BAC Information

Click to search

BAC

Clone NameB6Ng01-054I17
Chromosome5 (Build37)
Map Location 144,464,764 - 144,580,876
singlet/doubletdoublet
Overlap genePscd3, Usp42
Upstream geneZfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054I17.bB6Ng01-054I17.g
ACCDH877261DH877262
length1,124994
definitionDH877261|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I17, 5' end.DH877262|Mus musculus domesticus DNA, BAC clone: B6Ng01-054I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,464,764 - 144,465,896)(144,579,876 - 144,580,876)
sequence
gaattctgagggtattttttaaaagatccaaggaggatggggtgtgacgc
cagggacagctgccgtagcctactgtgtcggccctgagccctgctgtctc
ggaaactttgctcactcctcctctttgcttctccctgggtcagcgtttag
aaatgctctcaatgttggccttaaacctatgacagtacccttgaacttgg
ccatctgagagacttagatgcacacactacaggcctcaggtgtgctgtgc
gtgtggacctgcagcagagaaaagaggaacgcttgcgaggctccacagcc
caccgggagggagcccttgaggatggtggcacaaacagctcctgtgctag
gaagaggccagtccctaagatgacaaatgaatgacatcaagctgtaggat
ggctcatggtttgcagcctagtttctagttggtcttttaaacaggccatg
aagtcggtgtgcagagttgggctgggctgagatgggctgggctgggctgg
gcctccacacagtacagccagatgcagggacccaggctctccctcgctca
caccagcagctgctgtgtttgcgctgctctaggggtagtctgaagccaga
gccatggctacatgaggtgtagatggcaccccagcatgtggcacggagag
cttgcactggcctctccccagtgcctgataccctgggtctccctcagttg
tgtggggcacatagctagcatttgctgcaactggctgatgctcctggaaa
agtgtccggagggacactggatgatctgctggaagcctctgcagtcttgg
ggctgtgtacagtgttggattttgagcattcaagtaaaaacacattgatg
tacattggatgtagatgaagctgaattatcatggaggaaaagtgtgtgta
ggcatgtacatgtcagtgtgttgtgtgtgtgcagctgtgtgtgtccactt
acacatgcttgctacacctgtgaaagtgaaaacatgcagacatggaaggt
ttgagcaccgtctctctgcccaggcttgcttcagacgttagcaaagaagc
gttccaacccttgtaacgaagctgtctgtgacttggagtttgggactgcc
caaacccctttgacccgcatctga
gaattcaatgggcaacttaatgacaccctgaacaacgttaacaacgttag
cggagcggagcagaagctcagctgcggggcacttgacgagcgttcacaag
atcctagctcaatccccggcttaacaaataaataaagtattgttactgta
ttattttgtttttagacaggttgaaggattaatctaaggtaatacttttg
aaacactggtgacagctgggcgtggtggcgcacgcctttgatcccagcac
ttgggaggcagaagcaggtggatttctgagttcgaggccagcctggtcta
cagagtgagttcccggacagccggggctacacagagaaaccctgtctcaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaaaccaaccctg
gtgactaatgaaagaaaacgaatgtcttggaatacagactggcttcaaga
ctgcggtctgctgcagcgagactgcggtctgctgcagcgagactgcggtc
tgctgcagcgagactgcggtctgctgcagaattcctacagcgaactgcga
ttgctcattgaggctttgacttttctgactccaccgtgaactggcagtat
gatctcttcaaagcattcagaccacctgtaagacatcacctaactcttgg
ccttacacccattaaaagtgatactgaacgttccacagacctttctatgt
ttaaaggcaaagaatcagctgtgggtgaatactcgtcatctctttagaag
gaggcatcaccacggaagcagagccgtattaacaggaagagggcagaagt
tcgaaagtttgtcctcgctcactcccttcggaataatctttggtgtgcag
acactctatcacggcgtcacagaagagatggacctgcatgtttacagctg
ggccctctctaggacacacacttgctcggctcacgggctacagtaacatg
cacttgcgtgtggggaaatctgcatatcatttaaaggtatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144464764_144465896
seq2: B6Ng01-054I17.b_43_1166

seq1  GAATTCTGAGGGTATTTTTTAAAAGATCCAAGGAGGATGGGGTGTGACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGGTATTTTTTAAAAGATCCAAGGAGGATGGGGTGTGACGC  50

seq1  CAGGGACAGCTGCCGTAGCCTACTGTGTCGGCCCTGAGCCCTGCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGCTGCCGTAGCCTACTGTGTCGGCCCTGAGCCCTGCTGTCTC  100

seq1  GGAAACTTTGCTCACTCCTCCTCTTTGCTTCTCCCTGGGTCAGCGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTTGCTCACTCCTCCTCTTTGCTTCTCCCTGGGTCAGCGTTTAG  150

seq1  AAATGCTCTCAATGTTGGCCTTAAACCTATGACAGTACCCTTGAACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTCAATGTTGGCCTTAAACCTATGACAGTACCCTTGAACTTGG  200

seq1  CCATCTGAGAGACTTAGATGCACACACTACAGGCCTCAGGTGTGCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAGAGACTTAGATGCACACACTACAGGCCTCAGGTGTGCTGTGC  250

seq1  GTGTGGACCTGCAGCAGAGAAAAGAGGAACGCTTGCGAGGCTCCACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACCTGCAGCAGAGAAAAGAGGAACGCTTGCGAGGCTCCACAGCC  300

seq1  CACCGGGAGGGAGCCCTTGAGGATGGTGGCACAAACAGCTCCTGTGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGAGGGAGCCCTTGAGGATGGTGGCACAAACAGCTCCTGTGCTAG  350

seq1  GAAGAGGCCAGTCCCTAAGATGACAAATGAATGACATCAAGCTGTAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCCAGTCCCTAAGATGACAAATGAATGACATCAAGCTGTAGGAT  400

seq1  GGCTCATGGTTTGCAGCCTAGTTTCTAGTTGGTCTTTTAAACAGGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGGTTTGCAGCCTAGTTTCTAGTTGGTCTTTTAAACAGGCCATG  450

seq1  AAGTCGGTGTGCAGAGTTGGGCTGGGCTGAGATGGGCTGGGCTGGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGTGTGCAGAGTTGGGCTGGGCTGAGATGGGCTGGGCTGGGCTGG  500

seq1  GCCTCCACACAGTACAGCCAGATGCAGGGACCCAGGCTCTCCCTCGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACACAGTACAGCCAGATGCAGGGACCCAGGCTCTCCCTCGCTCA  550

seq1  CACCAGCAGCTGCTGTGTTTGCGCTGCTCTAGGGGTAGTCTGAAGCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAGCTGCTGTGTTTGCGCTGCTCTAGGGGTAGTCTGAAGCCAGA  600

seq1  GCCATGGCTACATGAGGTGTAGATGGCACCCCAGCATGTGGCACGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTACATGAGGTGTAGATGGCACCCCAGCATGTGGCACGGAGAG  650

seq1  CTTGCACTGGCCTCTCCCCAGTGCCTGATACCCTGGGTCTCCCTCAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTGGCCTCTCCCCAGTGCCTGATACCCTGGGTCTCCCTCAGTTG  700

seq1  TGTGGGGCACATAGCTAGCATTTGCTGCAACTGGCTGATGCTCCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCACATAGCTAGCATTTGCTGCAACTGGCTGATGCTCCTGGAAA  750

seq1  AGTGTCCGGAGGGACACTGGATGATCTGCTGGAAGCCTCTGCAGTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCGGAGGGACACTGGATGATCTGCTGGAAGCCTCTGCAGTCTTGG  800

seq1  GGCTGTGTACAGTGTTGGATTTTGAGCATTCAAGTAAAAACACATTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTACAGTGTTGGATTTTGAGCATTCAAGTAAAAACACATTGATG  850

seq1  TACATTGGATGTAGATGAAGCTGAATTATCATGGAGGAAAAGGTGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACATTGGATGTAGATGAAGCTGAATTATCATGGAGGAAAA-GTGTGTGT  899

seq1  AGGCATGTACATGTCAGTGTGTTGTGTGTGTGCAGCTGTGTGTGTCCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTACATGTCAGTGTGTTGTGTGTGTGCAGCTGTGTGTGTCCACT  949

seq1  TACACATGCTTGCTAACACCTGTGAAAGTGAAAACATGCAGACATGGAAG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACACATGCTTGCT-ACACCTGTGAAAGTGAAAACATGCAGACATGGAAG  998

seq1  GGTTTGGAGCACAGCTCCTCTGCACAGGGCTGGCTGCAGGACGGTTAGCA  1050
      |  || |||||| |   |||||| || |||| ||| || ||| |||||||
seq2  G--TTTGAGCACCGTCTCTCTGCCCA-GGCTTGCTTCA-GAC-GTTAGCA  1043

seq1  GAG-AGCGTCCCAACCCTTTGTAACAGAGTCTG-CTGTGACTTGGAGTTT  1098
       || ||||| ||||||| ||||||| ||  ||| ||||||||||||||||
seq2  AAGAAGCGTTCCAACCC-TTGTAAC-GAAGCTGTCTGTGACTTGGAGTTT  1091

seq1  GGGGACTGCCCAACCCCTTCTAGACCTGCATCTGA  1133
       |||||||||||| ||| | | |||| ||||||||
seq2  -GGGACTGCCCAAACCCCT-TTGACCCGCATCTGA  1124

seq1: chr5_144579876_144580876
seq2: B6Ng01-054I17.g_66_1059 (reverse)

seq1  TAAGATAACTTTTAAATGAATATGCAGATTTTCCCCACACGGCAAGTGGC  50
      |||||| || |||||||| ||||||||| ||||||||||| |||||| ||
seq2  TAAGAT-ACCTTTAAATG-ATATGCAGA-TTTCCCCACAC-GCAAGT-GC  45

seq1  ATGTTACTGTAGCCCGTGAGCCGAGCAAGTGTGTGTCCTAGGAGAGGGCC  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGTTACTGTAGCCCGTGAGCCGAGCAAGTGTGTGTCCTA-GAGAGGGCC  94

seq1  CAGCTGTAAACATGCAGGTCCATCTCTTCTGTGACGCCGTGATAAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGCTGTAAACATGCAGGTCCATCTCTTCTGTGACGCCGTGAT-AGAGTG  143

seq1  TCTGCACACCAAAGATTATTCCGGAAGGGAGTGAGCGAGGACAAACTTTC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGCACACCAAAGATTATTCC-GAAGGGAGTGAGCGAGGACAAACTTTC  192

seq1  GAACTTCTGCCCTCTTCCTGTTAATACGGCTCTGCTTCCGTGGTGATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGCCCTCTTCCTGTTAATACGGCTCTGCTTCCGTGGTGATGCC  242

seq1  T-CTTCTAAAGAGATGACGAGTATTCACCCACAGCTGATTCTTTGCCTTT  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAAAGAGATGACGAGTATTCACCCACAGCTGATTCTTTGCCTTT  292

seq1  AAACATAGAAAGGTCTGTGGAACGTTCAGTATCACTTTTAATGGGTGTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAAAGGTCTGTGGAACGTTCAGTATCACTTTTAATGGGTGTAA  342

seq1  GGCCAAGAGTTAGGTGATGTCTTACAGGTGGTCTGAATGCTTTGAAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAGTTAGGTGATGTCTTACAGGTGGTCTGAATGCTTTGAAGAGA  392

seq1  TCATACTGCCAGTTCACGGTGGAGTCAGAAAAGTCAAAGCCTCAATGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGCCAGTTCACGGTGGAGTCAGAAAAGTCAAAGCCTCAATGAGC  442

seq1  AATCGCAGTTCGCTGTAGGAATTCTGCAGCAGACCGCAGTCTCGCTGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCAGTTCGCTGTAGGAATTCTGCAGCAGACCGCAGTCTCGCTGCAG  492

seq1  CAGACCGCAGTCTCGCTGCAGCAGACCGCAGTCTCGCTGCAGCAGACCGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCGCAGTCTCGCTGCAGCAGACCGCAGTCTCGCTGCAGCAGACCGC  542

seq1  AGTCTCGAAGCCAGTCTGTATTCCAAGACATTCGTTTTCTTTCATTAGTC  599
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAAGCCAGTCTGTATTCCAAGACATTCGTTTTCTTTCATTAGTC  592

seq1  ACCAGGGTTGGTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCAGGGTTGGTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  642

seq1  TTTTGAGACAGGGTTTCTCTGTGTAGCCCCGGCTGTCCGGGAACTCACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTGTAGCCCCGGCTGTCCGGGAACTCACTC  692

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCC  742

seq1  AAGTGCTGGGATCAAAGGCGTGCGCCACCACGCCCAGCTGTCACCAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATCAAAGGCGTGCGCCACCACGCCCAGCTGTCACCAGTGT  792

seq1  TTCAAAAGTATTACCTTAGATTAATCCTTCAACCTGTCTAAAAACAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGTATTACCTTAGATTAATCCTTCAACCTGTCTAAAAACAAAAT  842

seq1  AATACAGTAACAATACTTTATTTATTTGTTAAGCCGGGGATTGAGCTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTAACAATACTTTATTTATTTGTTAAGCCGGGGATTGAGCTAGG  892

seq1  ATCTTGTGAACGCTCGTCAAGTGCCCCGCAGCTGAGCTTCTGCTCCGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGAACGCTCGTCAAGTGCCCCGCAGCTGAGCTTCTGCTCCGCTC  942

seq1  CGCTAACGTTGTTAACGTTGTTCAGGGTGTCATTAAGTTGCCCATTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACGTTGTTAACGTTGTTCAGGGTGTCATTAAGTTGCCCATTGAAT  992

seq1  TC  1001
      ||
seq2  TC  994