BAC Information

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BAC

Clone NameB6Ng01-054J12
Chromosome5 (Build37)
Map Location 109,933,943 - 110,070,371
singlet/doubletdoublet
Overlap geneLOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173
Upstream geneLOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221
Downstream geneLOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J12.bB6Ng01-054J12.g
ACCDH877295DH877296
length1,154832
definitionDH877295|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J12, 5' end.DH877296|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,933,943 - 109,935,109)(110,069,540 - 110,070,371)
sequence
gaattcttcctggtctccaatcatcaaaggataaaattgttaattattgt
ttggaatgctggaatctccttagaggacacatggaagttagaaaattttt
caatagcctttgtgcatgttctgtagcctgactatgaaggagagactgag
gaaagttgcagcagtggatacgacagaagagtagtaagggactggaatga
cttactagactagtaactatatcactgaagctatagatacagatattaag
gagtctaactccatccttgcctgctaaaagtaacagcagtggccatggat
caagagtacaagaaattcagaatcccaatacaaaccaaaacaatttcttt
taatgtgaataactaaaataaccaaaaaaatttttaaaaaaaaatcagaa
cttggtagtcagaggcaatctctaagtttcagtccagcaagcagatgaac
accatttacaactctaatttctgtagatatgccccctttgtctggcttct
gaatgtaccaggcatgtggagaattcaagacagaaaagtgctcaaaaata
tacttgtgccttacattctagattctcctagaagatacctatggtgaaag
tatttcatactccctgagagccctgcttactccttccatgatccttgagt
tgaccttgaaggtccagggtagaaccagattctactgaacacctcctcca
aatgattgttccttgacatcctttgatggcatctgttgatagcattgacc
taaaaagcaaagcagctctcactgtgactgcttagtctcacctcttttct
caattctttttgtttgtttactaattggaaatgggtagaaatgcatatgc
cttgacctaagacaataacttgcaggagttggttcttttcttccaccatg
tggggcccagggactgaactcagatatgcaggtttgtcaacaaataactt
taccctctgagccatcttaccaggcttttaaaagtagcatagtcagctac
ttttgactttcaaatattgtctgtaaaattagtcttacatttatatgtta
atatttctttttcttctatggaagatttttctttttattctatgcatatg
gagtgttattcttgcatctaccttgcatgaagaagaaggcaatagaactc
atta
gaattccattataggtggcttacaaccatctatgagttctaatgccctca
aattcatagagatctgtctgaaaatgcttcccaagtgaaagtattaaagg
cataagacaacatgataagtttcactggtattttaaatacccaatgttta
ataaaaattttttttcattctttccctagaaatattaacaagtttatttt
tggaagacagaagcttaaacccaaatgggtttggagtaacagcaatacct
ctacctttggtacattcagacacttgagaaattaacttttcttggttgta
atttttggtatgatcagtgcctattggggtatctatagacaaactgttac
ttatacttttactcttaaagacagactttgagaaaaattaagacagaaat
aaatagatatgtgatacacaaagtgattaaaataatcccttggctagcat
gagggtgtgtgaaacacacccaactcttaggtgattgtaatgagctcact
accttaaagggttatgtagttctttaaaataattttatatggtttttgtg
agattttttattcatgcattctctatttatataatttagacctctccctc
tcttccttttagctcacccctctcaaatttatcacttctttaatagatag
atagatagatagatagatagatagatagatagatagataggacatactat
gtcaatttattggtgctggtatgtacataagtttaggactgactacttaa
ggattggataacatcatgggaaaatctttggaaataacagtcttctctct
ctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109933943_109935109
seq2: B6Ng01-054J12.b_44_1197

seq1  GAATTCTTCCTGGTCTCCAATCATCAAAGGATAAAATTGTTAATTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGGTCTCCAATCATCAAAGGATAAAATTGTTAATTATTGT  50

seq1  TTGGAATGCTGGAATCTCCTTAGAGGACACATGGAAGTTAGAAAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCTGGAATCTCCTTAGAGGACACATGGAAGTTAGAAAATTTTT  100

seq1  CAATAGCCTTTGTGCATGTTCTGTAGCCTGACTATGAAGGAGAGACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCTTTGTGCATGTTCTGTAGCCTGACTATGAAGGAGAGACTGAG  150

seq1  GAAAGTTGCAGCAGTGGATACGACAGAAGAGTAGTAAGGGACTGGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGCAGCAGTGGATACGACAGAAGAGTAGTAAGGGACTGGAATGA  200

seq1  CTTACTAGACTAGTAACTATATCACTGAAGCTATAGATACAGATATTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGACTAGTAACTATATCACTGAAGCTATAGATACAGATATTAAG  250

seq1  GAGTCTAACTCCATCCTTGCCTGCTAAAAGTAACAGCAGTGGCCATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAACTCCATCCTTGCCTGCTAAAAGTAACAGCAGTGGCCATGGAT  300

seq1  CAAGAGTACAAGAAATTCAGAATCCCAATACAAACCAAAACAATTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTACAAGAAATTCAGAATCCCAATACAAACCAAAACAATTTCTTT  350

seq1  TAATGTGAATAACTAAAATAACCAAAAAAATTTTTAAAAAAAAATCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGAATAACTAAAATAACCAAAAAAATTTTTAAAAAAAAATCAGAA  400

seq1  CTTGGTAGTCAGAGGCAATCTCTAAGTTTCAGTCCAGCAAGCAGATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGTCAGAGGCAATCTCTAAGTTTCAGTCCAGCAAGCAGATGAAC  450

seq1  ACCATTTACAACTCTAATTTCTGTAGATATGCCCCCTTTGTCTGGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTACAACTCTAATTTCTGTAGATATGCCCCCTTTGTCTGGCTTCT  500

seq1  GAATGTACCAGGCATGTGGAGAATTCAAGACAGAAAAGTGCTCAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTACCAGGCATGTGGAGAATTCAAGACAGAAAAGTGCTCAAAAATA  550

seq1  TACTTGTGCCTTACATTCTAGATTCTCCTAGAAGATACCTATGGTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGCCTTACATTCTAGATTCTCCTAGAAGATACCTATGGTGAAAG  600

seq1  TATTTCATACTCCCTGAGAGCCCTGCTTACTCCTTCCATGATCCTTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATACTCCCTGAGAGCCCTGCTTACTCCTTCCATGATCCTTGAGT  650

seq1  TGACCTTGAAGGTCCAGGGTAGAACCAGATTCTACTGAACACCTCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAAGGTCCAGGGTAGAACCAGATTCTACTGAACACCTCCTCCA  700

seq1  AATGATTGTTCCTTGACATCCTTTGATGGCATCTGTTGATAGCATTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGTTCCTTGACATCCTTTGATGGCATCTGTTGATAGCATTGACC  750

seq1  TAAAAAGCAAAGCAGCTCTCACTGTGACTGCTTAGTCTCACCTCTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAAGCAGCTCTCACTGTGACTGCTTAGTCTCACCTCTTTTCT  800

seq1  CAATTCTTTTTGTTTGTTTACTAATTGGAAATGGGTAGAAATGCATATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTTTTGTTTGTTTACTAATTGGAAATGGGTAGAAATGCATATGC  850

seq1  CTTGACCTAAGACAATAACTTGCAGGAGTTGGTTCTTTTCTTCCACCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTAAGACAATAACTTGCAGGAGTTGGTTCTTTTCTTCCACCATG  900

seq1  TGGGGCCCAGGGACTGAACTCAGATATGCAGGTTTGTCAACAAATAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCAGGGACTGAACTCAGATATGCAGGTTTGTCAACAAATAACTT  950

seq1  TACCCTCTGAGCCATCTTACCAGGCTTTTTAAAAAAGTAGCATAGTCAGC  1000
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TACCCTCTGAGCCATCTTACCAGGCTTTT---AAAAGTAGCATAGTCAGC  997

seq1  TACTTTTGACTTTCAAAATATTGTCTGTAAAAATTAGTCTTACATTTTAA  1050
      |||||||||||||| ||||||||||||| ||||||||||||||||||  |
seq2  TACTTTTGACTTTC-AAATATTGTCTGT-AAAATTAGTCTTACATTT--A  1043

seq1  TATTGTTTTAATATTTTCTTTTTCTTCTATTGAAGATTTTTCTTTTTTAT  1100
      ||   | |||||| |||||||||||||||| ||||||||||| |||||||
seq2  TA---TGTTAATA-TTTCTTTTTCTTCTATGGAAGATTTTTC-TTTTTAT  1088

seq1  TCTATGCATAT-GAGTGGTCTATCTGCATCTACCCCTGCATGACAGAAGA  1149
      ||||||||||| ||||| | |   |||||||| || ||||||| ||||||
seq2  TCTATGCATATGGAGTGTTATTCTTGCATCTA-CCTTGCATGA-AGAAGA  1136

seq1  GGGCATTAGAACTCATTA  1167
       |||| ||||||||||||
seq2  AGGCAATAGAACTCATTA  1154

seq1: chr5_110069540_110070371
seq2: B6Ng01-054J12.g_65_896 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTGTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTGTTATT  50

seq1  TCCAAAGATTTTCCCATGATGTTATCCAATCCTTAAGTAGTCAGTCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGATTTTCCCATGATGTTATCCAATCCTTAAGTAGTCAGTCCTAA  100

seq1  ACTTATGTACATACCAGCACCAATAAATTGACATAGTATGTCCTATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTACATACCAGCACCAATAAATTGACATAGTATGTCCTATCTAT  150

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTAAAGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTAAAGAAGTG  200

seq1  ATAAATTTGAGAGGGGTGAGCTAAAAGGAAGAGAGGGAGAGGTCTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGAGAGGGGTGAGCTAAAAGGAAGAGAGGGAGAGGTCTAAATT  250

seq1  ATATAAATAGAGAATGCATGAATAAAAAATCTCACAAAAACCATATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAGAGAATGCATGAATAAAAAATCTCACAAAAACCATATAAAA  300

seq1  TTATTTTAAAGAACTACATAACCCTTTAAGGTAGTGAGCTCATTACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAAAGAACTACATAACCCTTTAAGGTAGTGAGCTCATTACAATC  350

seq1  ACCTAAGAGTTGGGTGTGTTTCACACACCCTCATGCTAGCCAAGGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAGTTGGGTGTGTTTCACACACCCTCATGCTAGCCAAGGGATTA  400

seq1  TTTTAATCACTTTGTGTATCACATATCTATTTATTTCTGTCTTAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCACTTTGTGTATCACATATCTATTTATTTCTGTCTTAATTTTT  450

seq1  CTCAAAGTCTGTCTTTAAGAGTAAAAGTATAAGTAACAGTTTGTCTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTCTGTCTTTAAGAGTAAAAGTATAAGTAACAGTTTGTCTATAG  500

seq1  ATACCCCAATAGGCACTGATCATACCAAAAATTACAACCAAGAAAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAATAGGCACTGATCATACCAAAAATTACAACCAAGAAAAGTTA  550

seq1  ATTTCTCAAGTGTCTGAATGTACCAAAGGTAGAGGTATTGCTGTTACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAGTGTCTGAATGTACCAAAGGTAGAGGTATTGCTGTTACTCC  600

seq1  AAACCCATTTGGGTTTAAGCTTCTGTCTTCCAAAAATAAACTTGTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATTTGGGTTTAAGCTTCTGTCTTCCAAAAATAAACTTGTTAATA  650

seq1  TTTCTAGGGAAAGAATGAAAAAAAATTTTTATTAAACATTGGGTATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGGAAAGAATGAAAAAAAATTTTTATTAAACATTGGGTATTTAA  700

seq1  AATACCAGTGAAACTTATCATGTTGTCTTATGCCTTTAATACTTTCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGTGAAACTTATCATGTTGTCTTATGCCTTTAATACTTTCACTT  750

seq1  GGGAAGCATTTTCAGACAGATCTCTATGAATTTGAGGGCATTAGAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCATTTTCAGACAGATCTCTATGAATTTGAGGGCATTAGAACTCA  800

seq1  TAGATGGTTGTAAGCCACCTATAATGGAATTC  832
      ||||||||||||||||||||||||||||||||
seq2  TAGATGGTTGTAAGCCACCTATAATGGAATTC  832