BAC Information

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BAC

Clone NameB6Ng01-052A17
Chromosome5 (Build37)
Map Location 131,104,186 - 131,137,930
singlet/doubletdoublet
Overlap geneCaln1
Upstream geneMmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052A17.bB6Ng01-052A17.g
ACCDH875514DH875515
length1,1751,158
definitionDH875514|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A17, 5' end.DH875515|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,136,738 - 131,137,930)(131,104,186 - 131,105,372)
sequence
gaattcagctagcaacacccaaatcaggtggcttacagctacctataact
ccagctccaggggatctgacaccctctcctggactgtgagagcatctgca
tgtacaaatgcacacagagacacacaaagacacatacttgaaaaataaaa
aagtctttgaaatgaataaatagctcttatctttgtaggtgccatgtaat
tatttaaaagaacgagtaataataagaaacaggagatagtcgattgacat
tttctagatgtctggtatatgagtattatgcagatttatctcaactccaa
cactatgaagaattctcccagttcacatcttatcagtgatagacattagg
caagaaggggttaaaaacagtgagtagaaaattccagagagctagcacat
ggcagtgcaagggctcaacttgggtctcaatatcaaccctacagtagacc
atgcccctctgcatcaaagaccccagcacacagccttgataaggctccta
tttgtctccaaagtctgagagttacaatgtgttttcctctcttagccccg
aggaaaggatttaatgggtaattgggaaaggtgacctctgggaattgtta
atgtaaatggccactgtctaaaagccacatgatcctcagattgctactgt
gcctgcagtgaacatccttagtcatcctcacagatggtcggttccggagg
agtccgggcactcacatagaacttagcacacaacttcaatttctcccact
ccccaaaagaattggtctgataaacaagtctaaacagccccattaaaaaa
tggggctcagagttaaacaaagagttctcacctgaggaataccgaatggc
tgagaagcacctgaaaaaatgttcagcatccttaatcatcagggaaatgc
aaatcaaacaaccctgagattccatctcacaccagtcagaatggctaaga
tcaaaaattcagtaacagcggatgctggcaagatgtgagaagaggaacac
tcctccattgttgtgggttgcaaacttgtacaacactctggaattcagtc
tggcggtctcaagaattggaaatagtactacaaaggatccgcaatacttt
cttgggcatatatccagaagtgttccactgtagaaagacaacatgtcctc
atatgttctatacaccttatttata
gaattcaggaagctaaggaaactggcaaggttcaggaatttaatgaaaca
gattaagcacagaaagttacaagattgacatggctaggaaatggagttgc
tcacagttggttcatcccacccactaactgaagacagtttcctaccgtcc
attttatcaagacaattcctcattgagaatctctttccaggtgatcctaa
gcctagaattgtccaggtgacaattatagccaaccatggcacttcctaat
agcaccaccgctagagaccaagcattcaacatatgagtctctgggatgac
atttcctattcaaaccatagcatcccttggaaaggaaaaaaaaaaaaaaa
ccagagaaaagaaatcattctaaccaattctgtggagactcatggctctt
aaataactgtggatagtagagatgatatatttacgatttgggagagctgt
gaagggcatcagtgtgattgtgtctctagagcctatgtatgaacaactca
gcacggtaccatacagagcctcgtgggcaggaggtaattggatacatttt
atggctcagaacatagtttatgctttctgttctggacttctgaggcagca
acataaaaatggactttgcctggggagatagtaacataacctcctcatcc
cagacagggaacccatgacatcttaaggtttgtaccaacatccaacatgg
tgacccaataagtttttctggggtctactcacaagaatgtgggtgaaggg
acacaggagaacaataattcaaaggtagccacatctctgaaaagcccacc
ctcacacagaggacaacttacaaaaactccgactccaaacctttctttac
aatttgcagtcagctggacaggtctgggattaaccctttcctcctcacat
tacttttggtcatgatgttttacggcagtattagaaagcaagcttggacc
ttgcttctatacagttgggaggagccttagagaccttgcacatttcagtt
ttcttgagcacctgcccactcatgcaagagcattcattcagaggaaaatg
ctaacagcatgcctagcatgatgtagctgtctgagaaatgctgacaagaa
tagatgctggtcatttggagatgcagaggggcaaggctatgtcttctagg
cttatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_131136738_131137930
seq2: B6Ng01-052A17.b_45_1219 (reverse)

seq1  TATAAATAAGGCTGCTAT-GAACATA-GTGGAGCATG-TGTCTTTCTTAC  47
      ||||||||||| || ||| ||||||| | ||| |||| |||||||||   
seq2  TATAAATAAGG-TG-TATAGAACATATGAGGA-CATGTTGTCTTTCT--A  45

seq1  CAGTTGGAACATCTTCTGGATATATGCCCAGGAAAGGTATTGCGGGATCC  97
      ||| ||||||| |||||||||||||||||| |||| ||||||| ||||||
seq2  CAG-TGGAACA-CTTCTGGATATATGCCCAAGAAA-GTATTGC-GGATCC  91

seq1  TCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCA  147
      | | |||||||||| ||||||| | ||||  ||||||||||||| |||||
seq2  T-TTGTAGTACTATTTCCAATTCT-TGAG--ACCGCCAGACTGAATTCCA  137

seq1  GAGTGGTTGTACAAGTTTGCAAACCCACCAACAATGGAGGAGTGTTCCTC  197
      |||| ||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GAGT-GTTGTACAAGTTTGC-AACCCA-CAACAATGGAGGAGTGTTCCTC  184

seq1  TTTCTCCACATCCTTGCCAGCATCCGCTGTTACCTGAATTTTTGATCTTA  247
       |||| ||||| |||||||||||||||||||| |||||||||||||||||
seq2  -TTCT-CACAT-CTTGCCAGCATCCGCTGTTA-CTGAATTTTTGATCTTA  230

seq1  GCCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCAT  297
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTG-TTTGATTTGCAT  279

seq1  TTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCA  329

seq1  TTCGGTATTCCTCAGGTGAGAACTCTTTGTTTAACTCTGAGCCCCATTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTATTCCTCAGGTGAGAACTCTTTGTTTAACTCTGAGCCCCATTTT  379

seq1  TTAATGGGGCTGTTTAGACTTGTTTATCAGACCAATTCTTTTGGGGAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGGCTGTTTAGACTTGTTTATCAGACCAATTCTTTTGGGGAGTG  429

seq1  GGAGAAATTGAAGTTGTGTGCTAAGTTCTATGTGAGTGCCCGGACTCCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTGAAGTTGTGTGCTAAGTTCTATGTGAGTGCCCGGACTCCTC  479

seq1  CGGAACCGACCATCTGTGAGGATGACTAAGGATGTTCACTGCAGGCACAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCGACCATCTGTGAGGATGACTAAGGATGTTCACTGCAGGCACAG  529

seq1  TAGCAATCTGAGGATCATGTGGCTTTTAGACAGTGGCCATTTACATTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCTGAGGATCATGTGGCTTTTAGACAGTGGCCATTTACATTAAC  579

seq1  AATTCCCAGAGGTCACCTTTCCCAATTACCCATTAAATCCTTTCCTCGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGAGGTCACCTTTCCCAATTACCCATTAAATCCTTTCCTCGGG  629

seq1  GCTAAGAGAGGAAAACACATTGTAACTCTCAGACTTTGGAGACAAATAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGAGGAAAACACATTGTAACTCTCAGACTTTGGAGACAAATAGG  679

seq1  AGCCTTATCAAGGCTGTGTGCTGGGGTCTTTGATGCAGAGGGGCATGGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATCAAGGCTGTGTGCTGGGGTCTTTGATGCAGAGGGGCATGGTC  729

seq1  TACTGTAGGGTTGATATTGAGACCCAAGTTGAGCCCTTGCACTGCCATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGGGTTGATATTGAGACCCAAGTTGAGCCCTTGCACTGCCATGT  779

seq1  GCTAGCTCTCTGGAATTTTCTACTCACTGTTTTTAACCCCTTCTTGCCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTCTCTGGAATTTTCTACTCACTGTTTTTAACCCCTTCTTGCCTA  829

seq1  ATGTCTATCACTGATAAGATGTGAACTGGGAGAATTCTTCATAGTGTTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATCACTGATAAGATGTGAACTGGGAGAATTCTTCATAGTGTTGG  879

seq1  AGTTGAGATAAATCTGCATAATACTCATATACCAGACATCTAGAAAATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGATAAATCTGCATAATACTCATATACCAGACATCTAGAAAATGT  929

seq1  CAATCGACTATCTCCTGTTTCTTATTATTACTCGTTCTTTTAAATAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGACTATCTCCTGTTTCTTATTATTACTCGTTCTTTTAAATAATTA  979

seq1  CATGGCACCTACAAAGATAAGAGCTATTTATTCATTTCAAAGACTTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACCTACAAAGATAAGAGCTATTTATTCATTTCAAAGACTTTTTT  1029

seq1  ATTTTTCAAGTATGTGTCTTTGTGTGTCTCTGTGTGCATTTGTACATGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAGTATGTGTCTTTGTGTGTCTCTGTGTGCATTTGTACATGCA  1079

seq1  GATGCTCTCACAGTCCAGGAGAGGGTGTCAGATCCCCTGGAGCTGGAGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTCACAGTCCAGGAGAGGGTGTCAGATCCCCTGGAGCTGGAGTT  1129

seq1  ATAGGTAGCTGTAAGCCACCTGATTTGGGTGTTGCTAGCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAGCTGTAAGCCACCTGATTTGGGTGTTGCTAGCTGAATTC  1175

seq1: chr5_131104186_131105372
seq2: B6Ng01-052A17.g_67_1224

seq1  GAATTCAGGAAGCTAAGGAAACTGGCAAGGTTCAGGAATTTAATGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGCTAAGGAAACTGGCAAGGTTCAGGAATTTAATGAAACA  50

seq1  GATTAAGCACAGAAAGTTACAAGATTGACATGGCTAGGAAATGGAGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGCACAGAAAGTTACAAGATTGACATGGCTAGGAAATGGAGTTGC  100

seq1  TCACAGTTGGTTCATCCCACCCACTAACTGAAGACAGTTTCCTACCGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGGTTCATCCCACCCACTAACTGAAGACAGTTTCCTACCGTCC  150

seq1  ATTTTATCAAGACAATTCCTCATTGAGAATCTCTTTCCAGGTGATCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCAAGACAATTCCTCATTGAGAATCTCTTTCCAGGTGATCCTAA  200

seq1  GCCTAGAATTGTCCAGGTGACAATTATAGCCAACCATGGCACTTCCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAATTGTCCAGGTGACAATTATAGCCAACCATGGCACTTCCTAAT  250

seq1  AGCACCACCGCTAGAGACCAAGCATTCAACATATGAGTCTCTGGGATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACCGCTAGAGACCAAGCATTCAACATATGAGTCTCTGGGATGAC  300

seq1  ATTTCCTATTCAAACCATAGCATCCCTTGGAAAGGAAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTATTCAAACCATAGCATCCCTTGGAAAGGAAAAAAAAAAAAAAA  350

seq1  CCAGAGAAAAGAAATCATTCTAACCAATTCTGTGGAGACTCATGGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAAGAAATCATTCTAACCAATTCTGTGGAGACTCATGGCTCTT  400

seq1  AAATAACTGTGGATAGTAGAGATGATATATTTACGATTTGGGAGAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGTGGATAGTAGAGATGATATATTTACGATTTGGGAGAGCTGT  450

seq1  GAAGGGCATCAGTGTGATTGTGTCTCTAGAGCCTATGTATGAACAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCATCAGTGTGATTGTGTCTCTAGAGCCTATGTATGAACAACTCA  500

seq1  GCACGGTACCATACAGAGCCTCGTGGGCAGGAGGTAATTGGATACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTACCATACAGAGCCTCGTGGGCAGGAGGTAATTGGATACATTTT  550

seq1  ATGGCTCAGAACATAGTTTATGCTTTCTGTTCTGGACTTCTGAGGCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGAACATAGTTTATGCTTTCTGTTCTGGACTTCTGAGGCAGCA  600

seq1  ACATAAAAATGGACTTTGCCTGGGGAGATAGTAACATAACCTCCTCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAATGGACTTTGCCTGGGGAGATAGTAACATAACCTCCTCATCC  650

seq1  CAGACAGGGAACCCATGACATCTTAAGGTTTGTACCAACATCCAACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGAACCCATGACATCTTAAGGTTTGTACCAACATCCAACATGG  700

seq1  TGACCCAATAAGTTTTTCTGGGGTCTACTCACAAGAATGTGGGTGAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAATAAGTTTTTCTGGGGTCTACTCACAAGAATGTGGGTGAAGGG  750

seq1  ACACAGGAGAACAATAATTCAAAGGTAGCCACATCTCTGAAAAGCCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGAACAATAATTCAAAGGTAGCCACATCTCTGAAAAGCCCACC  800

seq1  CTCACACAGAGGACAACTTACAAAAACTCCGACTCCAAACCTTTCTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGAGGACAACTTACAAAAACTCCGACTCCAAACCTTTCTTTAC  850

seq1  AATTTGCAGTCAGCTGGACAGGTCTGGGATTAACCCTTTCCTCCTCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAGTCAGCTGGACAGGTCTGGGATTAACCCTTTCCTCCTCACAT  900

seq1  TACTTTTGGTCATGATGTTTTACGGCAGTATTAGAAAGCAAGCTTGGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGGTCATGATGTTTTACGGCAGTATTAGAAAGCAAGCTTGGACC  950

seq1  TTGCTTCTATACAGTTGGGAGGAGCCTTAGAGAACCTTGCACATTTCAGT  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGCTTCTATACAGTTGGGAGGAGCCTTAGAG-ACCTTGCACATTTCAGT  999

seq1  TTTCTTGAGCACCCTGCCCCACTCATGCAAAGAGCATTTCAATTCAGAGG  1050
      ||||||||||| |||| ||||||||||| |||||||||   |||||||||
seq2  TTTCTTGAGCA-CCTG-CCCACTCATGC-AAGAGCATT--CATTCAGAGG  1044

seq1  AAAATGCTATACAGCAATGCCCTAGCATGATGGTAGCTGTCTGAGAGAAA  1100
      ||||||||| ||||| ||| ||||||||||| ||||||||||  ||||||
seq2  AAAATGCTA-ACAGC-ATG-CCTAGCATGAT-GTAGCTGTCT--GAGAAA  1088

seq1  TGGTCTTGACAAAGAATAGGATGGGCTGGGTCCATGTGGAGATGCCAAAG  1150
      ||    |||| ||||||| |||  |||||   ||| |||||||||   ||
seq2  TG---CTGAC-AAGAATA-GAT--GCTGG--TCATTTGGAGATGC---AG  1126

seq1  AGTGCCAAGTGCTA-GTGTTCTTTCATAGGCTTATAGG  1187
      || | |||| |||| || |||     ||||||||||||
seq2  AGGGGCAAG-GCTATGTCTTC-----TAGGCTTATAGG  1158