BAC Information

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BAC

Clone NameB6Ng01-053E24
Chromosome5 (Build37)
Map Location 39,436,941 - 39,581,947
singlet/doubletdoublet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053E24.bB6Ng01-053E24.g
ACCDH876396DH876397
length1,0911,033
definitionDH876396|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E24, 5' end.DH876397|Mus musculus domesticus DNA, BAC clone: B6Ng01-053E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,436,941 - 39,438,038)(39,580,911 - 39,581,947)
sequence
gaattccatgtagattttcacagtttggttctagttgattctgacagtat
caggtgacatatttctacacacttccatatttcttatagacagaggttgg
aaccatgagttaggtctgactcaggctcatcagggttggtagactgcaat
ttgctttgtgttgcatttcatcggggcccatttttgctgtgctaaaattc
agatatagattgaaatggagcaaatcagtctcagtagctgattgtctttc
taaggtaggattccagcactgatgctcaaagcttattttagccaattatt
ttcaatcagagctttaaaacatttttctagatttatagttcttttttaaa
atttgcaagctaggattagtctgtaaataaattttcttggtggtttcttt
accaccaagagctacttgttttctgtgccgtgcaatttggacaagagata
caagacaaatatttacttctaatgtctagagaaaacagttgatagttact
gcccaagttacatcctgtgatagctactaaggtcatttcttcttccgctt
ctcctccttcccctcctcctcctccttgtccttcttctcctttgtttctt
cttctgtttttgtctctccccattttctctttatttcagattcatttttc
aaattttattttcccttattaatagctgtataccacattctgagaaagat
atagagaaaggaagtttatttggttcacagtttggtccaaagcaaaagac
tcttacctggtgaccagcctctttgtaaagttccaatgtggtacaaagaa
aggcatggagacaggccacatgcaagaacccaggcagaatgttatagcag
actacttcaatataactcgttaccccattaaccatatgaccatacatgta
gtcagaatcttttaaagtctcccctgctctcaccccttcatatctcatgc
tcagcattaactttcattctgatttcaaaggagaacttccttcaaaccag
cagaccacccgctcttaaaagttgactgatattgagcaagttgcatttat
cattcctttgatgttaattacagaatctttggccattggaa
gaattctccttctgtgtatgtgtctctaatgtttccccttttataagaaa
aaaaaaacagacctatgggacaacggccctcagtaatgaccctgttctag
aatgaccatacccatgaccatacccatcaagacctatcagcaaatacggc
cataatttgacttcgtataagatggtactttgacatacatatgactaagg
ggacataatctaatctttaataagtgtgattgtgaaagagtaaagagaaa
aaagacagttgccaggacttaaatggataaagggacaaatgaaaattaag
ggagttaccctacctccgagattacaaaacaaaaacaaaaacaaaacaaa
aaacatgatttaaaagctgtgtgattgaccagtgatggaaagactgggga
agaacaggtgatctatcataagcaggtgtgttctgacatgcctttaaagt
ttctaaagaggcatgtcatgtgggtgtcaagctatatgaatctgaagata
agagtagtagtgatgagatagaacattttgttcatcaaatatcagtgcta
ggagaagcattgggctgcctgaggttatctggtaatagaacgctaacaga
aaatgtggcccaggacttcagaatcaccacatttaagaaaaattaaaaag
aggtcagtaaaatgagaaccacaaaatatttgcgttataacaataggtag
aaagttccagaagcaagggtaagtatatctgccgttgcctctgagaggta
tagaaacatgagccatcagagaagttcatggacccagagaacgtaacata
catagtggaccccttgccaaagttcttttcctgtagtgataagacagagg
ccaagctggagaagactgacaaaatagaaaagcaaggctcttctgggctg
ttttatttaaggaagacatcagtggggcaaattatgatgagagtgggatt
tcttttctgatagataattgtgctttgctgagaatggccagcaaggcatg
aaccaataatgaagcagggtctatcaggttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39436941_39438038
seq2: B6Ng01-053E24.b_43_1133

seq1  GAATTCCATGTAGATTTTCACAGTTTGGTTCTAGTTGATTCTGACAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTAGATTTTCACAGTTTGGTTCTAGTTGATTCTGACAGTAT  50

seq1  CAGGTGACATATTTCTACACACTTCCATATTTCTTATAGACAGAGGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACATATTTCTACACACTTCCATATTTCTTATAGACAGAGGTTGG  100

seq1  AACCATGAGTTAGGTCTGACTCAGGCTCATCAGGGTTGGTAGACTGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGTTAGGTCTGACTCAGGCTCATCAGGGTTGGTAGACTGCAAT  150

seq1  TTGCTTTGTGTTGCATTTCATCGGGGCCCATTTTTGCTGTGCTAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTGTTGCATTTCATCGGGGCCCATTTTTGCTGTGCTAAAATTC  200

seq1  AGATATAGATTGAAATGGAGCAAATCAGTCTCAGTAGCTGATTGTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGATTGAAATGGAGCAAATCAGTCTCAGTAGCTGATTGTCTTTC  250

seq1  TAAGGTAGGATTCCAGCACTGATGCTCAAAGCTTATTTTAGCCAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGGATTCCAGCACTGATGCTCAAAGCTTATTTTAGCCAATTATT  300

seq1  TTCAATCAGAGCTTTAAAACATTTTTCTAGATTTATAGTTCTTTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGAGCTTTAAAACATTTTTCTAGATTTATAGTTCTTTTTTAAA  350

seq1  ATTTGCAAGCTAGGATTAGTCTGTAAATAAATTTTCTTGGTGGTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAGCTAGGATTAGTCTGTAAATAAATTTTCTTGGTGGTTTCTTT  400

seq1  ACCACCAAGAGCTACTTGTTTTCTGTGCCGTGCAATTTGGACAAGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAGAGCTACTTGTTTTCTGTGCCGTGCAATTTGGACAAGAGATA  450

seq1  CAAGACAAATATTTACTTCTAATGTCTAGAGAAAACAGTTGATAGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAAATATTTACTTCTAATGTCTAGAGAAAACAGTTGATAGTTACT  500

seq1  GCCCAAGTTACATCCTGTGATAGCTACTAAGGTCATTTCTTCTTCCGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTTACATCCTGTGATAGCTACTAAGGTCATTTCTTCTTCCGCTT  550

seq1  CTCCTCCTTCCCCTCCTCCTCCTCCTTGTCCTTCTTCTCCTTTGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTCCCCTCCTCCTCCTCCTTGTCCTTCTTCTCCTTTGTTTCTT  600

seq1  CTTCTGTTTTTGTCTCTCCCCATTTTCTCTTTATTTCAGATTCATTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTTTGTCTCTCCCCATTTTCTCTTTATTTCAGATTCATTTTTC  650

seq1  AAATTTTATTTTCCCTTATTAATAGCTGTATACCACATTCTGAGAAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATTTTCCCTTATTAATAGCTGTATACCACATTCTGAGAAAGAT  700

seq1  ATAGAGAAAGGAAGTTTATTTGGTTCACAGTTTGGTCCAAAGCAAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAGGAAGTTTATTTGGTTCACAGTTTGGTCCAAAGCAAAAGAC  750

seq1  TCTTACCTGGTGACCAGCCTCTTTGTAAAGTTCCAATGTGGTACAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGGTGACCAGCCTCTTTGTAAAGTTCCAATGTGGTACAAAGAA  800

seq1  AGGCATGGAGACAGGCCACATGCAAGAACCCAGGCAGAATGTTATAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGCATGGAGACAGGCCACATGCAAGAACCCAGGCAGAATGTTATAGCA-  849

seq1  GACTACTTCAATATAACTCGTTACCCCATTAACCATATGACCATACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTCAATATAACTCGTTACCCCATTAACCATATGACCATACATGT  899

seq1  AGTCAGAAATCTTTTAAAGGTCTCACCTGCTCTCACCCCTTCATATCTCA  950
      |||||| ||||||||||| ||||| |||||||||||||||||||||||||
seq2  AGTCAG-AATCTTTTAAA-GTCTCCCCTGCTCTCACCCCTTCATATCTCA  947

seq1  TGCTCAGCATTAACTTTCAATCTGAATTTCAAAGGAGAAACTTCCTTCAA  1000
      ||||||||||||||||||| |||| |||||||||||| ||||||||||||
seq2  TGCTCAGCATTAACTTTCATTCTG-ATTTCAAAGGAG-AACTTCCTTCAA  995

seq1  ACCAGCAGACCACCCGCTCTTAAACAGTGACTGAATTTTAGCCAGTTGCA  1050
      ||||||||||||||||||||||||   |||||||  || ||| |||||||
seq2  ACCAGCAGACCACCCGCTCTTAAAAGTTGACTGATATTGAGCAAGTTGCA  1045

seq1  TTTATCATTCTTTTGATGTTAAAATTACAGTATCTTTGGCCATTGGAA  1098
      |||||||||| |||||||||  |||||||| |||||||||||||||||
seq2  TTTATCATTCCTTTGATGTT--AATTACAGAATCTTTGGCCATTGGAA  1091

seq1: chr5_39580911_39581947
seq2: B6Ng01-053E24.g_68_1100 (reverse)

seq1  TCTAACTTGATAGACCTTGCTTCATTTATCGTTTCAAGCCTTGCTGGACC  50
      |||||| ||||||||| ||||||| |||| | |||| |||||||||| ||
seq2  TCTAACCTGATAGACCCTGCTTCA-TTATTGGTTCATGCCTTGCTGG-CC  48

seq1  ATTCTCAGCAAAGCACATTTATCTATCAGAAAAGAAATCCCACTCTCATT  100
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  ATTCTCAGCAAAGCACAATTATCTATCAGAAAAGAAATCCCACTCTCA-T  97

seq1  CATAATTTGCCCCACTGATTGTCTTCCTTAATTAAAACAGCCCAGAAGAG  150
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CATAATTTGCCCCACTGA-TGTCTTCCTTAAATAAAACAGCCCAGAAGAG  146

seq1  CCTTGCTTTTCTATTTTGTCAGTCTTCTCCAGCTTGGCCTCTGTCTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTTCTATTTTGTCAGTCTTCTCCAGCTTGGCCTCTGTCTTATC  196

seq1  ACTACAGGAAAAGAACTTTGGCAAGGGGTCCACTATGTATGTTACGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGAAAAGAACTTTGGCAAGGGGTCCACTATGTATGTTACGTTCT  246

seq1  CTGGGTCCATGAACTTCTCTGATGGCTCATGTTTCTATACCTCTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCATGAACTTCTCTGATGGCTCATGTTTCTATACCTCTCAGAGG  296

seq1  CAACGGCAGATATACTTACCCTTGCTTCTGGAACTTTCTACCTATTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCAGATATACTTACCCTTGCTTCTGGAACTTTCTACCTATTGTTA  346

seq1  TAACGCAAATATTTTGTGGTTCTCATTTTACTGACCTCTTTTTAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCAAATATTTTGTGGTTCTCATTTTACTGACCTCTTTTTAATTTTT  396

seq1  CTTAAATGTGGTGATTCTGAAGTCCTGGGCCACATTTTCTGTTAGCGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTGGTGATTCTGAAGTCCTGGGCCACATTTTCTGTTAGCGTTC  446

seq1  TATTACCAGATAACCTCAGGCAGCCCAATGCTTCTCCTAGCACTGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCAGATAACCTCAGGCAGCCCAATGCTTCTCCTAGCACTGATATT  496

seq1  TGATGAACAAAATGTTCTATCTCATCACTACTACTCTTATCTTCAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACAAAATGTTCTATCTCATCACTACTACTCTTATCTTCAGATTC  546

seq1  ATATAGCTTGACACCCACATGACATGCCTCTTTAGAAACTTTAAAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTTGACACCCACATGACATGCCTCTTTAGAAACTTTAAAGGCAT  596

seq1  GTCAGAACACACCTGCTTATGATAGATCACCTGTTCTTCCCCAGTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACACACCTGCTTATGATAGATCACCTGTTCTTCCCCAGTCTTTC  646

seq1  CATCACTGGTCAATCACACAGCTTTTAAATCATGTTTTTTGTTTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGTCAATCACACAGCTTTTAAATCATGTTTTTTGTTTTGTTTT  696

seq1  TGTTTTTGTTTTGTAATCTCGGAGGTAGGGTAACTCCCTTAATTTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTGTAATCTCGGAGGTAGGGTAACTCCCTTAATTTTCATT  746

seq1  TGTCCCTTTATCCATTTAAGTCCTGGCAACTGTCTTTTTTCTCTTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTATCCATTTAAGTCCTGGCAACTGTCTTTTTTCTCTTTACTC  796

seq1  TTTCACAATCACACTTATTAAAGATTAGATTATGTCCCCTTAGTCATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATCACACTTATTAAAGATTAGATTATGTCCCCTTAGTCATATG  846

seq1  TATGTCAAAGTACCATCTTATACGAAGTCAAATTATGGCCGTATTTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAAGTACCATCTTATACGAAGTCAAATTATGGCCGTATTTGCTG  896

seq1  ATAGGTCTTGATGGGTATGGTCATGGGTATGGTCATTCTAGAACAGGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTTGATGGGTATGGTCATGGGTATGGTCATTCTAGAACAGGGTC  946

seq1  ATTACTGAGGGCCGTTGTCCCATAGGTCTGTTTTTTTTTTCTTATAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAGGGCCGTTGTCCCATAGGTCTGTTTTTTTTTTCTTATAAAAG  996

seq1  GGGAAACATTAGAGACACATACACAGAAGGAGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  GGGAAACATTAGAGACACATACACAGAAGGAGAATTC  1033