BAC Information

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BAC

Clone NameB6Ng01-053H02
Chromosome5 (Build37)
Map Location 84,573,335 - 84,708,763
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H02.bB6Ng01-053H02.g
ACCDH876487DH876488
length8701,148
definitionDH876487|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H02, 5' end.DH876488|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,707,841 - 84,708,763)(84,573,335 - 84,574,505)
sequence
gaattctatgttaacaattatttaaggagttcattgatttcataatgatc
ttccagaatccatgattcctttttaaaatttagttgctagtcagcttttt
cagatgataaagaaatctgagttttaatctcactcatctttagacatatt
tgagttttggctttctgaactctctctctctctctctctctctctctctc
tatatatatatatatatatatatatatatatatatatacatatacatata
tatatgtatatgtatatgtatatatatatatatcacatacatacacacac
ataattgtgaaaatgttctgtttgtattttaccaattctctattatatct
agcacgtgttttttcaaggcagaggatatattattcctacattacagtca
aaagacaacatttgtgcaaggtcactatactcatttctccacataacctt
gaaacaaaggtcagatgacacctgtacattcatgacagcgatacagattc
aagcacctctagaatttataaatctgcctttgtcctgaacatgttgccct
ggaggaatatatatggaagatattcatattatatatattacacatatata
cagctatagctatacctctacctgtcttctcttatgagagtccagaacca
gcagtgattatacatgctgtatgcattgtcatccatccttcactaattac
taattactatgattcatatatagtctgattcactattcttctatagtatg
tcattgttatatatcacagatagattactctatattctgcattctattcc
caccagggagtgagctattgctactcatactaatcatggactcagagcta
tcaaacactctctatagaag
gaattcaatgagtatattatttacatatctgcaataagataaataatttc
tgcatttggaactcttatatcagactttgaaccatgtcttcctattgctt
ggataaccaaaataggtaatttcttttctgctatttccagagtactttgt
tattgtgcacatgttctcaccactaacttttgtgcttgaatttgatgaat
taaatgttctcttcctcctccctctttttatttttttctctgttaacctg
tcctttttactatcttcttcacttgcccactgatagaaaaagctctgttt
ataacatcagttaacaattatcaattattaacaattataaggtcaatttt
ttgtttccaataatcatatctttccacaagattaaatccatttttgttca
gtaaatatttccttttatgtggattatattgtcacagaaaatgaacatcc
ttaaaattgatgtgtacatagcatttctaacctcataggttgagaaaagg
cacaaaaatctcatcaatcaaaccactatgctaaagtctttccatctccc
tattttctactcactattacttaatattcctcaataactacttacctatc
aattaataagtatatttataaatgttgttccaattttatcatatatttat
atccacttattttgactcaaactactgtaataggaatatctggatattgt
tcataaggtgttgaaaactaattaaccttttatgtattcctattaaatat
aaaaaaatatgactttgatcacatttccctaatcaaaaacataataaata
cccaaattcctagtgcaacattcaaagtccttctcatctgtaaaatattt
ctgatatcatgggacattaaataactctcaattatatgggatttaagaaa
gcattgttcatattcagaagttaagaaggcaactttagtgattaatgcat
tgattttgtcaaacaccaatggtgcacgcttgtgaataagcacagaactt
agaggacttaagaaagaaacagaacagagaaagttgtgaagtttgatgga
atggctccctaaagacatatttttggttttgtgaacgtggtgaatctgtt
ggtaggattagatttgaacttgaacaggtgggccttggggttaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84707841_84708763
seq2: B6Ng01-053H02.b_43_912 (reverse)

seq1  CTTCTATAGAAGAAAAATGGTTTTGATAGCTCTGGAAGTTTCTATTTGAT  50
      ||||||||| |||     |  |||||||||||||  ||  || |  ||||
seq2  CTTCTATAG-AGA-----GTGTTTGATAGCTCTG--AG--TCCA--TGAT  38

seq1  TAGTATGGAGTTAGCAAATTAGCTCACTCCCTGGTGGGAATTAGAAATGC  100
      |||||| ||| ||||||  ||||||||||||||||||||| ||| |||||
seq2  TAGTAT-GAG-TAGCAA--TAGCTCACTCCCTGGTGGGAA-TAG-AATGC  82

seq1  AGAATATAAAAAAATTAATCTATCTGTGAATATTATAACAAATTTGACAT  150
      |||||||    | | ||||||||||||| ||| ||||||||   ||||||
seq2  AGAATAT----AGAGTAATCTATCTGTG-ATA-TATAACAA---TGACAT  123

seq1  ACTATAAGAAAGAATTAGTGAATCAGACTATAAATATGAAAATCATAGTA  200
      ||||||   ||||| ||||||||||||||||  |||||  ||||||||||
seq2  ACTATA--GAAGAA-TAGTGAATCAGACTAT--ATATG--AATCATAGTA  166

seq1  ATTTAGTAAAATTTAGTGAAAGGGATGGATGACAAATGCATTACAAGCAT  250
      | |||||||   ||||||||  ||||||||||| |||||| ||| |||||
seq2  A-TTAGTAA---TTAGTGAA--GGATGGATGAC-AATGCA-TAC-AGCAT  207

seq1  GTATAATCACTGCCTTGGTTCTGGACTCTCATAAAAGAGAAAAGACAGGT  300
      |||||||||||||  ||||||||||||||||||    ||| |||||||||
seq2  GTATAATCACTGC--TGGTTCTGGACTCTCATA----AGAGAAGACAGGT  251

seq1  AGAGGTATAGCTATAGCTGTATATATGTGTAAATATATATAATATGAATA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGGTATAGCTATAGCTGTATATATGTGT-AATATATATAATATGAATA  300

seq1  TCTTTCCATATATATTCCTCCAGGGCAACATGTTTCAGGACAAAAGGCAG  400
      || ||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TC-TTCCATATATATTCCTCCAGGGCAACATG-TTCAGGAC-AAAGGCAG  347

seq1  ATTTATAAATTCTAGAGGTGCTTGAATCTGTATCGCTGTCATGAATGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATTCTAGAGGTGCTTGAATCTGTATCGCTGTCATGAATGTAC  397

seq1  AGGTGTCATCTGACCTTTGTTTCAAGGTTATGTGGAGAAATGAGTATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCATCTGACCTTTGTTTCAAGGTTATGTGGAGAAATGAGTATAGT  447

seq1  GACCTTGCACAAATGTTGTCTTTTGACTGTAATGTAGGAATAATATATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCACAAATGTTGTCTTTTGACTGTAATGTAGGAATAATATATCC  497

seq1  TCTGCCTTGAAAAAACACGTGCTAGATATAATAGAGAATTGGTAAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGAAAAAACACGTGCTAGATATAATAGAGAATTGGTAAAATAC  547

seq1  AAACAGAACATTTTCACAATTATGTGTGTGTATGTATGTGATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACATTTTCACAATTATGTGTGTGTATGTATGTGATATATATAT  597

seq1  ATATACATATACATATACATATATATATGTATATGTATATATATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATACATATACATATATATATGTATATGTATATATATATATAT  647

seq1  ATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  750
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAG  697

seq1  AGAGTTCAGAAAGCCAAAACTCAAATATGTCTAAAGATGAGTGAGATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAGAAAGCCAAAACTCAAATATGTCTAAAGATGAGTGAGATTAA  747

seq1  AACTCAGATTTCTTTATCATCTGAAAAAGCTGACTAGCAACTAAATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGATTTCTTTATCATCTGAAAAAGCTGACTAGCAACTAAATTTTA  797

seq1  AAAAGGAATCATGGATTCTGGAAGATCATTATGAAATCAATGAACTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATCATGGATTCTGGAAGATCATTATGAAATCAATGAACTCCTT  847

seq1  AAATAATTGTTAACATAGAATTC  923
      |||||||||||||||||||||||
seq2  AAATAATTGTTAACATAGAATTC  870

seq1: chr5_84573335_84574505
seq2: B6Ng01-053H02.g_70_1217

seq1  GAATTCAATGAGTATATTATTTACATATCTGCAATAAGATAAATAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAGTATATTATTTACATATCTGCAATAAGATAAATAATTTC  50

seq1  TGCATTTGGAACTCTTATATCAGACTTTGAACCATGTCTTCCTATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGGAACTCTTATATCAGACTTTGAACCATGTCTTCCTATTGCTT  100

seq1  GGATAACCAAAATAGGTAATTTCTTTTCTGCTATTTCCAGAGTACTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCAAAATAGGTAATTTCTTTTCTGCTATTTCCAGAGTACTTTGT  150

seq1  TATTGTGCACATGTTCTCACCACTAACTTTTGTGCTTGAATTTGATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCACATGTTCTCACCACTAACTTTTGTGCTTGAATTTGATGAAT  200

seq1  TAAATGTTCTCTTCCTCCTCCCTCTTTTTATTTTTTTCTCTGTTAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCTCTTCCTCCTCCCTCTTTTTATTTTTTTCTCTGTTAACCTG  250

seq1  TCCTTTTTACTATCTTCTTCACTTGCCCACTGATAGAAAAAGCTCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTACTATCTTCTTCACTTGCCCACTGATAGAAAAAGCTCTGTTT  300

seq1  ATAACATCAGTTAACAATTATCAATTATTAACAATTATAAGGTCAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCAGTTAACAATTATCAATTATTAACAATTATAAGGTCAATTTT  350

seq1  TTGTTTCCAATAATCATATCTTTCCACAAGATTAAATCCATTTTTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCAATAATCATATCTTTCCACAAGATTAAATCCATTTTTGTTCA  400

seq1  GTAAATATTTCCTTTTATGTGGATTATATTGTCACAGAAAATGAACATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTTCCTTTTATGTGGATTATATTGTCACAGAAAATGAACATCC  450

seq1  TTAAAATTGATGTGTACATAGCATTTCTAACCTCATAGGTTGAGAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGATGTGTACATAGCATTTCTAACCTCATAGGTTGAGAAAAGG  500

seq1  CACAAAAATCTCATCAATCAAACCACTATGCTAAAGTCTTTCCATCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATCTCATCAATCAAACCACTATGCTAAAGTCTTTCCATCTCCC  550

seq1  TATTTTCTACTCACTATTACTTAATATTCCTCAATAACTACTTACCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTACTCACTATTACTTAATATTCCTCAATAACTACTTACCTATC  600

seq1  AATTAATAAGTATATTTATAAATGTTGTTCCAATTTTATCATATATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAGTATATTTATAAATGTTGTTCCAATTTTATCATATATTTAT  650

seq1  ATCCACTTATTTTGACTCAAACTACTGTAATAGGAATATCTGGATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTATTTTGACTCAAACTACTGTAATAGGAATATCTGGATATTGT  700

seq1  TCATAAGGTGTTGAAAACTAATTAACCTTTTATGTATTCCTATTAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGTGTTGAAAACTAATTAACCTTTTATGTATTCCTATTAAATAT  750

seq1  AAAAAAATATGACTTTGATCACATTTCCCTAATCAAAAACATAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATGACTTTGATCACATTTCCCTAATCAAAAACATAATAAATA  800

seq1  CCCAAATTCCTAGTGCAACATTCAAAGTCCTTCTCATCTGT-AAATATTT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCAAATTCCTAGTGCAACATTCAAAGTCCTTCTCATCTGTAAAATATTT  850

seq1  CTGATATCAATGGGACAATTAAATAACTCTCAATTATATGGATTTAAAGA  899
      |||||||| ||||||| ||||||||||||||||||||||||  || ||| 
seq2  CTGATATC-ATGGGAC-ATTAAATAACTCTCAATTATATGGGATTTAAG-  897

seq1  AAAGCAATTGTTCATATTCAGAAGTTAAAAGAAGGCAACCTTAAGTGAAT  949
      ||||| ||||||||||||||||||||  |||||||||| ||| |||| ||
seq2  AAAGC-ATTGTTCATATTCAGAAGTT--AAGAAGGCAA-CTTTAGTG-AT  942

seq1  AAATGCATTGATTTTGTCCAAACA-CAATGGTGCACGCCTGTGAATAAGC  998
       |||||||||||||||| |||||| ||||||||||||| |||||||||||
seq2  TAATGCATTGATTTTGT-CAAACACCAATGGTGCACGCTTGTGAATAAGC  991

seq1  ACAGAACTTAGAGGAACTTAGAAAGAAACAGAACAGGAGGAAAGTTGTGA  1048
      |||||||||||||||  | |||||||||||||||||   |||||||||| 
seq2  ACAGAACTTAGAGGACTTAAGAAAGAAACAGAACAG--AGAAAGTTGTG-  1038

seq1  AAGTTTGAATGAGAATGGCTCCCCTAAGACCATATATTTGAGTTTTTGGT  1098
      ||||||| ||| |||||||||||  |||| ||||| |||| |||||  ||
seq2  AAGTTTG-ATG-GAATGGCTCCCTAAAGA-CATATTTTTG-GTTTT--GT  1082

seq1  GAACAGTTGGTGAATCTGTTGGTAAGGATTAGATTTGGACTTGACAGGGT  1148
      ||||   |||||||||||||||| ||||||||||||| ||||||   |||
seq2  GAAC--GTGGTGAATCTGTTGGT-AGGATTAGATTTGAACTTGAACAGGT  1129

seq1  GGGCTTTGGGGTTTTAAAAACCC  1171
      |||| ||||||||    ||||||
seq2  GGGCCTTGGGGTT----AAACCC  1148