BAC Information

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BAC

Clone NameB6Ng01-052B09
Chromosome5 (Build37)
Map Location 144,027,403 - 144,101,614
singlet/doubletdoublet
Overlap geneZfp316, Gm792, E130309D02Rik, Zdhhc4
Upstream geneMmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12
Downstream geneGrid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052B09.bB6Ng01-052B09.g
ACCDH875546DH875547
length1,089873
definitionDH875546|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B09, 5' end.DH875547|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,100,528 - 144,101,614)(144,027,403 - 144,028,273)
sequence
gaattcaaacagatgagcgaatgagggatgttcttgttcaagccaccaca
agaggccatggagaaatgccaccctctggcttgtttgcttcccacggctc
ctcagactgctttcttgttctcagaaccacttgcccactggtggcaccgc
ccacagtgagctggacacgcccacaccaaccatcaatcaagacaattccc
ttgcctccttgccaatctaatggagatattttctcagttaggattccttt
tctctgataactctataaataaataaatctaaccagggcatcaggaatgg
cggggagagtctttagttactcagtgatcacgtatgtgagtacactgtca
ctgtcttcagacagcatcagatctcattacagatggttgtgagccaccat
gtggttgccgggaattgaactcaggacctctggaagagcaaccagtgctc
ttaaccaccacgccacctctccagtcttcactcaacccttcttaaaagaa
acaaaacaaaacaaaaaacaaaagtaatttctgttgttgaagatactctc
tctgtagcgtttttttcttggtggccttagtaaactaatggataatttag
actaggtggacggatatggtaaggccacagggacgaaacttctgcacagc
aaagcaaatgaggtcagacagagatttattgggaaaacttaagacattgt
cttgaacgtatccagcatcttgctctctttctgtcaagtctatccaacat
atccagcatttctaaagacagaggccaggctagaacctatatttttcagt
caagcactcctgcccaaagcctgtgtatatctgtactgtgcttttaagac
ctttgcttgacaggcagggtcggcagggtgtagtggggtttgtgttaaat
ctgtgggcctagcttgaagaggtggaagacagaaatgattgttaattcaa
ggtcatccttggctatacaatgcatgaggtcaaaggctagtctgggtata
tgaaatcctgttttcaatcaaacccaaaccaccatacatggagtagctta
accaactccacatatgagctgagttgaccaatgaatgat
gaattcattcctatgtctcttttcaccaccctgccacccagtacctatcc
tgtaagtatctcagatctcaataggactattttgcaaagcaaggcaggcc
acccatgcatgctgagttccaaaaagatcctgaaatgccaggccacagca
gacactggagccacccccagcagacagcattgcctcaggatgcttaaaag
cagactgtggcaggtaaagatgcccagggccatgagaacagtctgaccac
tgggcttcgtattcccatgggcacacgtgagcaatctgcttaggctgggc
tcacctctaacccatcccttctgttcagacatctttaaaacctatgctct
aggggctggagagatggatcagcagtttggagcactggctgctcttctag
aggaccttagttcaattcccagaacccgcatggtggctcacaaccgtctc
taactccagtgtccgggattccatcccctttcctcttctctgagggcacc
agacatacagacatatgtggaggcaagacacttgcacatacactgttttt
aattaagatctagactttggtactggggaggtggctcagtcagtcacatg
cttgcttcccatgtgtgacaacctgagttcattctttagaatgtaaaagc
taggcctgaggtacatgccagtaatcccagtaccgtgaagacagagacag
gaggttccatgggatttgccagccagccgaggtggccaactcagtgatag
acgctgtctcaaaaaacctaaggtgggacagcaattgaagacatctacca
ttgacttcaggcctccacacacatatttcaaactctctctttctctcttt
ctctctctctctctctcacacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144100528_144101614
seq2: B6Ng01-052B09.b_46_1134 (reverse)

seq1  ATCATTCATTAGTCAACCTCAGCTCATATGTGGAGTTGGTTAAGCTACTC  50
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ATCATTCATTGGTCAA-CTCAGCTCATATGTGGAGTTGGTTAAGCTACTC  49

seq1  CATGTATGGTGGTTTGGTTTGGTTTTGAAACAGGATTTCATATAACCCAG  100
      ||||||||||||||||| || | ||  |||||||||||||||| ||||||
seq2  CATGTATGGTGGTTTGGGTTTGATTGAAAACAGGATTTCATAT-ACCCAG  98

seq1  ACTAGCCTTTGACCTCATTGCATTGTATAGCCAAGGATGACCTTGAATTA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTAGCCTTTGACCTCA-TGCATTGTATAGCCAAGGATGACCTTGAATTA  147

seq1  ACAATCA-TTCTGTC-TCCACCTC-TCAAGCTAGGCCCACAGATTTAACA  197
      ||||||| ||||||| |||||||| |||||||||||||||||||||||||
seq2  ACAATCATTTCTGTCTTCCACCTCTTCAAGCTAGGCCCACAGATTTAACA  197

seq1  CAA--CCCACTACACCCTGCCGACCCTGCCTGTCAAGCAAAGGTCTTAAA  245
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCACTACACCCTGCCGACCCTGCCTGTCAAGCAAAGGTCTTAAA  247

seq1  AGCACAGTACAGATATACACAGGCTTTGGGCAGGAGTGCTTGACTGAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTACAGATATACACAGGCTTTGGGCAGGAGTGCTTGACTGAAAA  297

seq1  ATATAGGTTCTAGCCTGGCCTCTGTCTTTAGAAATGCTGGATATGTTGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGTTCTAGCCTGGCCTCTGTCTTTAGAAATGCTGGATATGTTGGA  347

seq1  TAGACTTGACAGAAAGAGAGCAAGATGCTGGATACGTTCAAGACAATGTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGACAGAAAGAGAGCAAGATGCTGGATACGTTCAAGACAATGTC  397

seq1  TTAAGTTTTCCCAATAAATCTCTGTCTGACCTCATTTGCTTTGCTGTGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTCCCAATAAATCTCTGTCTGACCTCATTTGCTTTGCTGTGCA  447

seq1  GAAGTTTCGTCCCTGTGGCCTTACCATATCCGTCCACCTAGTCTAAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCGTCCCTGTGGCCTTACCATATCCGTCCACCTAGTCTAAATTA  497

seq1  TCCATTAGTTTACTAAGGCCACCAAGAAAAAAACGCTACAGAGAGAGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGTTTACTAAGGCCACCAAGAAAAAAACGCTACAGAGAGAGTAT  547

seq1  CTTCAACAACAGAAATTACTTTTGTTTTTTGTTTTGTTTTGTTTCTTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAACAGAAATTACTTTTGTTTTTTGTTTTGTTTTGTTTCTTTTA  597

seq1  AGAAGGGTTGAGTGAAGACTGGAGAGGTGGCGTGGTGGTTAAGAGCACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTTGAGTGAAGACTGGAGAGGTGGCGTGGTGGTTAAGAGCACTG  647

seq1  GTTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGCAACCACATGGTGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGCAACCACATGGTGGC  697

seq1  TCACAACCATCTGTAATGAGATCTGATGCTGTCTGAAGACAGTGACAGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAATGAGATCTGATGCTGTCTGAAGACAGTGACAGTG  747

seq1  TACTCACATACGTGATCACTGAGTAACTAAAGACTCTCCCCGCCATTCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATACGTGATCACTGAGTAACTAAAGACTCTCCCCGCCATTCCT  797

seq1  GATGCCCTGGTTAGATTTATTTATTTATAGAGTTATCAGAGAAAAGGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTGGTTAGATTTATTTATTTATAGAGTTATCAGAGAAAAGGAAT  847

seq1  CCTAACTGAGAAAATATCTCCATTAGATTGGCAAGGAGGCAAGGGAATTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGAGAAAATATCTCCATTAGATTGGCAAGGAGGCAAGGGAATTG  897

seq1  TCTTGATTGATGGTTGGTGTGGGCGTGTCCAGCTCACTGTGGGCGGTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTGATGGTTGGTGTGGGCGTGTCCAGCTCACTGTGGGCGGTGCC  947

seq1  ACCAGTGGGCAAGTGGTTCTGAGAACAAGAAAGCAGTCTGAGGAGCCGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGGCAAGTGGTTCTGAGAACAAGAAAGCAGTCTGAGGAGCCGTG  997

seq1  GGAAGCAAACAAGCCAGAGGGTGGCATTTCTCCATGGCCTCTTGTGGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAACAAGCCAGAGGGTGGCATTTCTCCATGGCCTCTTGTGGTGG  1047

seq1  CTTGAACAAGAACATCCCTCATTCGCTCATCTGTTTGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAAGAACATCCCTCATTCGCTCATCTGTTTGAATTC  1089

seq1: chr5_144027403_144028273
seq2: B6Ng01-052B09.g_70_941

seq1  GAATTCATTCCTATGTCTCTTTTCACCACCCTGCCACCCAGTACCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTATGTCTCTTTTCACCACCCTGCCACCCAGTACCTATCC  50

seq1  TGTAAGTATCTCAGATCTCAATAGGACTATTTTGCAAAGCAAGGCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATCTCAGATCTCAATAGGACTATTTTGCAAAGCAAGGCAGGCC  100

seq1  ACCCATGCATGCTGAGTTCCAAAAAGATCCTGAAATGCCAGGCCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCATGCTGAGTTCCAAAAAGATCCTGAAATGCCAGGCCACAGCA  150

seq1  GACACTGGAGCCACCCCCAGCAGACAGCATTGCCTCAGGATGCTTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGAGCCACCCCCAGCAGACAGCATTGCCTCAGGATGCTTAAAAG  200

seq1  CAGACTGTGGCAGGTAAAGATGCCCAGGGCCATGAGAACAGTCTGACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGGCAGGTAAAGATGCCCAGGGCCATGAGAACAGTCTGACCAC  250

seq1  TGGGCTTCGTATTCCCATGGGCACACGTGAGCAATCTGCTTAGGCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCGTATTCCCATGGGCACACGTGAGCAATCTGCTTAGGCTGGGC  300

seq1  TCACCTCTAACCCATCCCTTCTGTTCAGACATCTTTAAAACCTATGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTAACCCATCCCTTCTGTTCAGACATCTTTAAAACCTATGCTCT  350

seq1  AGGGGCTGGAGAGATGGATCAGCAGTTTGGAGCACTGGCTGCTCTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGAGATGGATCAGCAGTTTGGAGCACTGGCTGCTCTTCTAG  400

seq1  AGGACCTTAGTTCAATTCCCAGAACCCGCATGGTGGCTCACAACCGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTAGTTCAATTCCCAGAACCCGCATGGTGGCTCACAACCGTCTC  450

seq1  TAACTCCAGTGTCCGGGATTCCATCCCCTTTCCTCTTCTCTGAGGGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTGTCCGGGATTCCATCCCCTTTCCTCTTCTCTGAGGGCACC  500

seq1  AGACATACAGACATATGTGGAGGCAAGACACTTGCACATACACTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAGACATATGTGGAGGCAAGACACTTGCACATACACTGTTTTT  550

seq1  AATTAAGATCTAGACTTTGGTACTGGGGAGGTGGCTCAGTCAGTCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATCTAGACTTTGGTACTGGGGAGGTGGCTCAGTCAGTCACATG  600

seq1  CTTGCTTCCCATGTGTGACAACCTGAGTTCATTCTTTAGAATGTAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCCATGTGTGACAACCTGAGTTCATTCTTTAGAATGTAAAAGC  650

seq1  TAGGCCTGAGGTACATGCCAGTAATCCCAGTACCGTGAAGACAGAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGAGGTACATGCCAGTAATCCCAGTACCGTGAAGACAGAGACAG  700

seq1  GAGGTTCCATGGGATTTGCCAGCCAGCCGAGGTGGCCAACTCAGTGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCATGGGATTTGCCAGCCAGCCGAGGTGGCCAACTCAGTGATAG  750

seq1  ACGCTGTCTCAAAAAACCTAAGGT-GGACAGCAATTGAAGACATCTACCA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGCTGTCTCAAAAAACCTAAGGTGGGACAGCAATTGAAGACATCTACCA  800

seq1  TTGACTTCAGGCCTCCACACACATTATTCAAACTCTCTCTCTCTCTCTCT  849
      ||||||||||||||||||||||||  |||||||||||||| ||||||| |
seq2  TTGACTTCAGGCCTCCACACACATATTTCAAACTCTCTCTTTCTCTCTTT  850

seq1  CTCTCTCTCTCTCTCTCACACA  871
      ||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCACACA  872