BAC Information

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BAC

Clone NameB6Ng01-052J10
Chromosome5 (Build37)12 (Build37)
Map Location 69,998,734 - 69,999,80838,276,840 - 38,277,056
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J10.bB6Ng01-052J10.g
ACCDH875897DH875898
length1,065618
definitionDH875897|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J10, 5' end.DH875898|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,998,734 - 69,999,808)(38,276,840 - 38,277,056)
sequence
gaattcaatctctccacatcgtcatcagctgtcctggtttgtataacttt
tgctgtgataaagcagtctgatcaaaaccaactcagggaggaaagggtcc
actgtcatctgtcactgagggggcgccaaggtaggaactacagcagaacc
atggaagaacactgcttaccgccttgctctctcttcattaccttttcagc
gagtttcctttaccgccagtaccacctgccagcagggccaccatctgtgg
tctgggcactctcccgtcaatccttaattgagattaatgcacagcttgtc
tgtagtccaatccgacagacatattttctcatttgaggttcccccaaccc
agaagactttatcttgaatcaatttgatcaaaactaattagcacaaccct
tgttaaattttatcaacatctctttatatttaatatttccacaaaattag
tatctttttatcaccaaaaccacgtacttgacatagtgatatttctttta
atctgaaaaatcttttggaaatgttactaattattaacatctacagccac
aattcttgggaccacattttaatgtcttgaatattatgacaacattgatc
atcccaaatttaagctttatttctgttaggtccagtttcttacttctctc
attctcaactgtatcagtatttatcaactgtatttagtttatctctgttt
tcacctttgactttgttttccacttcaaatcaaaatctaaataaaatatt
cctattctgaatatttttttcaaaattcatatcagtaagtattccatttt
tcttcctgtgaaagcattttacatctgtatctaatgtcaaacatgatggt
tcatctcttcaattatactggaaacacatggggaataaaaactacctggg
acacattttctgagttcccttttccatagttacaatgtaactagttattc
aggaagttacaaacatgtgccgttttacaatggagctggtatggatgtac
accttggtgaacagcactgactggttgatctatcactgcaggcctacgga
cagggtattcaggaa
gaattctctccagagttttttctgtcacttagagctatacatttctctcc
aaagactgcttttaatgtattctagagggttttctgcgttgtgatttcat
tttcatttagtttcagggactttttttttttaatttctttcttgccttat
tttctttgattcattgaccatgcagtaaagagttgcttaatctatgcaaa
tgtgtgtacttactagagatatgtttctgtccattttaagtatttatttc
atttttgtcagataaagatccaatgagctatttctgtttttttctttctt
tctttctttctttctttctttctttctttctttctttctttctctctctc
tctctctctctctctctctctctctctgtctctgtgtttgtaagcttgtt
acttttttactgacagaatagcttgtagtacaaacttatctagcatctag
agcctattttatacttacagaatcatgtgtttgcgtacagtttattaata
cctttttgcatcctggtatataagttgaatctcagagttacacattattg
agaaataattactctagcctatatgataaatttatttccaccaaatggca
aaaataaatgatggatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69998734_69999808
seq2: B6Ng01-052J10.b_43_1107

seq1  GAATTCAATCTCTCCACATCGTCATCAGCTGTCCTGGTTTGTATAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCTCCACATCGTCATCAGCTGTCCTGGTTTGTATAACTTT  50

seq1  TGCTGTGATAAAGCAGTCTGATCAAAACCAACTCAGGGAGGAAAGGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGATAAAGCAGTCTGATCAAAACCAACTCAGGGAGGAAAGGGTCC  100

seq1  ACTGTCATCTGTCACTGAGGGGGCGCCAAGGTAGGAACTACAGCAGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCTGTCACTGAGGGGGCGCCAAGGTAGGAACTACAGCAGAACC  150

seq1  ATGGAAGAACACTGCTTACCGCCTTGCTCTCTCTTCATTACCTTTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAACACTGCTTACCGCCTTGCTCTCTCTTCATTACCTTTTCAGC  200

seq1  GAGTTTCCTTTACCGCCAGTACCACCTGCCAGCAGGGCCACCATCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCTTTACCGCCAGTACCACCTGCCAGCAGGGCCACCATCTGTGG  250

seq1  TCTGGGCACTCTCCCGTCAATCCTTAATTGAGATTAATGCACAGCTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCACTCTCCCGTCAATCCTTAATTGAGATTAATGCACAGCTTGTC  300

seq1  TGTAGTCCAATCCGACAGACATATTTTCTCATTTGAGGTTCCCCCAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCAATCCGACAGACATATTTTCTCATTTGAGGTTCCCCCAACCC  350

seq1  AGAAGACTTTATCTTGAATCAATTTGATCAAAACTAATTAGCACAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTTTATCTTGAATCAATTTGATCAAAACTAATTAGCACAACCCT  400

seq1  TGTTAAATTTTATCAACATCTCTTTATATTTAATATTTCCACAAAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATTTTATCAACATCTCTTTATATTTAATATTTCCACAAAATTAG  450

seq1  TATCTTTTTATCACCAAAACCACGTACTTGACATAGTGATATTTCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTATCACCAAAACCACGTACTTGACATAGTGATATTTCTTTTA  500

seq1  ATCTGAAAAATCTTTTGGAAATGTTACTAATTATTAACATCTACAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAAATCTTTTGGAAATGTTACTAATTATTAACATCTACAGCCAC  550

seq1  AATTCTTGGGACCACATTTTAATGTCTTGAATATTATGACAACATTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGGACCACATTTTAATGTCTTGAATATTATGACAACATTGATC  600

seq1  ATCCCAAATTTAAGCTTTATTTCTGTTAGGTCCAGTTTCTTACTTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAATTTAAGCTTTATTTCTGTTAGGTCCAGTTTCTTACTTCTCTC  650

seq1  ATTCTCAACTGTATCAGTATTTATCAACTGTATTTAGTTTATCTCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAACTGTATCAGTATTTATCAACTGTATTTAGTTTATCTCTGTTT  700

seq1  TCACCTTTGACTTTGTTTTCCACTTCAAATCAAAATCTAAATAAAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTGACTTTGTTTTCCACTTCAAATCAAAATCTAAATAAAATATT  750

seq1  CCTATTCTGAATATTTTTTTCAAAATTCATATCAGTAAGTATTCCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTGAATATTTTTTTCAAAATTCATATCAGTAAGTATTCCATTTT  800

seq1  TCTTCCTGTGAAAGCATTTTACATCTGTATCTAAGGTCAAACATGATGGT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTCCTGTGAAAGCATTTTACATCTGTATCTAATGTCAAACATGATGGT  850

seq1  TCATCTCTTCAATTAGACTGGAAACACATGGGGAATAAAAACTACCTGGG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTCAATTATACTGGAAACACATGGGGAATAAAAACTACCTGGG  900

seq1  ACACATTTTTCTGAGTTCCCTTATCCATAGTTACAATGTAACTAGTTATT  950
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ACACA-TTTTCTGAGTTCCCTTTTCCATAGTTACAATGTAACTAGTTATT  949

seq1  CA-GAAGTTACAAACATGTG-CATTTTACAATGGAACTGGGTTATGGATG  998
      || ||||||||||||||||| | |||||||||||| ||||  ||||||||
seq2  CAGGAAGTTACAAACATGTGCCGTTTTACAATGGAGCTGG--TATGGATG  997

seq1  TACACCTTGGTGAAACAGCACTTGACTGGTTTGATTCTTATCACCTGCAG  1048
      |||||||||||| |||||||| ||||||| |||||   ||||| ||||||
seq2  TACACCTTGGTG-AACAGCAC-TGACTGG-TTGAT--CTATCA-CTGCAG  1041

seq1  GCCCTAGGGACAGTGTTATTTCAGGAA  1075
      | |||| |||||| ||   ||||||||
seq2  G-CCTACGGACAGGGT--ATTCAGGAA  1065

seq1: chr12_38276840_38277056
seq2: B6Ng01-052J10.g_469_684 (reverse)

seq1  ATATCCATCATTTATTTTTGACATTTGGTGGAAATAAATTTATCATATAG  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATCCATCATTTATTTTTGCCATTTGGTGGAAATAAATTTATCATATAG  50

seq1  GCTAGAGTAATTGTTTCACAATAATGTTATTACTCTGAGATTAAACATAT  100
      |||||||||||| |||| |||||||| | | ||||||||||| ||| |||
seq2  GCTAGAGTAATTATTTCTCAATAATG-TGTAACTCTGAGATTCAACTTAT  99

seq1  ATAAAAGGATGCAAAAAGGTATTAATAAACTGTAAGAAAACACATGATTC  150
      |||  ||||||||||||||||||||||||||||| | |||||||||||||
seq2  ATACCAGGATGCAAAAAGGTATTAATAAACTGTACGCAAACACATGATTC  149

seq1  TGTAAATATAAAATAGGCTCTAGATGCTAGATAAGTCTGTACTACAAGCT  200
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTAAGTATAAAATAGGCTCTAGATGCTAGATAAGTTTGTACTACAAGCT  199

seq1  ATTCTGTCAATAAAAAA  217
      ||||||||| |||||||
seq2  ATTCTGTCAGTAAAAAA  216