BAC Information

Click to search

BAC

Clone NameB6Ng01-052N12
Chromosome5 (Build37)
Map Location 128,609,668 - 128,610,830
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N12.bB6Ng01-052N12.g
ACCDH876072DH876073
length1,152854
definitionDH876072|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N12, 5' end.DH876073|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgtgccttttagtgttgtatgttggggatgcaagaattgata
aataccatgttggacacctccaggttaaggatgactcggctttaaggtgt
ttaccattttggaggcacagcagaaaccccattccagaaagggtccttat
ccgctgtaggcgtgggttggggaggaaacctctagagatgccaggctgta
agtggaagctgggaatgtgtgggccctttgtaaatcactatctagtcccc
agatgaaattgtgacttccggagcatcatacccgggtgtcccaatcctat
ctgctcagaagcatgtacatacctttgtgaaagggacatttttagacaga
tcatcacgctctgttcccatcatgccctgttcccatcctagcccatcagt
tttatactaaaagtctttagggtatgcttagctatttcttttgtgccatt
ttagggtggagagggtgggcatgatggagccagtcattcaggacttatta
cttcctgtgttgtggtgtgcttttctttctgtcttctacctttatacaca
cacacacacacacacacacacacacacacacacacacacacatttatata
ttcctttgtttttaccattgcaccagagtatgaaatagcttctgggttct
cctgctctgagctgggcaggtgattgtggccacaccctaacaacatgaag
gatcttaactgactccccttataccactctatagtttagcagtttaatgg
gttccttatagactcttccgttttgtgtggaattagcttctccccttcaa
atgatgtaattaatttaacatcacttaaaacaaaatgaggaaatattgaa
actccaaaaaaaatcagttctctctggtcttccccactctctggctctta
aattacccccccccacacacatacatacaccctttctggttgccaagcat
tttgtggggaagaatgtgatacagatctccccatttgtgggtgaacatcc
cactgataaacaccctgcattttgtccagttgtgaatttctcccttagcc
acctcccctttacaagaaacttccctgacagggactgaagctcccctaat
tcagaagtagagaatgatttaaggtcatttgatactttgtcatttatcga
at

gaattcttaggtgatggaaggtgcctctctgaagactggagtacagtggg
tgtcccagcagccattttgtgcattgtcgcgtgagatgggtgccattttt
gtagattataaggcacagagagggagggagataagaaaggagagagttta
ggaaaggagaagaaaggtaggcgggagaaagatggaggaaagggaagagg
gaggggcctgtggagatggctcagttagtcaagcatttgctacccaagct
tgaagaggagagttgggatcccagctcccgtgtaagtgttaggtaggctt
ggaggtctgtttgcaagtctgttgcccagaaagctgacacatccagtccc
cagaacaagtgtaatagctagattaaccataccagccaattctgggtttc
actgagagaccttgcctcgatgaccatggtggaaagtgattgaggagact
cttatgctaacctcaggtctttgtgtactctacatgttcccccatacatg
caaccacatatacagacacacaccatacagacagacacacaaacacatgc
aaaaggaaaaaagagaaagagaaagcgagtgtggtggttagctttcatta
aattgacaccatggggagagggaatctcaactgaggaatgcctccatcat
attggccctgggacaagcatttttgtgattaatgattgatgtgggagggg
ccagcccactgtgtgtagagatgtcctgggctagtggtagctctgaatga
tataaaaaatcagctgatcaagttagagagacatagtatgatggaatatt
gccaattggcctctgcttcagatcctgttccaggtatcctctcctgacct
tccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128609668_128610830
seq2: B6Ng01-052N12.b_43_1194

seq1  GAATTCAGTGTGCCTTTTAGTGTTGTATGTTGGGGATGCAAGAATTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGCCTTTTAGTGTTGTATGTTGGGGATGCAAGAATTGATA  50

seq1  AATACCATGTTGGACACCTCCAGGTTAAGGATGACTCGGCTTTAAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATGTTGGACACCTCCAGGTTAAGGATGACTCGGCTTTAAGGTGT  100

seq1  TTACCATTTTGGAGGCACAGCAGAAACCCCATTCCAGAAAGGGTCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTTTGGAGGCACAGCAGAAACCCCATTCCAGAAAGGGTCCTTAT  150

seq1  CCGCTGTAGGCGTGGGTTGGGGAGGAAACCTCTAGAGATGCCAGGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTAGGCGTGGGTTGGGGAGGAAACCTCTAGAGATGCCAGGCTGTA  200

seq1  AGTGGAAGCTGGGAATGTGTGGGCCCTTTGTAAATCACTATCTAGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGCTGGGAATGTGTGGGCCCTTTGTAAATCACTATCTAGTCCCC  250

seq1  AGATGAAATTGTGACTTCCGGAGCATCATACCCGGGTGTCCCAATCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATTGTGACTTCCGGAGCATCATACCCGGGTGTCCCAATCCTAT  300

seq1  CTGCTCAGAAGCATGTACATACCTTTGTGAAAGGGACATTTTTAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGAAGCATGTACATACCTTTGTGAAAGGGACATTTTTAGACAGA  350

seq1  TCATCACGCTCTGTTCCCATCATGCCCTGTTCCCATCCTAGCCCATCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACGCTCTGTTCCCATCATGCCCTGTTCCCATCCTAGCCCATCAGT  400

seq1  TTTATACTAAAAGTCTTTAGGGTATGCTTAGCTATTTCTTTTGTGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTAAAAGTCTTTAGGGTATGCTTAGCTATTTCTTTTGTGCCATT  450

seq1  TTAGGGTGGAGAGGGTGGGCATGATGGAGCCAGTCATTCAGGACTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGGAGAGGGTGGGCATGATGGAGCCAGTCATTCAGGACTTATTA  500

seq1  CTTCCTGTGTTGTGGTGTGCTTTTCTTTCTGTCTTCTACCTTTATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGTTGTGGTGTGCTTTTCTTTCTGTCTTCTACCTTTATACACA  550

seq1  CACACACACACACACACACACACACACACACACACACACACATTTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACATTTATATA  600

seq1  TTCCTTTGTTTTTACCATTGCACCAGAGTATGAAATAGCTTCTGGGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTTTTTACCATTGCACCAGAGTATGAAATAGCTTCTGGGTTCT  650

seq1  CCTGCTCTGAGCTGGGCAGGTGATTGTGGCCACACCCTAACAACATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGAGCTGGGCAGGTGATTGTGGCCACACCCTAACAACATGAAG  700

seq1  GATCTTAACTGACTCCCCTTATACCACTCTATAGTTTAGCAGTTTAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACTGACTCCCCTTATACCACTCTATAGTTTAGCAGTTTAATGG  750

seq1  GTTCCTTATAGACTCTTCCGTTTTGTGTGGAATTAGCTTCTCCCCTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTATAGACTCTTCCGTTTTGTGTGGAATTAGCTTCTCCCCTTCAA  800

seq1  ATGATGTAATTAATTTAACATCACTTAAAACAAAATGAGGAAAATATTGA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGATGTAATTAATTTAACATCACTTAAAACAAAATGAGG-AAATATTGA  849

seq1  AACTCCAAAAAAAATCAGGTTCTCTCTGGTCTTCCCCACTCTCTGGCTCT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACTCCAAAAAAAATCA-GTTCTCTCTGGTCTTCCCCACTCTCTGGCTCT  898

seq1  TAAATTACCCCCCCCCACACACATACATACACCCTTCCTGGTTGCCAAGC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAATTACCCCCCCCCACACACATACATACACCCTTTCTGGTTGCCAAGC  948

seq1  ATTTTGTGGGGAAGAGTGTGATACAGATCT-CCCATTTGTGGGTGAACAT  999
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  ATTTTGTGGGGAAGAATGTGATACAGATCTCCCCATTTGTGGGTGAACAT  998

seq1  CCCACTGATACACACTCTGCATTTTGACCAGTTGTGAATTTCTCCATTAG  1049
      |||||||||| |||| |||||||||| |||||||||||||||||| ||||
seq2  CCCACTGATAAACACCCTGCATTTTGTCCAGTTGTGAATTTCTCCCTTAG  1048

seq1  CCACCTCCCACTATACAAGAGACTTCTCTGACAGGGGACTGAGAGCTCCA  1099
      ||||||||| || ||||||| ||||| |||||| |||||||| |||||| 
seq2  CCACCTCCC-CTTTACAAGAAACTTCCCTGACA-GGGACTGA-AGCTCCC  1095

seq1  CTAATCCAGAAGTAGAAGATATGAATTTAGAGGGTCATTTGATACTTTGT  1149
      ||||| ||||||||| ||| |||| ||   | ||||||||||||||||| 
seq2  CTAATTCAGAAGTAG-AGA-ATGATTT---AAGGTCATTTGATACTTTG-  1139

seq1  TCATTTATCAGAAT  1163
      ||||||||| ||||
seq2  TCATTTATC-GAAT  1152


| Home | SequenceCutter | Blast | Download |