BAC Information

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BAC

Clone NameB6Ng01-052E10
Chromosome5 (Build37)
Map Location 30,856,090 - 31,011,273
singlet/doubletdoublet
Overlap geneKcnk3, 4930471M23Rik, Cenpa
Upstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
Downstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E10.bB6Ng01-052E10.g
ACCDH875675DH875676
length1,089587
definitionDH875675|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E10, 5' end.DH875676|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,010,178 - 31,011,273)(30,856,090 - 30,856,676)
sequence
gaattctaaaggccgtctgcttgacacaaaaccaacctctcctgcttctg
cttcccctcctgtcccaggagatcccctccagagcaaattgtaaatgact
cctggacagcttattgacattccactggccccagaccatctctccccttc
caacagtttctcctctgtttccttctgggaaagggattctccaggacgcc
tagaggctctgtgttaagtaagagacctcttcctctgaggggggcatggt
gggatacagctttaatccgagcacttgggaagcagagggaggaggatctt
catgagttcaaggccagcctggtctgtagctgcaggacagccagcagtgc
acagtgcccaccttcagagaaggccttctcttttcatctatttagttatt
aaaataactgtgagcagagagtcaaacctgtgtatctaggtcagtgtcac
agagccggagtcaaaacagggacaagaaagcagaaaaatggatactggga
gaggaagaatgcacacagaaaacaggagagaaatctaaggctctgcagag
atggggtttcaggagagtcaagggctgagttagctcttgtctagaatgtg
tgaggtcctgcattcagttgtcattataaacaagcacaagcaaacaaaga
gtcaatcagttacaaaaacaggggtcaatcagttacaaaaacaggggcag
tgggaaatgagacccaggccacccagcctgacacaaaagacacaggagag
gggatccagagggggctggaggtgggagcttagatgaaaacagcaaactc
agttctagtgtgtcaacatggtctgaaatgctgaggaacactccagaaat
cccccctagactatgacacaattttctttattatatttgtttttaattcc
aattttgaaataaagccttcttttccaatcagaccgttcgaaacccacat
cctggaagaaccacagctgccaagatctagctgctctagccccgtctttg
aaatccactacaaacttgcattattcacacacagaaaattcttaaggtag
aaggacttagcatgcggagcctccaatgccagcattatc
gaattctacttttgtgagaaaacactgagtcgatggtcattcagttgcct
atggagccgcacctgtgtgtggccaaatagccgagtgtcagtgataggac
agggctctcatccaaggctcagggaggctcctctgaggaggggacactga
actagacctgagagaacagtagcagaggtggccatgagggaaagtgcttc
ctggtaatgcgggagcttgtggagaggctcccacgaaagaaactcaggct
gctggagaacagagacgcctacgggcaagacccaggagatgggggtggaa
gatggcttggggtagatcttgggggcagatcagtgctttctgtgaaaagc
aatgtgaagtcattgtagagcgtcattctgagaaatgacataatctgatg
tctgttttcaagggctcccttcctcggagagtggctggcgaatgtgctgg
aagaaggccacgaggctggggacacgtgtgaggagactacggagtaagcc
gcaggatggccgggacaaggttgtcgatgtctgagagaacctaatgacat
catatggcgtctctggactatggggtggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31010178_31011273
seq2: B6Ng01-052E10.b_42_1130 (reverse)

seq1  GATAATGCTGGCATTGTGAGGCTCCGCAATTGCTAGGTTCCTTCTGACTT  50
      |||||||||||||||| |||||||||||  ||||| | ||||||| || |
seq2  GATAATGCTGGCATTG-GAGGCTCCGCA--TGCTAAG-TCCTTCT-ACCT  45

seq1  TAAGAA-TCTCTGTGTGTGAAATAAATGCAAGTTTGTAGTGGATTTCAAA  99
      |||||| | ||||||||||||   ||||||||||||||||||||||||||
seq2  TAAGAATTTTCTGTGTGTGAA--TAATGCAAGTTTGTAGTGGATTTCAAA  93

seq1  GACGGGGCTAGAGCAGCTAGATTCTTGGCAGCTGTGGTTCTTCCAGGATG  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACGGGGCTAGAGCAGCTAGA-TCTTGGCAGCTGTGGTTCTTCCAGGATG  142

seq1  TGGGTTTCGAACGGTCTGATTGGAAAAGAAGGCTTTATTTCAAAATTGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCGAACGGTCTGATTGGAAAAGAAGGCTTTATTTCAAAATTGGA  192

seq1  ATTAAAAACAAATATAATAAAGAAAATTGTGTCATAGTCTAGGGGGGATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAAATATAATAAAGAAAATTGTGTCATAGTCTAGGGGGGATT  242

seq1  TCTGGAGTGTTCCTCAGCATTTCAGACCATGTTGACACACTAGAACTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGTTCCTCAGCATTTCAGACCATGTTGACACACTAGAACTGAG  292

seq1  TTTGCTGTTTTCATCTAAGCTCCCACCTCCAGCCCCCTCTGGATCCCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTTTCATCTAAGCTCCCACCTCCAGCCCCCTCTGGATCCCCTC  342

seq1  TCCTGTGTCTTTTGTGTCAGGCTGGGTGGCCTGGGTCTCATTTCCCACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCTTTTGTGTCAGGCTGGGTGGCCTGGGTCTCATTTCCCACTG  392

seq1  CCCCTGTTTTTGTAACTGATTGACCCCTGTTTTTGTAACTGATTGACTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTTTTTGTAACTGATTGACCCCTGTTTTTGTAACTGATTGACTCT  442

seq1  TTGTTTGCTTGTGCTTGTTTATAATGACAACTGAATGCAGGACCTCACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTGTGCTTGTTTATAATGACAACTGAATGCAGGACCTCACAC  492

seq1  ATTCTAGACAAGAGCTAACTCAGCCCTTGACTCTCCTGAAACCCCATCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGACAAGAGCTAACTCAGCCCTTGACTCTCCTGAAACCCCATCTC  542

seq1  TGCAGAGCCTTAGATTTCTCTCCTGTTTTCTGTGTGCATTCTTCCTCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCTTAGATTTCTCTCCTGTTTTCTGTGTGCATTCTTCCTCTCC  592

seq1  CAGTATCCATTTTTCTGCTTTCTTGTCCCTGTTTTGACTCCGGCTCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCATTTTTCTGCTTTCTTGTCCCTGTTTTGACTCCGGCTCTGTG  642

seq1  ACACTGACCTAGATACACAGGTTTGACTCTCTGCTCACAGTTATTTTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACCTAGATACACAGGTTTGACTCTCTGCTCACAGTTATTTTAAT  692

seq1  AACTAAATAGATGAAAAGAGAAGGCCTTCTCTGAAGGTGGGCACTGTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATAGATGAAAAGAGAAGGCCTTCTCTGAAGGTGGGCACTGTGCA  742

seq1  CTGCTGGCTGTCCTGCAGCTACAGACCAGGCTGGCCTTGAACTCATGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTGTCCTGCAGCTACAGACCAGGCTGGCCTTGAACTCATGAAG  792

seq1  ATCCTCCTCCCTCTGCTTCCCAAGTGCTCGGATTAAAGCTGTATCCCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTCCCTCTGCTTCCCAAGTGCTCGGATTAAAGCTGTATCCCACC  842

seq1  ATGCCCCCCTCAGAGGAAGAGGTCTCTTACTTAACACAGAGCCTCTAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCCTCAGAGGAAGAGGTCTCTTACTTAACACAGAGCCTCTAGGC  892

seq1  GTCCTGGAGAATCCCTTTCCCAGAAGGAAACAGAGGAGAAACTGTTGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGAATCCCTTTCCCAGAAGGAAACAGAGGAGAAACTGTTGGAA  942

seq1  GGGGAGAGATGGTCTGGGGCCAGTGGAATGTCAATAAGCTGTCCAGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGATGGTCTGGGGCCAGTGGAATGTCAATAAGCTGTCCAGGAGT  992

seq1  CATTTACAATTTGCTCTGGAGGGGATCTCCTGGGACAGGAGGGGAAGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAATTTGCTCTGGAGGGGATCTCCTGGGACAGGAGGGGAAGCAG  1042

seq1  AAGCAGGAGAGGTTGGTTTTGTGTCAAGCAGACGGCCTTTAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGAGGTTGGTTTTGTGTCAAGCAGACGGCCTTTAGAATTC  1089

seq1: chr5_30856090_30856676
seq2: B6Ng01-052E10.g_69_655

seq1  GAATTCTACTTTTGTGAGAAAACACTGAGTCGATGGTCATTCAGTTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTTGTGAGAAAACACTGAGTCGATGGTCATTCAGTTGCCT  50

seq1  ATGGAGCCGCACCTGTGTGTGGCCAAATAGCCGAGTGTCAGTGATAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCGCACCTGTGTGTGGCCAAATAGCCGAGTGTCAGTGATAGGAC  100

seq1  AGGGCTCTCATCCAAGGCTCAGGGAGGCTCCTCTGAGGAGGGGACACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCATCCAAGGCTCAGGGAGGCTCCTCTGAGGAGGGGACACTGA  150

seq1  ACTAGACCTGAGAGAACAGTAGCAGAGGTGGCCATGAGGGAAAGTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCTGAGAGAACAGTAGCAGAGGTGGCCATGAGGGAAAGTGCTTC  200

seq1  CTGGTAATGCGGGAGCTTGTGGAGAGGCTCCCACGAAAGAAACTCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATGCGGGAGCTTGTGGAGAGGCTCCCACGAAAGAAACTCAGGCT  250

seq1  GCTGGAGAACAGAGACGCCTACGGGCAAGACCCAGGAGATGGGGGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAACAGAGACGCCTACGGGCAAGACCCAGGAGATGGGGGTGGAA  300

seq1  GATGGCTTGGGGTAGATCTTGGGGGCAGATCAGTGCTTTCTGTGAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTGGGGTAGATCTTGGGGGCAGATCAGTGCTTTCTGTGAAAAGC  350

seq1  AATGTGAAGTCATTGTAGAGCGTCATTCTGAGAAATGACATAATCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGTCATTGTAGAGCGTCATTCTGAGAAATGACATAATCTGATG  400

seq1  TCTGTTTTCAAGGGCTCCCTTCCTCGGAGAGTGGCTGGCGAATGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCAAGGGCTCCCTTCCTCGGAGAGTGGCTGGCGAATGTGCTGG  450

seq1  AAGAAGGCCACGAGGCTGGGGACACGTGTGAGGAGACTACGGAGTAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCCACGAGGCTGGGGACACGTGTGAGGAGACTACGGAGTAAGCC  500

seq1  GCAGGATGGCCGGGACAAGGTTGTCGATGTCTGAGAGAACCTAATGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGGCCGGGACAAGGTTGTCGATGTCTGAGAGAACCTAATGACAT  550

seq1  CATATGGCGTCTCTGGACTATGGGGTGGGGTGGGGGG  587
      |||||||||||||||||||||||||||||||||||||
seq2  CATATGGCGTCTCTGGACTATGGGGTGGGGTGGGGGG  587