BAC Information

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BAC

Clone NameB6Ng01-051F08
Chromosome14 (Build37)5 (Build37)
Map Location 10,012,638 - 10,013,80039,363,525 - 39,363,581
singlet/doubletsingletsinglet
Overlap geneLOC100041948
Upstream geneKctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051F08.bB6Ng01-051F08.g
ACCDH875008DH875009
length1,13966
definitionDH875008|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F08, 5' end.DH875009|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,012,638 - 10,013,800)(39,363,525 - 39,363,581)
sequence
gaattcagtccttctgtttcagattccaaagtgctggaattagtgatatg
caatatcacaccctgatgctggttgttttgaggatgtggcatataattcc
agagtgacaaggaaagtactcctttctcccttagttccattctcccttcc
ccctctctcacacacaatttacaattctctctctctctctctctctctct
ctctctctctcaaaggcaaacattaataaaaagttatagttcagtggaag
agcactgagcaagaatgctctgtgaattaaagccagtaatctcatgtcca
gggcagatctcaccctgttccttgtttgtataattttgtactcactcaga
ccttcttccagcacaaatctactacatgtaaggacaaaatgcagtgcgca
gaaaacattgcagaaatgtggctttccaggttctcactgattctgtgtca
ggtttgctatgcatctcctctaggaagaaagggatgtaaaagttttaact
gtttcccagcttctttgatataaacatcccaccatggttgtttgagcttc
cagtttattactatagtgagaattgggagagctgcatccaactgttacac
agagctggagggctagtgacatggttcagtgcagtaaggtgcttgatggc
aagccagaggacctaggcttggtttcctggacatacacagtagaaggcaa
gaaccggctcttattttcatgggccactcccatacataaaactcagtaag
acttttgaagagccttgtgcaccagctctcacactgttgttctgactaat
gcccccactctcacagaattggcctctattttctactgtttcatcaccca
gagagttgatcctggcacccagcatcaccatcccagactttgtccctcca
cttttagtccatcattatctgtcaagagtgggttgaacccaaaccatctc
ttactgtacaggcctctcctttgtcatgttcaggcttccaactcttccct
tgttcttctgtgagctgcctcaggattcactgtagtgataatgcatctgt
tgcatctccatgtctttacaagttacctgcctctaatttctcgtaagatc
actggcccaactgcgttgatcacacttatctctaatccc
tttgttttgattttttttgtttgtttgttgttgttgttgttttggtttgg
tttggggtgttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10012638_10013800
seq2: B6Ng01-051F08.b_44_1182

seq1  GAATTCAGTCCTTCTGTTTCAGATTCCAAAGTGCTGGAATTAGTGATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTTCTGTTTCAGATTCCAAAGTGCTGGAATTAGTGATATG  50

seq1  CAATATCACACCCTGATGCTGGTTGTTTTGAGGATGTGGCATATAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCACACCCTGATGCTGGTTGTTTTGAGGATGTGGCATATAATTCC  100

seq1  AGAGTGACAAGGAAAGTACTCCTTTCTCCCTTAGTTCCATTCTCCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACAAGGAAAGTACTCCTTTCTCCCTTAGTTCCATTCTCCCTTCC  150

seq1  CCCTCTCTCACACACAATTTACAATTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCACACACAATTTACAATTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCAAAGGCAAACATTAATAAAAAGTTATAGTTCAGTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCAAAGGCAAACATTAATAAAAAGTTATAGTTCAGTGGAAG  250

seq1  AGCACTGAGCAAGAATGCTCTGTGAATTAAAGCCAGTAATCTCATGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGCAAGAATGCTCTGTGAATTAAAGCCAGTAATCTCATGTCCA  300

seq1  GGGCAGATCTCACCCTGTTCCTTGTTTGTATAATTTTGTACTCACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATCTCACCCTGTTCCTTGTTTGTATAATTTTGTACTCACTCAGA  350

seq1  CCTTCTTCCAGCACAAATCTACTACATGTAAGGACAAAATGCAGTGCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCAGCACAAATCTACTACATGTAAGGACAAAATGCAGTGCGCA  400

seq1  GAAAACATTGCAGAAATGTGGCTTTCCAGGTTCTCACTGATTCTGTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTGCAGAAATGTGGCTTTCCAGGTTCTCACTGATTCTGTGTCA  450

seq1  GGTTTGCTATGCATCTCCTCTAGGAAGAAAGGGATGTAAAAGTTTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTATGCATCTCCTCTAGGAAGAAAGGGATGTAAAAGTTTTAACT  500

seq1  GTTTCCCAGCTTCTTTGATATAAACATCCCACCATGGTTGTTTGAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAGCTTCTTTGATATAAACATCCCACCATGGTTGTTTGAGCTTC  550

seq1  CAGTTTATTACTATAGTGAGAATTGGGAGAGCTGCATCCAACTGTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTACTATAGTGAGAATTGGGAGAGCTGCATCCAACTGTTACAC  600

seq1  AGAGCTGGAGGGCTAGTGACATGGTTCAGTGCAGTAAGGTGCTTGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGAGGGCTAGTGACATGGTTCAGTGCAGTAAGGTGCTTGATGGC  650

seq1  AAGCCAGAGGACCTAGGCTTGGTTTCCTGGACATACACAGTAGAAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGGACCTAGGCTTGGTTTCCTGGACATACACAGTAGAAGGCAA  700

seq1  GAACCGGCTCTTATTTTCATGGGCCACTCCCATACATAAAACTCAGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGGCTCTTATTTTCATGGGCCACTCCCATACATAAAACTCAGTAAG  750

seq1  ACTTTTGAAGAGCCTTGTGCACCAGCTCTCACACTGTTGTTCTGACTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAAGAGCCTTGTGCACCAGCTCTCACACTGTTGTTCTGACTAAT  800

seq1  GCCCCCACTCTCACAGAATTGGCCTCTATTTTCTACTG-TTCATCACCCA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCCCCACTCTCACAGAATTGGCCTCTATTTTCTACTGTTTCATCACCCA  850

seq1  GAGAGTTGATCCTGGCACCCAGCATCACCATCCCAGACTTTGTCCCTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGATCCTGGCACCCAGCATCACCATCCCAGACTTTGTCCCTCCA  900

seq1  CTTTTAGTCCATTCATTATCTGTCAAGAGTGGGTTGAACCCAAACCATCT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTCCA-TCATTATCTGTCAAGAGTGGGTTGAACCCAAACCATCT  949

seq1  CTTACTGTACAGGCCTCTCCTTTGTCATGTCCAGGCCTTCCAACTCTTCC  999
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  CTTACTGTACAGGCCTCTCCTTTGTCATGTTCAGG-CTTCCAACTCTTCC  998

seq1  CTTGTCCTTCTGTGAAGCTGCCTCAAGGATTTCAACTGTAGTGATTAATG  1049
      ||||| |||||||| ||||||||| ||||||   |||||||||| |||||
seq2  CTTGTTCTTCTGTG-AGCTGCCTC-AGGATT--CACTGTAGTGA-TAATG  1043

seq1  CATCTGTTGCATCTCCATGTCTTTACAATGTCTAACCTGCTGTCTTAAAT  1099
      ||||||||||||||||||||||||||||    | ||||||   ||    |
seq2  CATCTGTTGCATCTCCATGTCTTTACAA---GTTACCTGC---CT---CT  1084

seq1  ATTTTCTCCGTACAGATTCACCTGGCCCCATATCTGCCTGTTGATCACAC  1149
      | ||||| |||| ||| ||| |||||||   | ||||  |||||||||||
seq2  AATTTCT-CGTA-AGA-TCA-CTGGCCC---AACTGC--GTTGATCACAC  1125

seq1  TTATCTCTAATCCC  1163
      ||||||||||||||
seq2  TTATCTCTAATCCC  1139

seq1: chr5_39363525_39363581
seq2: B6Ng01-051F08.g_84_138 (reverse)

seq1  AACAAAAAAACCCAACCCAAACCAAACTAAAACAACAACAACAAACAAAC  50
      ||||||| | ||||| ||||||||||  | ||||||||||||||||||||
seq2  AACAAAACACCCCAAACCAAACCAAA--ACAACAACAACAACAAACAAAC  48

seq1  AAAAAAA  57
      |||||||
seq2  AAAAAAA  55