BAC Information

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BAC

Clone NameB6Ng01-052H19
Chromosome5 (Build37)
Map Location 58,488,930 - 58,489,972
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052H19.bB6Ng01-052H19.g
ACCDH875831DH875832
length4711,037
definitionDH875831|Mus musculus domesticus DNA, BAC clone: B6Ng01-052H19, 5' end.DH875832|Mus musculus domesticus DNA, BAC clone: B6Ng01-052H19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgtttgataaagttggacatatgtgtcaatctgtaatattttcagtgctc
ttggtatagtttacacatgggcattaaattatgtaggtctcaatggaata
ttttggccatataagaaagcaccaaaagatgaattgtagtgtgttcttga
aggaataaaatgaatattaatctaatggaaaatttatatatatatatata
tatatatatatatatatatatatatatatatatatatgtgtatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatattacacatttgcttccttatttacat
atatttttttatatatatacatatatatatatacacatatgtgtacatac
atttatttatgtttatatacatttagatatatatatatatttttttattt
ctttctctctctccctatctt

gaattcttttttttaattaggtattttcttcatttacatttccaatgcta
tccccaaagtgccccatacccccacacacactcccctacccacccactcc
cacttcttggccctggcgttcccctgtactgaatcaaggaagaatgacaa
acatatgtcatagaaggcccattagctgacatacaaaatcatgcaagcaa
tgtagttttctggagagactaatgacatgtactaagagtgagaaagtagt
ttgaataattagaatgaattgaaaagccatctattgccttctttagcttg
catagaagactcgggaagtaaaaatgttcttcttctgagacagaaacagg
acaccagtcaaatgataagagatatcagtgcaaagctccacttgcagagt
gaggggcctctgagccagtgtgtgcactcggtatttctaatccttttctt
tgcttcacctttattttggcctttagggtaatagatcccatattaatata
atgtaagaaaagttcaaatttctttagtgagttatataaacatagctcat
gatctggtataaaaatgtattactttagaagtcagtaaagtaaaaaaaaa
atcttttcattgtcaatgtaaataaggaattatattttacaaaatgaaca
tgacatttctctctgtgataggaatttttgtagatattttatttaattta
taactacatgcaaatattttttgtctttgactaacaaagaattttattag
taggtataaagtttagtcaagggggagatgaaagcatcaatagtttggta
tcaaaatgaagcatgaatttaggtttatctgtaaactatgcaacacagta
ctgccttatttttctaatttgctcaattctgaaaaagttcatactaaaga
aaattttataaaatgacaaataaaatctcatcttaaattatatatgtgat
gtatatatatgcaatataatattatattgttataatgtttatatatatta
catttaaaataaaccatattcatgtttgtggtataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58488930_58489972
seq2: B6Ng01-052H19.g_69_1105

seq1  GAATTCTTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTA  50

seq1  TCCCCAAAGTGCCCCATACCCCCACACACACTCCCCTACCCACCCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAGTGCCCCATACCCCCACACACACTCCCCTACCCACCCACTCC  100

seq1  CACTTCTTGGCCCTGGCGTTCCCCTGTACTGAATCAAGGAAGAATGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTGGCCCTGGCGTTCCCCTGTACTGAATCAAGGAAGAATGACAA  150

seq1  ACATATGTCATAGAAGGCCCATTAGCTGACATACAAAATCATGCAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTCATAGAAGGCCCATTAGCTGACATACAAAATCATGCAAGCAA  200

seq1  TGTAGTTTTCTGGAGAGACTAATGACATGTACTAAGAGTGAGAAAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTCTGGAGAGACTAATGACATGTACTAAGAGTGAGAAAGTAGT  250

seq1  TTGAATAATTAGAATGAATTGAAAAGCCATCTATTGCCTTCTTTAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATTAGAATGAATTGAAAAGCCATCTATTGCCTTCTTTAGCTTG  300

seq1  CATAGAAGACTCGGGAAGTAAAAATGTTCTTCTTCTGAGACAGAAACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGACTCGGGAAGTAAAAATGTTCTTCTTCTGAGACAGAAACAGG  350

seq1  ACACCAGTCAAATGATAAGAGATATCAGTGCAAAGCTCCACTTGCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCAAATGATAAGAGATATCAGTGCAAAGCTCCACTTGCAGAGT  400

seq1  GAGGGGCCTCTGAGCCAGTGTGTGCACTCGGTATTTCTAATCCTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCCTCTGAGCCAGTGTGTGCACTCGGTATTTCTAATCCTTTTCTT  450

seq1  TGCTTCACCTTTATTTTGGCCTTTAGGGTAATAGATCCCATATTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCTTTATTTTGGCCTTTAGGGTAATAGATCCCATATTAATATA  500

seq1  ATGTAAGAAAAGTTCAAATTTCTTTAGTGAGTTATATAAACATAGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAAAAGTTCAAATTTCTTTAGTGAGTTATATAAACATAGCTCAT  550

seq1  GATCTGGTATAAAAATGTATTACTTTAGAAGTCAGTAAAGTAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGTATAAAAATGTATTACTTTAGAAGTCAGTAAAGTAAAAAAAAA  600

seq1  ATCTTTTCATTGTCAATGTAAATAAGGAATTATATTTTACAAAATGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCATTGTCAATGTAAATAAGGAATTATATTTTACAAAATGAACA  650

seq1  TGACATTTCTCTCTGTGATAGGAA-TTTTGTAGATATTTTATTTAATTTA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACATTTCTCTCTGTGATAGGAATTTTTGTAGATATTTTATTTAATTTA  700

seq1  TAACTACATGCAAATA-TTTTTGTC-TTGACTAACAAAGAATTTTATTAG  747
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TAACTACATGCAAATATTTTTTGTCTTTGACTAACAAAGAATTTTATTAG  750

seq1  TAGGTATAAAGTTTAGTCAAGGGGGAGATGAAAGCATCAATAGTTTGGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAAGTTTAGTCAAGGGGGAGATGAAAGCATCAATAGTTTGGTA  800

seq1  TCAAAATGAAGCATGAATTTAGGTTTATCTGTAAACTATGCAACACAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAAGCATGAATTTAGGTTTATCTGTAAACTATGCAACACAGTA  850

seq1  CTGCCTTATTTTTCTAATTTGCTCAAATTCTGAAAAAGTTCATACTAAAG  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCCTTATTTTTCTAATTTGCTC-AATTCTGAAAAAGTTCATACTAAAG  899

seq1  AAAATTTTTATAAAATGACAAATAAAATCTCATCTTAAAATTATATATGT  947
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAA-TTTTATAAAATGACAAATAAAATCTCATCTT-AAATTATATATGT  947

seq1  GATTGTAATATATATTGTAAATATATATATATATTGTTATATATGTTTAT  997
      || ||| ||||||||   | ||| |||| |||||||||||| ||||||||
seq2  GA-TGT-ATATATATGCAATATA-ATAT-TATATTGTTATA-ATGTTTAT  992

seq1  ATATATTACAATTTAAAATAAACCATAGTCATGTTTGTGGTATACA  1043
      ||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  ATATATTAC-ATTTAAAATAAACCATATTCATGTTTGTGGTATACA  1037


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