTCTCAGCATTAGT  200

seq1  TCAACTCCATTCTAGAAGACTGCAATAGGGTGTTTATTACTTATGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCATTCTAGAAGACTGCAATAGGGTGTTTATTACTTATGTAAAT  250

seq1  TCGGCTAATTACACACTAACTCGGTTATCTTATTTATTGCATTTCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTAATTACACACTAACTCGGTTATCTTATTTATTGCATTTCAATTA  300

seq1  GTATCCTTTTAATAGTCACTAACTCTTTAATTAACTCATAAGAATAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTTTAATAGTCACTAACTCTTTAATTAACTCATAAGAATAAGAG  350

seq1  GTGTCTTGTTAAATGTAAATTAAATAGATTTAAATAGACAATAGATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGTTAAATGTAAATTAAATAGATTTAAATAGACAATAGATTGCA  400

seq1  AATGGTAGATTTACTGCTAATGCTATAGAAAACCGTTGCTGGAGGTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGATTTACTGCTAATGCTATAGAAAACCGTTGCTGGAGGTTCTA  450

seq1  AGTGTACTTGATACCATCTGCCTCTATCTCTAGTCAAGAAGAAAATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTGATACCATCTGCCTCTATCTCTAGTCAAGAAGAAAATACTA  500

seq1  TTTTCCTTTGAATTC  515
      |||||||||||||||
seq2  TTTTCCTTTGAATTC  515