BAC Information

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BAC

Clone NameB6Ng01-052K21
Chromosome9 (Build37)5 (Build37)
Map Location 107,759,456 - 107,759,66753,071,175 - 53,072,073
singlet/doubletsingletsinglet
Overlap geneRbm6
Upstream geneVprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K21.bB6Ng01-052K21.g
ACCDH875959DH875960
length391899
definitionDH875959|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K21, 5' end.DH875960|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,759,456 - 107,759,667)(53,071,175 - 53,072,073)
sequence
actttgtggatcaggctggcctccaactcagaaatccgcctgcctctgcc
tcccaagtgctgggattaaaggtgtgcgctaccacgcccggcgagacggg
cttttcttaaaaacaatttttaaaatgtattcttagtcccagcactcagg
aagcagaggaaggcagatctctgtgagttcgaggccagcctggcctacag
agcaagtttcaggacagccagagctacacagagaaaccctgtctcaaaac
aaaacaaaacaagtatttttagactatacatacatgtatacaatgtatct
tgatcatatccgaccaaactccctttccctgactccactccagtgcttcc
tcttcccattttcacgtcctgtaaaaggtatatatgtgcat
gaattcaaggccacattggtcttcatggtaggacagccagagccacacag
agacacttgtctcaaaaacaaaacaaaaccacaaacaaaacagttacttt
ttccttaaaaggatgggtgtgtttcttaggaattcttaatagaaaccaac
aaatacaattgccttccctgagcaggtttttaagcaattttattatctgt
gagggtgagagtgggaggtaatttgtgcagagtacatggtcggaggacaa
ctttgtgcaggcaatccccctcctacctttacgttggctctggggaccaa
accgaggctaccggactatcctcagacagcacctttacccaacaagccat
ctcaccagctctaagccatttttaagttggttcctccaccccacccccca
cctgaatcccagcactctgggaggctgagaatcctacagattcaaggcca
gcttgtgcttcacactctgagaggacatgaggtaaggtaaggaagctgta
ggtcacaacgttacctttattgggcaaagtttgttagaggcatggccaaa
ggcttgcttcctctgcaagattcagaattagacagacttgcctgtgatct
gtgctgccccaggcagtctctccccttcccactggcagagcagagcagct
gccagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagaaaggcgtgggggaaggacaggaatgatg
aggggctggaacaaggtggggaagctgtgtgtgctcactaggaagtctcc
ctgtgcagttattattactcatttttcattttatttgagcctgctgtttg
tctccaacatcagcaccaccgagtcaacatcttattaaatacaggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107759456_107759667
seq2: B6Ng01-052K21.b_158_309

seq1  TAAAAACAATTTTTAAGTCAACTGTTAACAATAAGAAAATAAAATTTTAA  50
      |||||||||||||                          ||||||     
seq2  TAAAAACAATTTT--------------------------TAAAAT-----  19

seq1  GTAAGTTTAATGGTTCTGGCCGGGAGGTAGTGGAGCATGCCTTTAATCCC  100
      |||          |||                          ||| ||||
seq2  GTA----------TTC--------------------------TTAGTCCC  33

seq1  AGCACTTGGGAGGCAGAGGCAGGTGGAT---------TTCGAGGCCAGCC  141
      ||||||  ||| ||||||| |||  |||         |||||||||||||
seq2  AGCACTCAGGAAGCAGAGGAAGGCAGATCTCTGTGAGTTCGAGGCCAGCC  83

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAATCCCT  191
      ||| ||||||||  |||| |||||||||||||||||||||||||| ||||
seq2  TGGCCTACAGAGCAAGTTTCAGGACAGCCAGAGCTACACAGAGAAACCCT  133

seq1  GTCTCGAAAAACAAAAAAAAA  212
      |||||  ||||||||| ||||
seq2  GTCTC--AAAACAAAACAAAA  152

seq1: chr5_53071175_53072073
seq2: B6Ng01-052K21.g_68_965

seq1  GAATTCAAGGCCACATTGGTCTTCATGGTAGGACAGCCAGAGCCACACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCACATTGGTCTTCATGGTAGGACAGCCAGAGCCACACAG  50

seq1  AGACACTTGTCTCAAAAACAAAACAAAACCACAAACAAAACAGTTACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTGTCTCAAAAACAAAACAAAACCACAAACAAAACAGTTACTTT  100

seq1  TTCCTTAAAAGGATGGGTGTGTTTCTTAGGAATTCTTAATAGAAACCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAAGGATGGGTGTGTTTCTTAGGAATTCTTAATAGAAACCAAC  150

seq1  AAATACAATTGCCTTCCCTGAGCAGGTTTTTAAGCAATTTTATTATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATTGCCTTCCCTGAGCAGGTTTTTAAGCAATTTTATTATCTGT  200

seq1  GAGGGTGAGAGTGGGAGGTAATTTGTGCAGAGTACATGGTCGGAGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAGAGTGGGAGGTAATTTGTGCAGAGTACATGGTCGGAGGACAA  250

seq1  CTTTGTGCAGGCAATCCCCCTCCTACCTTTACGTTGGCTCTGGGGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCAGGCAATCCCCCTCCTACCTTTACGTTGGCTCTGGGGACCAA  300

seq1  ACCGAGGCTACCGGACTATCCTCAGACAGCACCTTTACCCAACAAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGCTACCGGACTATCCTCAGACAGCACCTTTACCCAACAAGCCAT  350

seq1  CTCACCAGCTCTAAGCCATTTTTAAGTTGGTTCCTCCACCCCACCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCTCTAAGCCATTTTTAAGTTGGTTCCTCCACCCCACCCCCCA  400

seq1  CCTGAATCCCAGCACTCTGGGAGGCTGAGAATCCTACAGATTCAAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCCCAGCACTCTGGGAGGCTGAGAATCCTACAGATTCAAGGCCA  450

seq1  GCTTGTGCTTCACACTCTGAGAGGACATGAGGTAAGGTAAGGAAGCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTTCACACTCTGAGAGGACATGAGGTAAGGTAAGGAAGCTGTA  500

seq1  GGTCACAACGTTACCTTTATTGGGCAAAGTTTGTTAGAGGCATGGCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAACGTTACCTTTATTGGGCAAAGTTTGTTAGAGGCATGGCCAAA  550

seq1  GGCTTGCTTCCTCTGCAAGATTCAGAATTAGACAGACTTGCCTGTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTTCCTCTGCAAGATTCAGAATTAGACAGACTTGCCTGTGATCT  600

seq1  GTGCTGCCCCAGGCAGTCTCTCCCCTTCCCACTGGCAGAGCAGAGCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCCCAGGCAGTCTCTCCCCTTCCCACTGGCAGAGCAGAGCAGCT  650

seq1  GCC----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  696
      |||    |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  700

seq1  GAGAGAGAGAGAGAGAGAGAGAAAGGCGT-GGGGAAGGACAGGAATGAGT  745
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GAGAGAGAGAGAGAGAGAGAGAAAGGCGTGGGGGAAGGACAGGAATGA-T  749

seq1  GAGGGGCTGGAACAAGGTGGGGAAGCTGTGTGTGCTTACTAGGAAGTACT  795
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GAGGGGCTGGAACAAGGTGGGGAAGCTGTGTGTGCTCACTAGGAAGT-CT  798

seq1  CCCTGTGCAGCTCAGCAGTACCCAGTGCTCAGCACACATGAGCCTGCAGT  845
      |||||||||| | |  | ||| || |  |||    |  ||||||||| ||
seq2  CCCTGTGCAG-TTATTATTACTCATTTTTCATTTTATTTGAGCCTGCTGT  847

seq1  TTGATCTCCAACATCAGCACCACCGAGATCAACAACTAAGTAAAGTACAG  895
      ||| ||||||||||||||||||||||| |||||| || | |||| |||||
seq2  TTG-TCTCCAACATCAGCACCACCGAG-TCAACATCTTATTAAA-TACAG  894

seq1  GATT  899
      ||||
seq2  GATT  898