BAC Information

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BAC

Clone NameB6Ng01-053D10
Chromosome2 (Build37)5 (Build37)
Map Location 39,922,174 - 39,923,3748,738,066 - 8,738,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D10.bB6Ng01-053D10.g
ACCDH876328DH876329
length1,1471,166
definitionDH876328|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D10, 5' end.DH876329|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,922,174 - 39,923,374)(8,738,066 - 8,738,581)
sequence
gaattctaagtgggtacccaaatctgtttgataaacccgtgctctcaatt
tcatctacactttaaaaatttgtttttgtatctcaagcttcagtctggtc
tttaaggcataagggctgtgctagtttctatttctacttttgcttgtgtt
tttcctttttatatgtggaatgtcaatgtgattagtttctacgtattttt
aaggctataattttatgaacatttcatcactcagaaggatggctgacaca
ctagaactatctgattcagatactatagtgttaacttagttacctgcatt
ttaaactagttacatggagacagaaccctgagcatacaaactaccatcat
ataacatgtcatatctcataatacgtaattctaaatatttcagttaatga
attgggcaatgcattgattaatttttaagacagtctcactatgcaatgtc
atctggcctcaaagtcactttcctcatatctcagcttcccaagggctagg
attacgggtatctatctaccacttaagttagacacagaatattttactct
tctgaatataattttctagtttccaggtcatatggactagaagcttacct
ctgtaggacccagtaaaatagtgttaagacaagaaaagcaaataaataaa
aagaatccattccaaagtgaggaaaagcttcagaaatttacaaaaggaac
actaggacaaaaaggaaaacaaagatacacaatggtaatgggagaagaaa
agaaagtcagaaaaacatcagctactcagctctccagtgcaagcaggagc
agaaactgcattgaaattataatcctaaaaaataacaaaaggcaaacaat
cagcattagtaaagagagcatctgtactactaagcagaagacacagttcc
tgtaaaacatcaaattcagttttgggaatcactgagacaatgattctggg
gcatgtgttggtagtggaaagtccccagtctaaaagctacagctgtacac
catctttacagcaaacttcattctttaaacttggttacccagggccatga
catagaaaacattcaaaagtgaaggtgtctgattccactgctttagcctc
cgactagctcgaaaagaagatagagagaaagtagagaagagagagag
gaattctcccccgaggaatactgaaaggctgagaaacacctggaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctta
gaaaattggacatagtactactggaagatccagcaatacctctcctgggc
atatatccagaagatttctcaaccggtaaaaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaattcacgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaacccagaaac
ttagtatagcgagatataaggtacaatatgtaaaacatatgaaactgaag
aagaacgaagaccaaagtgtggacactttgctcattcttagaattggaaa
caatcacccatggaaggagttacagagacaaatttggagctgagacaaaa
ggatggtccatctagagactgccatatccagggatccatcccataattag
cctccaagcgatgacaccattgcatacactagcaagcctttattgcaagg
aaagtgatatagctgtcccttgtgagactaggccggggcctagcaaacac
agaagtggatgctcactgtcaactatggatggatcacaggtcccctgtgg
aggagctagagaaagtatccaaagagctaagagatctgcaaccctatagg
tggaacacattatgaactaatcattacctcagagctcttggactctagcc
tgcatatgtgtcaaaagaatgacctaatcgcctccctggaaagaatgccc
attatcgggcatagtttaatgccatacagggaatgccgtgccaatatatg
gataatggttgtgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_39922174_39923374
seq2: B6Ng01-053D10.b_44_1190

seq1  GAATTCTAAGTGGGTACCCAAATCTGTTTGATAAACCCGTGCTCTCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGGGTACCCAAATCTGTTTGATAAACCCGTGCTCTCAATT  50

seq1  TCATCTACACTTTAAAAATTTGTTTTTGTATCTCAAGCTTCAGTCTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACACTTTAAAAATTTGTTTTTGTATCTCAAGCTTCAGTCTGGTC  100

seq1  TTTAAGGCATAAGGGCTGTGCTAGTTTCTATTTCTACTTTTGCTTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCATAAGGGCTGTGCTAGTTTCTATTTCTACTTTTGCTTGTGTT  150

seq1  TTTCCTTTTTATATGTGGAATGTCAATGTGATTAGTTTCTACGTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTATATGTGGAATGTCAATGTGATTAGTTTCTACGTATTTTT  200

seq1  AAGGCTATAATTTTATGAACATTTCATCACTCAGAAGGATGGCTGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATAATTTTATGAACATTTCATCACTCAGAAGGATGGCTGACACA  250

seq1  CTAGAACTATCTGATTCAGATACTATAGTGTTAACTTAGTTACCTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTATCTGATTCAGATACTATAGTGTTAACTTAGTTACCTGCATT  300

seq1  TTAAACTAGTTACATGGAGACAGAACCCTGAGCATACAAACTACCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAGTTACATGGAGACAGAACCCTGAGCATACAAACTACCATCAT  350

seq1  ATAACATGTCATATCTCATAATACGTAATTCTAAATATTTCAGTTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGTCATATCTCATAATACGTAATTCTAAATATTTCAGTTAATGA  400

seq1  ATTGGGCAATGCATTGATTAATTTTTAAGACAGTCTCACTATGCAATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAATGCATTGATTAATTTTTAAGACAGTCTCACTATGCAATGTC  450

seq1  ATCTGGCCTCAAAGTCACTTTCCTCATATCTCAGCTTCCCAAGGGCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTCAAAGTCACTTTCCTCATATCTCAGCTTCCCAAGGGCTAGG  500

seq1  ATTACGGGTATCTATCTACCACTTAAGTTAGACACAGAATATTTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGGGTATCTATCTACCACTTAAGTTAGACACAGAATATTTTACTCT  550

seq1  TCTGAATATAATTTTCTAGTTTCCAGGTCATATGGACTAGAAGCTTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATAATTTTCTAGTTTCCAGGTCATATGGACTAGAAGCTTACCT  600

seq1  CTGTAGGACCCAGTAAAATAGTGTTAAGACAAGAAAAGCAAATAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACCCAGTAAAATAGTGTTAAGACAAGAAAAGCAAATAAATAAA  650

seq1  AAGAATCCATTCCAAAGTGAGGAAAAGCTTCAGAAATTTACAAAAGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCATTCCAAAGTGAGGAAAAGCTTCAGAAATTTACAAAAGGAAC  700

seq1  ACTAGGACAAAAAGGAAAACAAAGATACACAATGGTAATGGGAGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGACAAAAAGGAAAACAAAGATACACAATGGTAATGGGAGAAGAAA  750

seq1  AGAAAGTCAGAAAAACATCAGCTACTCAGCTCTCCAGTGCAAGCAGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCAGAAAAACATCAGCTACTCAGCTCTCCAGTGCAAGCAGGAGC  800

seq1  AGAAACTGCATTGAAATTATAATCCTAAAAAATAACAAAAGGCAAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCATTGAAATTATAATCCTAAAAAATAACAAAAGGCAAACAAT  850

seq1  CAGCATTAGTAAAGAGAGCATCTGTACTACTAAGCAGAAGACACAGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGTAAAGAGAGCATCTGTACTACTAAGCAGAAGACACAGTTCC  900

seq1  TGTAAAACATCAAATTCAGTTTTGGGAATCACTGAGACAATGATTCTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACATCAAATTCAGTTTTGGGAATCACTGAGACAATGATTCTGGG  950

seq1  GCATGTGTTGGTAGTGGAAAGTCCCCCAGTCTAAAAGCTACAGCTGTACA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCATGTGTTGGTAGTGGAAAGT-CCCCAGTCTAAAAGCTACAGCTGTACA  999

seq1  CCATCTTTACAGCAAAC-TCA-TCTTTAAAAACTTGGTTACCCAGGGCCA  1048
      ||||||||||||||||| ||| |||||  |||||||||||||||||||||
seq2  CCATCTTTACAGCAAACTTCATTCTTT--AAACTTGGTTACCCAGGGCCA  1047

seq1  TGACATTAGAAAACAATCAAAAGTGAAGTGGTCTGAATTCAACCTGCTTT  1098
      ||||| ||||||||| ||||||||||||  |||||| | ||  |||||||
seq2  TGACA-TAGAAAACATTCAAAAGTGAAGGTGTCTGATTCCA--CTGCTTT  1094

seq1  AGCTCCAGACTAGCATCAGGAGAGAGAGAGAGAGAGAG-AGAGAGAGAGA  1147
      |||  | |||||||   |  ||| ||| ||||||| || ||||| |||||
seq2  AGCCTCCGACTAGCTCGAAAAGA-AGATAGAGAGAAAGTAGAGA-AGAGA  1142

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAG  1197
      |||||                                             
seq2  GAGAG---------------------------------------------  1147

seq1  AGAG  1201
          
seq2  ----  1147

seq1: chr5_8738066_8738581
seq2: B6Ng01-053D10.g_941_1233 (reverse)

seq1  CTACACAACCATTATCTCTTTCGAATGAAGTCCAGAGATGTGAAATGAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAATATAACGGGAGCTCACTTTTCACACCTGGTGCTAAAGGTTACCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AATCCACCGTTTTCTTTCTTTTTTTTTTTAATTATTTTTTATTAGGTATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTCATTTACGTTTCCAATGCTCTCCCAAAAGTCCCCCATACCCTCCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCACTCCCCTACCCACCCACT-CCCACTTTTTGGCCCTGGCATTCCC  249
                 |||| || ||| |  |||  | ||||| | |||||||||
seq2  -----------CTACACAACCATTATCCATATATTGGCAC-GGCATTCCC  38

seq1  ATGTACTGAGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAG  299
       ||||    ||||| |||| | |||  |   ||||||| | |||||||||
seq2  -TGTA---TGGCAT-TAAACTATGCCCG-ATAATGGGCAT-TCTTTCCAG  81

seq1  TGATGGCCGACTAGGCCA-TCTTTTGATACATATGCA-GCTAGAGT-CAA  346
       ||  | ||| |||| || |||||||| ||||||||| |||||||| |||
seq2  GGA--GGCGATTAGGTCATTCTTTTGACACATATGCAGGCTAGAGTCCAA  129

seq1  GAGCTCCGGTGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGT  396
      |||||| |   |||| || ||||||||||||| |||||||||||||||||
seq2  GAGCTCTG--AGGTAATGATTAGTTCATAATG-TGTTCCACCTATAGGGT  176

seq1  TGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGG  446
      |||||||| | ||||||| |||| ||||||||||||||||||||   |||
seq2  TGCAGATCTC-TTAGCTCTTTGGATACTTTCTCTAGCTCCTCCA-CAGGG  224

seq1  GCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTG  496
      | |||||||||||||| |||| |||| |||||||||||||||||||||||
seq2  GACCTGTGATCCATCC-ATAGTTGACAGTGAGCATCCACTTCTGTGTTTG  273

seq1  TTAGGCCCCGGCGTAGTCTC  516
       ||||||||||| |||||||
seq2  CTAGGCCCCGGCCTAGTCTC  293