BAC Information

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BAC

Clone NameB6Ng01-051P05
Chromosome5 (Build37)
Map Location 103,482,479 - 103,483,557
singlet/doubletsinglet
Overlap geneMapk10
Upstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
Downstream geneLOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051P05.bB6Ng01-051P05.g
ACCDH875446DH875447
length3471,077
definitionDH875446|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P05, 5' end.DH875447|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcagcagaggaatgttgaatggctaagaagcacttaaagaaatgttcaaa
gtccttagtcattgggaaaatgccaatcaaaacaactcaatattctgtct
taccccagtcagaatggctaagataaaaacctcaagtgacagcacatgct
ggcaaggatgtggaacacccctaaccccattgttggtgggagtgtaaact
tgtacaatcattttggaaatcaatttgatcaatttggaagtttctcagga
aactgggaatagttctacttcaagatccagctctaccactcctgggcata
taccccaaatatgtcctgctatagctccggcacagtttctttaacat
gaattcaataaaatttaagttaaaacaacatgcacatatttttgtgaata
tttagcatctggaaatttttattttctatggtttctgtggtttcttacag
acacttcaaagactgaaaatttgcagggattataatcaacagactggggt
caagagaccttgatggtgggctcatttgattactaattcaagttaccaaa
ggtctttgagcagtctataggaacagaaattaagatgtcaccacacctgg
ctggtggccagaataaacacttcagagtagagaaggcctgtgtggtaccc
tgggaaagatgttcctaagagggagtttgaaggtaaccaggacctgataa
ctctgcctctgagaataagtacctcactgtcttcacattactagagaagt
gaagcagacatcaatctataggaacaaaagagaaatgtgtatttttatca
aatgccatatctacactaggaggaaatcaaatgctgtgaatacacaggca
gtctcctgctgtgtctagctttctgaaagcgctgcaggcaaggcttgctg
tgttcccatgggccacagcctaagcaagataacctggagtccacaagaca
gctcacacctcccccattgttcctttgcttcaagaggacagttactagaa
acaaactctacacctgtgtccaaatacacaagctgtttgcttgaaaatag
gtccaaacacaaagagtcattttgaatttcttaaatggatgaaatttcaa
taaaattttactgataatttttgaggtttaagaactatgtaaaagcatat
tttggttagtgttgctgactggatagtttgttttttttttttttaagagt
taatgcctggaacaaatacactggattgtgaacactaagaaaataattcc
aatcttactgttgaccagtgttattccccagatgctcaagtcaggaattc
agcttgctcattttcactcaaggcagatcagagctgtaacaattagacaa
gtgaaacactgctcaatttgttccttccagagcaatattttgtgggagtc
atgtcaaatacatttgtgatgagcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_103482479_103483557
seq2: B6Ng01-051P05.g_67_1143

seq1  GAATTCAATAAAATTTAAGTTAAAACAACATGCACATATTTTTGTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAATTTAAGTTAAAACAACATGCACATATTTTTGTGAATA  50

seq1  TTTAGCATCTGGAAATTTTTATTTTCTATGGTTTCTGTGGTTTCTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATCTGGAAATTTTTATTTTCTATGGTTTCTGTGGTTTCTTACAG  100

seq1  ACACTTCAAAGACTGAAAATTTGCAGGGATTATAATCAACAGACTGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAAAGACTGAAAATTTGCAGGGATTATAATCAACAGACTGGGGT  150

seq1  CAAGAGACCTTGATGGTGGGCTCATTTGATTACTAATTCAAGTTACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACCTTGATGGTGGGCTCATTTGATTACTAATTCAAGTTACCAAA  200

seq1  GGTCTTTGAGCAGTCTATAGGAACAGAAATTAAGATGTCACCACACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGAGCAGTCTATAGGAACAGAAATTAAGATGTCACCACACCTGG  250

seq1  CTGGTGGCCAGAATAAACACTTCAGAGTAGAGAAGGCCTGTGTGGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCCAGAATAAACACTTCAGAGTAGAGAAGGCCTGTGTGGTACCC  300

seq1  TGGGAAAGATGTTCCTAAGAGGGAGTTTGAAGGTAACCAGGACCTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGATGTTCCTAAGAGGGAGTTTGAAGGTAACCAGGACCTGATAA  350

seq1  CTCTGCCTCTGAGAATAAGTACCTCACTGTCTTCACATTACTAGAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGAGAATAAGTACCTCACTGTCTTCACATTACTAGAGAAGT  400

seq1  GAAGCAGACATCAATCTATAGGAACAAAAGAGAAATGTGTATTTTTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGACATCAATCTATAGGAACAAAAGAGAAATGTGTATTTTTATCA  450

seq1  AATGCCATATCTACACTAGGAGGAAATCAAATGCTGTGAATACACAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATATCTACACTAGGAGGAAATCAAATGCTGTGAATACACAGGCA  500

seq1  GTCTCCTGCTGTGTCTAGCTTTCTGAAAGCGCTGCAGGCAAGGCTTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGCTGTGTCTAGCTTTCTGAAAGCGCTGCAGGCAAGGCTTGCTG  550

seq1  TGTTCCCATGGGCCACAGCCTAAGCAAGATAACCTGGAGTCCACAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCATGGGCCACAGCCTAAGCAAGATAACCTGGAGTCCACAAGACA  600

seq1  GCTCACACCTCCCCCATTGTTCCTTTGCTTCAAGAGGACAGTTACTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCTCCCCCATTGTTCCTTTGCTTCAAGAGGACAGTTACTAGAA  650

seq1  ACAAACTCTACACCTGTGTCCAAATACACAAGCTGTTTGCTTGAAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCTACACCTGTGTCCAAATACACAAGCTGTTTGCTTGAAAATAG  700

seq1  GTCCAAACACAAAGAGTCATTTTGAATTTCTTAAATGGATGAAATTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACACAAAGAGTCATTTTGAATTTCTTAAATGGATGAAATTTCAA  750

seq1  TAAAATTTTACTGATAATTTTTGAGGTTTAAGAACTATGTAAAAGCATA-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAATTTTACTGATAATTTTTGAGGTTTAAGAACTATGTAAAAGCATAT  800

seq1  TTTGGTTAGTGTTGCTGACTGGATAGTTTTGTTTTTTTTTTTTTAAGAGT  849
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTTGGTTAGTGTTGCTGACTGGATAGTTTGTTTTTTTTTTTTTTAAGAGT  850

seq1  TAATGCCTGGAACAAATACACTGGATTGTGAACACTAAGAAAATAATTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTGGAACAAATACACTGGATTGTGAACACTAAGAAAATAATTCC  900

seq1  AATCTTACTGTTGACCAGTGTTA-TCCCCAGATGCTCAAGTCAGGGATTC  948
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  AATCTTACTGTTGACCAGTGTTATTCCCCAGATGCTCAAGTCAGGAATTC  950

seq1  AGCTTGCTCATTTTCCACCCAAGGCAGATCAGAGCTGTAACCAATTAGAC  998
      |||||||||||||| ||| ||||||||||||||||||||| |||||||||
seq2  AGCTTGCTCATTTT-CACTCAAGGCAGATCAGAGCTGTAA-CAATTAGAC  998

seq1  AAGTGAAACACTGCTC-ATTTGTTCTTTCACAGAGCACATATTTTGT-GG  1046
      |||||||||||||||| |||||||| ||| ||||||| ||||||||| ||
seq2  AAGTGAAACACTGCTCAATTTGTTCCTTC-CAGAGCA-ATATTTTGTGGG  1046

seq1  AGTCCATGTCAAATACTATTGTGAATGAGCAAG  1079
      ||| ||||||||||||  ||||| |||||||||
seq2  AGT-CATGTCAAATACATTTGTG-ATGAGCAAG  1077