BAC Information

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BAC

Clone NameB6Ng01-053E18
Chromosome5 (Build37)
Map Location 6,167,963 - 6,294,999
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053E18.bB6Ng01-053E18.g
ACCDH876386DH876387
length9231,028
definitionDH876386|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E18, 5' end.DH876387|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,294,069 - 6,294,999)(6,167,963 - 6,168,990)
sequence
gaattctggaagttactattatggcatgttatagaattgatgctacgagg
tgatatgctggtcaaagaatgatatcctggagcagtgtttcacagagaag
tgtctatgacgtacggacctagcagacacaactaccagagtaatggaggg
ggaactggttttgtctgcttttttttttttttttttttttttttttttta
atgcttgatggaacttgggtatatttacccccttccaaggacaagaatct
tggaagtatctgaaatttaaacttagaaatgggcatcagctttccagaca
gacaaggaggccacaaaagctttcacttagattaataggacaaaaaacaa
gatgggggggaaacagtaagcaggggataaatgttggtttcataattcat
tctctcaaacaaccctctggggataacccatagcaaattaggaagaattt
gaagctgatcacttctgacagccattgcagtgggtttcatgctaccataa
ttggtccttaatacagtttggtatgtatgtgaaaaacagaggaagttgcc
tgttgtgtgtgatccagcagattcaggatgaaaacaagtctgtcaaagag
agcctttcttgttaaacagtgaggaagatgctttgatgcattctagtttg
aacagtacttttactgatacgattaatcttacgcttattatttcaagaaa
tagacagctataggctcacaagtatatacactaaaaaaaaatgttataaa
tcaaagctctgaagttttaccaatgcctttgtgtatcaaactgcaaggta
ctgacagagaaaagtttttaaatcagaaaacaagaaaataattgtttgtg
tgccaaagaacatgaaatcagtattctgacaagacgagcaagtcatcagt
atgatggagatgggaaatgattc

gaattcttttcatagagaatcaaccaagagtttatataaagttttcatta
gagcatttgctctttcctaacaattcacttaaatgctaagaaatgtttat
catccaggaaaactgtgaattccaatcacatcatgctaatttcgcttcct
ttacacacttgctcacatttgatttcaagtgaagcagatggttgtgttct
attttgctttccaactgtcagtcgaggtaattgaagtgaaaagaaactgt
ttgtcctggcagctctggaaggaccatgagcatctaatgggatgaaaaca
ttagctaccaagtccaggcctgaagcacctttatctcacctgtaatcaga
cccagctaagaatccaccatccagagataatgattttccatcactgttag
tctggttggagtccaaattgctttcctgaaagagacattactgcaaatta
tgtatggtctttccattgctccctctcctcctggtcaggtagttttcatg
ccattctggatttgtaggctgcagagtctgtctctaggagtttcctaagt
aaatagttgtgctttccattaagaacatcttttattgatgcatctaacat
gttttattcccatccatttgagctttagcttttaagagtaataaagaaat
ttttacttgcaggacttaatagggttcaatatttgctcatttggaagtta
cattattctactgtatttttattaccgtagaaccatttattttattttca
tgtcttgtgtgtgctaggcatgtgtgcatatgtgtcacttatgcacacat
gtgcaaagaggccctgaaactgacgttagatgttttcctggatccatctc
cactttgtttactaggcaaggccttttcattgacccagaactctttcata
gtctaatctagactgactgattactaattggttctcctgagtatgccttc
tcaggaattacagacagccaccatcctagcctagctttttttgggttcta
ctttgatgaacagtgcctctcaagttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6294069_6294999
seq2: B6Ng01-053E18.b_49_971 (reverse)

seq1  GAATCCTTTTCCCCTTCTCCATCATTCCCTGATGACTTGCTCCGTCTTTG  50
      ||||| |||  ||| ||||||||||   ||||||||||||| ||||||  
seq2  GAATCATTT--CCCATCTCCATCAT--ACTGATGACTTGCT-CGTCTT--  43

seq1  TTCAGAATACTGATTTCATGTTCTTTGGCACACAAACAATTATTTTCTTT  100
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCAGAATACTGATTTCATGTTCTTTGGCACACAAACAATTATTTTC-TT  92

seq1  GTTTTCTGATTTAAAAACTTTTCTCTGTCAGTACCTTGCAGTTTGATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGATTTAAAAACTTTTCTCTGTCAGTACCTTGCAGTTTGATACA  142

seq1  CAAAGGCATTGGTAAAACTTCAGAGCTTTGATTTATAACATTTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCATTGGTAAAACTTCAGAGCTTTGATTTATAACATTTTTTTTTA  192

seq1  GTGTATATACTTGTGAGCCTATAGCTGTCTATTTCTTGAAATAATAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATACTTGTGAGCCTATAGCTGTCTATTTCTTGAAATAATAAGCG  242

seq1  TAAGATTAATCGTATCAGTAAAAGTACTGTTCAAACTAGAATGCATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAATCGTATCAGTAAAAGTACTGTTCAAACTAGAATGCATCAAA  292

seq1  GCATCTTCCTCACTGTTTAACAAGAAAGGCTCTCTTTGACAGACTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCCTCACTGTTTAACAAGAAAGGCTCTCTTTGACAGACTTGTTT  342

seq1  TCATCCTGAATCTGCTGGATCACACACAACAGGCAACTTCCTCTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGAATCTGCTGGATCACACACAACAGGCAACTTCCTCTGTTTTT  392

seq1  CACATACATACCAAACTGTATTAAGGACCAATTATGGTAGCATGAAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACCAAACTGTATTAAGGACCAATTATGGTAGCATGAAACCC  442

seq1  ACTGCAATGGCTGTCAGAAGTGATCAGCTTCAAATTCTTCCTAATTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATGGCTGTCAGAAGTGATCAGCTTCAAATTCTTCCTAATTTGCT  492

seq1  ATGGGTTATCCCCAGAGGGTTGTCTGAGAGAATGAATTATGAAACCAACA  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGGGTTATCCCCAGAGGGTTGTTTGAGAGAATGAATTATGAAACCAACA  542

seq1  TTTATCCCCTGCTTACTGTTTCCCCCCCATCTTGTTTTTTGTCCTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCCTGCTTACTGTTTCCCCCCCATCTTGTTTTTTGTCCTATTAA  592

seq1  TCTAAGTGAAAGCTTTTGTGGCCTCCTTGTCTGTCTGGAAAGCTGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGAAAGCTTTTGTGGCCTCCTTGTCTGTCTGGAAAGCTGATGCC  642

seq1  CATTTCTAAGTTTAAATTTCAGATACTTCCAAGATTCTTGTCCTTGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAAGTTTAAATTTCAGATACTTCCAAGATTCTTGTCCTTGGAAG  692

seq1  TGGGTAAATATACCCAAGTTCCATCAAGCATTAAAAAAAAAAAAAAAAAA  750
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAATATACCCAAGTTCCATCAAGCATTAAAAAAAAAAAAAAAAAA  742

seq1  AAAAAAAAAAAAAGCAGACAAAACCAGTTCCCCCTCCATTACTCTGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGCAGACAAAACCAGTTCCCCCTCCATTACTCTGGTAG  792

seq1  TTGTGTCTGCTAGGTCCGTACGTCATAGACACTTCTCTGTGAAACACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGCTAGGTCCGTACGTCATAGACACTTCTCTGTGAAACACTGC  842

seq1  TCCAGGATATCATTCTTTGACCAGCATATCACCTCGTAGCATCAATTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATATCATTCTTTGACCAGCATATCACCTCGTAGCATCAATTCTA  892

seq1  TAACATGCCATAATAGTAACTTCCAGAATTC  931
      |||||||||||||||||||||||||||||||
seq2  TAACATGCCATAATAGTAACTTCCAGAATTC  923


seq1: chr5_6167963_6168990
seq2: B6Ng01-053E18.g_71_1097

seq1  GAATTCTTTTCATAGAGAATCAACCAAGAGTTTATATAAAGTTTTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATAGAGAATCAACCAAGAGTTTATATAAAGTTTTCATTA  50

seq1  GAGCATTTGCTCTTTCCTAACAATTCACTTAAATGCTAAGAAATGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGCTCTTTCCTAACAATTCACTTAAATGCTAAGAAATGTTTAT  100

seq1  CATCCAGGAAAACTGTGAATTCCAATCACATCATGCTAATTTCGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGAAAACTGTGAATTCCAATCACATCATGCTAATTTCGCTTCCT  150

seq1  TTACACACTTGCTCACATTTGATTTCAAGTGAAGCAGATGGTTGTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTTGCTCACATTTGATTTCAAGTGAAGCAGATGGTTGTGTTCT  200

seq1  ATTTTGCTTTCCAACTGTCAGTCGAGGTAATTGAAGTGAAAAGAAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTCCAACTGTCAGTCGAGGTAATTGAAGTGAAAAGAAACTGT  250

seq1  TTGTCCTGGCAGCTCTGGAAGGACCATGAGCATCTAATGGGATGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGCAGCTCTGGAAGGACCATGAGCATCTAATGGGATGAAAACA  300

seq1  TTAGCTACCAAGTCCAGGCCTGAAGCACCTTTATCTCACCTGTAATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACCAAGTCCAGGCCTGAAGCACCTTTATCTCACCTGTAATCAGA  350

seq1  CCCAGCTAAGAATCCACCATCCAGAGATAATGATTTTCCATCACTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAAGAATCCACCATCCAGAGATAATGATTTTCCATCACTGTTAG  400

seq1  TCTGGTTGGAGTCCAAATTGCTTTCCTGAAAGAGACATTACTGCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGGAGTCCAAATTGCTTTCCTGAAAGAGACATTACTGCAAATTA  450

seq1  TGTATGGTCTTTCCATTGCTCCCTCTCCTCCTGGTCAGGTAGTTTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCTTTCCATTGCTCCCTCTCCTCCTGGTCAGGTAGTTTTCATG  500

seq1  CCATTCTGGATTTGTAGGCTGCAGAGTCTGTCTCTAGGAGTTTCCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGGATTTGTAGGCTGCAGAGTCTGTCTCTAGGAGTTTCCTAAGT  550

seq1  AAATAGTTGTGCTTTCCATTAAGAACATCTTTTATTGATGCATCTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGTGCTTTCCATTAAGAACATCTTTTATTGATGCATCTAACAT  600

seq1  GTTTTATTCCCATCCATTTGAGCTTTAGCTTTTAAGAGTAATAAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCCCATCCATTTGAGCTTTAGCTTTTAAGAGTAATAAAGAAAT  650

seq1  TTTTACTTGCAGGACTTAATAGGGTTCAATATTTGCTCATTTGGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGCAGGACTTAATAGGGTTCAATATTTGCTCATTTGGAAGTTA  700

seq1  CATTATTCTACTGTATTTTTATTACCGTAGAACCATTTATTTTATTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTACTGTATTTTTATTACCGTAGAACCATTTATTTTATTTTCA  750

seq1  TGTCTTGTGTGTGCTAGGCATGTGTGCATATGTGTTCACTTATGCACACA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTCTTGTGTGTGCTAGGCATGTGTGCATATGTG-TCACTTATGCACACA  799

seq1  TGTGCAAAGAGG-CCTGAAACTGACGTTAGATGTTTTCCTGGATCCATCT  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGAGGCCCTGAAACTGACGTTAGATGTTTTCCTGGATCCATCT  849

seq1  CCACTTTGTTTACTAGGCAAGGCCTTTCAGTTGAACCCAGAACTCTTTCA  899
      |||||||||||||||||||||||||||   ||| ||||||||||||||||
seq2  CCACTTTGTTTACTAGGCAAGGCCTTTTCATTG-ACCCAGAACTCTTTCA  898

seq1  TAGTCTAATCTAGACTGACTGATTACT-ATTGGTATCTCCTGAGTATGCC  948
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TAGTCTAATCTAGACTGACTGATTACTAATTGGT-TCTCCTGAGTATGCC  947

seq1  TTCTCAGGAATTACAGACAGCCACCATCCTAGCCTAGCCTTTATGTGGGT  998
      ||||||||||||||||||||||||||||||||||||| |||| | |||||
seq2  TTCTCAGGAATTACAGACAGCCACCATCCTAGCCTAG-CTTTTTTTGGGT  996

seq1  TC-ATCTTGATGAGCAGTGCCTCTCAAGTTG  1028
      || |  ||||||| |||||||||||||||||
seq2  TCTACTTTGATGAACAGTGCCTCTCAAGTTG  1027


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