BAC Information

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BAC

Clone NameB6Ng01-052J06
Chromosome5 (Build37)
Map Location 86,962,022 - 86,963,146
singlet/doubletsinglet
Overlap geneTmprss11f
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik
Downstream geneTmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J06.bB6Ng01-052J06.g
ACCDH875891DH875892
length1,1071,276
definitionDH875891|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J06, 5' end.DH875892|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgctatgaggacagagtgacaagtatgtctctgctaccctct
atacaccttctgagtcatgcacacccatggggtttcctggataatgtaat
gagaagggagtgcatcaaaacagatttctaagcctttttttttttttttt
tttttttgtcatcaaattacattgggtcttgactgtagccacagaggtta
ttggtgggggaacagaaccaagatggctaacttttctccttctgtctgcc
caaccttggagaggcacacaaattgcttacatccaagctaatgggtatca
gaaagggatgtggtgttaggagattccacatctaagccaagagtacttta
cttttcagcctaactctgaatataggtcttaatttgtccttcatgtaacc
agaagaaactatttattatctttgatttatttttaatttatagtagtctt
cataatgaataaactgtaatgttataggaaagataacactagaatcacaa
ggatacaatcaagagcacagtctcttctagtatgtagaaggcacagtagg
ggcacatcagaggacaagctggtgagactgagatcaatggcaagagagga
ttagaaaacaaatgctccccagaaccctgtgaacttacttccagaagcaa
tgagctgctgtgagcagccatgtgttgctgatgagtgtggctccacactg
atggccagccccaatgagctggaggctagcctgccatggccactctcctt
ccatagctgtttccctcccttggacaatgcgttcagtagaagaggatgct
ggtaatgggatgtttgaagatgacattcttatcccacatcctggcaaaga
aacacacagtttaaagaaattctttacctcagtaactttttaacctgtct
tagtacacagtctctggatacacacacacacacacacacacacacactat
ggattggggttgattgccctgagaattcaaaagcaaaatttactttttgc
ttaggaatttagttcaaacgcaatttccggatttctgctaatctatcacc
tggcatctggccatttatattccagcaattgactgctaacaggatttgtc
agtctga
gaattcatcttggctctgagctgatggtatggccacatggcaagccagaa
agtcgcttcagaatgctgtgtctctgtgttgctggctgtcttcatgacat
tctgagcccacagaagagttctccttcaaacattttcctggaaaaaaagt
tgtttattttcttttatgtgtacaagttcagccttggaaactagtcttca
ttcacaatgatagtgactcttatctaggatatatacattcttttattttt
gtttactgttattcatttatataaaaggcagtcatatttatgtcatggct
tacatcagttctagataacatgctgtggcatactgttctttttctgaaga
aagcttctggtcgctgtcatgtcttgttcatataactgttttaaaatatc
tttcaaggaaggacagatagaagtataaagagggataggaaaaaaattga
gcaagaaggactaagttaggtcagggtaggaggatagcataaaggaagga
gaatagggaaggagagctaacataaagtcctttgaaaaagtagtatgaga
accaacttctgtagacatacaaacaatatgcactgaatagaatttaaagg
taccttataaaagtaggccaatatttctcttagacacaataagggatcag
ataaaaaagccagggtcagaaattagttatctcttttgcaattgttgatc
agtaggttactaggtgtcctcaaatactacagactcttgtcattgctctt
ggttactttctagaacttgatagtaagatcccattgatgaagatatcaca
tacttgagtcatagaacttggagaaataaatctggtactgacctaggagc
tacatctttattggcaggtttccattatgctggaaaggagaaaagtaaaa
gttgatcttacccagctgtgaagcctgtgagttatgttagtgtttggcca
gacagatatgcccttctggagcacagttgcacaacggatgagagtaccat
ccactttctgatttcatttaaggcatgatccacagttgaatacatgcctg
ccacagtataaggacaaaaatctatgcctaaaaagtcatagccctcaagg
agaactaaacctactatttcctcctaatgaccataactacctccccttct
agtgactgaatcaaggttatataagacaggtgcacttcaatctataagaa
acctcttttgtggtgatagaattaaacttctccgagtactcataggccat
actacccgagtggtaactcagtagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86962022_86963146
seq2: B6Ng01-052J06.b_40_1146

seq1  GAATTCCATGCTATGAGGACAGAGTGACAAGTATGTCTCTGCTACCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTATGAGGACAGAGTGACAAGTATGTCTCTGCTACCCTCT  50

seq1  ATACACCTTCTGAGTCATGCACACCCATGGGGTTTCCTGGATAATGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTTCTGAGTCATGCACACCCATGGGGTTTCCTGGATAATGTAAT  100

seq1  GAGAAGGGAGTGCATCAAAACAGATTTCTAAGCCTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAGTGCATCAAAACAGATTTCTAAGCCTTTTTTTTTTTTTTTT  150

seq1  TTTTTTTGTCATCAAATTACATTGGGTCTTGACTGTAGCCACAGAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTCATCAAATTACATTGGGTCTTGACTGTAGCCACAGAGGTTA  200

seq1  TTGGTGGGGGAACAGAACCAAGATGGCTAACTTTTCTCCTTCTGTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGGGAACAGAACCAAGATGGCTAACTTTTCTCCTTCTGTCTGCC  250

seq1  CAACCTTGGAGAGGCACACAAATTGCTTACATCCAAGCTAATGGGTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGGAGAGGCACACAAATTGCTTACATCCAAGCTAATGGGTATCA  300

seq1  GAGAGGGATGTGGTGTTAGGAGATTCCACATCTAAGCCAAGAGTACTTTA  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATGTGGTGTTAGGAGATTCCACATCTAAGCCAAGAGTACTTTA  350

seq1  CTTTTCAGCCTAACTCTGAATATAGGTCTTAATTTGTCCTTCATGTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGCCTAACTCTGAATATAGGTCTTAATTTGTCCTTCATGTAACC  400

seq1  AGAAGAAACTATTTATTATCTTTGATTTATTTTTAATTTATAGTAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACTATTTATTATCTTTGATTTATTTTTAATTTATAGTAGTCTT  450

seq1  CATAATGAATAAACTGTAATGTTATAGGAAAGATAACACTAGAATCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAATAAACTGTAATGTTATAGGAAAGATAACACTAGAATCACAA  500

seq1  GGATACAATCAAGAGCACAGTCTCTTCTAGTATGTAGAAGGCACAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAATCAAGAGCACAGTCTCTTCTAGTATGTAGAAGGCACAGTAGG  550

seq1  GGCACATCAGAGGACAAGCTGGTGAGACTGAGATCAATGGCAAGAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATCAGAGGACAAGCTGGTGAGACTGAGATCAATGGCAAGAGAGGA  600

seq1  TTAGAAAACAAATGCTCCCCAGAACCCTGTGAACTTACTTCCAGAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAACAAATGCTCCCCAGAACCCTGTGAACTTACTTCCAGAAGCAA  650

seq1  TGAGCTGCTGTGAGCAGCCATGTGTTGCTGATGAGTGTGGCTCCACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCTGTGAGCAGCCATGTGTTGCTGATGAGTGTGGCTCCACACTG  700

seq1  ATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATGGCCACTCTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGCCCCAATGAGCTGGAGGCTAGCCTGCCATGGCCACTCTCCTT  750

seq1  CCATAGCTGTTTCCCTCCCTTGGACAATGCGTTCAGTAGAAGAGGATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTGTTTCCCTCCCTTGGACAATGCGTTCAGTAGAAGAGGATGCT  800

seq1  GGTAATGGGATGTTTGAAGATGACATTCTTATCCCACATCCTGGCAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGGGATGTTTGAAGATGACATTCTTATCCCACATCCTGGCAAAGA  850

seq1  AACACACAGTTTAAAGAAAATTCTTTACCTCAGTAACTTTTTAACCTGTC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AACACACAGTTTAAAG-AAATTCTTTACCTCAGTAACTTTTTAACCTGT-  898

seq1  CTTAGTACACAGTCTCTGGATACACACACACACACACACACACACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTAGTACACAGTCTCTGGATACACACACACACACACACACACACACAC-  947

seq1  TATGGATT-GGGTTGATTGCCCTGAG-ATTCAAAAGCAATATTTATCTTT  998
      |||||||| ||||||||||||||||| |||||||||||| ||||| ||||
seq2  TATGGATTGGGGTTGATTGCCCTGAGAATTCAAAAGCAAAATTTA-CTTT  996

seq1  TTGCTTAGGAATTTAGTTCAGAACGCAATTTCCGGATCTCTGCCTAAATC  1048
      |||||||||||||||||||| |||||||||||||||| |||| ||||   
seq2  TTGCTTAGGAATTTAGTTCA-AACGCAATTTCCGGATTTCTG-CTAA--T  1042

seq1  CTATACAGCCTGGCATCTTGGCACATTTTAGTAATCCCAGCATTTGAGCT  1098
      |||| || |||||||||| | ||   ||||   || |||||| |||| ||
seq2  CTAT-CA-CCTGGCATCTGGCCA---TTTA--TATTCCAGCAATTGA-CT  1084

seq1  GCCTATACAGGAATTTTGTCAGTCTGA  1125
      | ||| ||||||  |||||||||||||
seq2  G-CTA-ACAGGA--TTTGTCAGTCTGA  1107