BAC Information

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BAC

Clone NameB6Ng01-054J20
Chromosome5 (Build37)
Map Location 15,185,644 - 15,215,081
singlet/doubletdoublet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J20.bB6Ng01-054J20.g
ACCDH877311DH877312
length1,0951,090
definitionDH877311|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J20, 5' end.DH877312|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,213,964 - 15,215,081)(15,185,644 - 15,186,723)
sequence
gaattctcttacttctaacatatagtactctgtaacacagatccattcat
gatcctgtagaccagatactgagtaatatactgtcattactctaaagctg
cccaggaaataaaaatattcacaaaggaatataaaataaatgaggaaggc
cagagccatatgcctcagttttgcttgcaatacagcatcagtgacaacca
cacagcagatataatgaccttccaagtcctactgggaaatagcttttgat
agatgctgttgtccttgaccataagcttgctgtgtttttgctgttgctga
ttagacttatgtttaacatttatgtgaatgggtgtctttcctactgaatg
taatactgtatgtggctcctcccgagagacatttccctcagaggacagaa
ggaatcacaaccattcctggagatgattgttaggcaccatgtgggtcttc
tagagagtagcagatatctaacctgtgaggcatccccacacctcctgcag
ttggcttttgtcctttcagtgcatgtcctgcattagatggacaggatcaa
gtccagttgagtggagaaatctcaggagatgtctaggtacagtgcctgac
ctgcacatactcattgtcctaggctgccaggcatgtatgcagggctccga
tattaccactgcaagttctgtgttcaggatattgcctcagtatcttttat
tttcaattttagagcagatcttcacctctcatataggatgacaatgtaga
ttgggcacttttgtaaaatttagaattgagattagcttcctagaagcttg
attgggaaaaagaaccctcttgatagcatgaaatgtttctattgtttctt
tttaagtcagatatgtttttatttacatttcaagtgttatcccctttcct
ggtttccctctgaaacgccctatctctccctgtcccctgctcacaacatt
cactctggcttctagctgggcattccctacacagggtcaaggctttcctc
ccatgatgacaacaagcatcatctactacatatgcagctgagcatgagtt
ccactgtactttagtggtggtgtagtctgggagctctgagtactg
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacatacacacacacacacatacacatatacacatacac
acacacacacacacacacacacacatacacacatacacacatacacacat
acaattggtttgtttgtttagttttggatgggtttgaggtgtggttgttg
ttggtttgtttttgaaacagagtctgtctatgtagccttggctgtcatgg
aatttgctttgtaaaccaggctggcctcaaattcagagattcaccttctt
ctgtcttctgagacctagtagtcaagtctccacgcccatcagtttgaatt
gttggattaaagattttggacatttgtctactttatcttttctattaaga
tagaaagaagatagcctattattcaaatttactcagaaaattattttata
gtcagtcatggctggaatgcagatataaaaaaatcagattgtttggaact
gaaaaaaaaagataaaaagtttaagaaactctttaaaaatttcccttttt
aaaactggctggccattcatacagctcatgaatcttaaggtttaacaata
taagtgagtagcctcagcttatttcagtttgtcttaaatttaatttaggt
ttaatcatgtgtctatagacctgtacttttatcatcgtgttatttttcct
tataacttaactgtgaacattaatagacctcaaaaaaaataaatacatta
aatccgatgagcacaagatgttcagaattgtaagcaaagtcttgctttgt
tactgtagcttctaggcccaagtacagccattctggggattttgttagcg
ccaaatgacttagaattgtcttgctcatctggtgtcttcaccgtcacaga
gatcaagtgacgtgaaaggaaaggaaagaaacagattgaatcagttctag
atgagcgtgagccacagagctccagagcccctcgcaagctagctacatcg
aaaacacctccctaaagatgcttccagagtgtaggaagagacctcccact
accctggctcaataagggtgttcataatgttaccacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15213964_15215081
seq2: B6Ng01-054J20.b_46_1140 (reverse)

seq1  CAGTACCCCCAGAGCTCCCAGAAACTACACCACCAACTAGAGTACAGTGG  50
      |||||  | ||||||||||||  ||||||||||| |||| ||||||||||
seq2  CAGTA--CTCAGAGCTCCCAG--ACTACACCACC-ACTAAAGTACAGTGG  45

seq1  AACTCATGGCTCCAGCTGCATATGTAGTAGATGATGGCTTTGTTGTTCAT  100
      ||||||| ||| ||||||||||||||||||||||||   |||||| ||||
seq2  AACTCAT-GCT-CAGCTGCATATGTAGTAGATGATG--CTTGTTG-TCAT  90

seq1  CAATGGGAGGAAAGGCCTTGACCCTGTGTAGGGGAATGCCCAGGCTAGGA  150
      | ||||||||||| |||||||||||||||| ||||||||||| |||| ||
seq2  C-ATGGGAGGAAA-GCCTTGACCCTGTGTA-GGGAATGCCCA-GCTA-GA  135

seq1  AGCCAGAGTGGAATGGTTGGTGAGCAGGGGGACAGGGGAGGAGATAGGGC  200
      ||||||||| |||||  | ||||||| ||||||||||   ||||||||||
seq2  AGCCAGAGT-GAATG--TTGTGAGCA-GGGGACAGGG--AGAGATAGGGC  179

seq1  ATTTTCAGAGGGGAAACCAGGAAAGGGGATAACACTTGAAATGTAAATAA  250
        ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -GTTTCAGA-GGGAAACCAGGAAAGGGGATAACACTTGAAATGTAAATAA  227

seq1  AAACATATCTGACTTAAAAAGAAACAATAGAAACATTTCATGCTATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATCTGACTTAAAAAGAAACAATAGAAACATTTCATGCTATCAAG  277

seq1  AGGGGTCCTTTTCCCAATCAAGCTTCTAGGAAGCTAATCTCAATTCTACA  350
      |||| || |||||||||||||||||||||||||||||||||||||||| |
seq2  AGGGTTCTTTTTCCCAATCAAGCTTCTAGGAAGCTAATCTCAATTCTAAA  327

seq1  TTTTACAAAAGTGCCCAATCTACATTGTCATCCTATATGAGAGGTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAAGTGCCCAATCTACATTGTCATCCTATATGAGAGGTGAAGA  377

seq1  TCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAACACA  427

seq1  GAACTAGCAGTGGTAATATCAGAGCCCTGCATACATGCTTGGCAGCCTAG  500
      ||||| |||||||||||||| ||||||||||||||||| |||||||||||
seq2  GAACTTGCAGTGGTAATATCGGAGCCCTGCATACATGCCTGGCAGCCTAG  477

seq1  GACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTGAGAT  527

seq1  TTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGACATGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGACATGCAC  577

seq1  TGAAAGGACAAAATCCAACTGCAGGAGGTGTGGGGATGCCTCACAGGTTA  650
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCACAGGTTA  627

seq1  GATATCTGCTACTCTCTAGAAGACCCACATGGCGCCTAACAATCATCTCC  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATATCTGCTACTCTCTAGAAGACCCACATGGTGCCTAACAATCATCTCC  677

seq1  AGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCGGGAG  727

seq1  GAGCCACATACAGTATTACATTCAGTAGGAAAGACACCCATTCACATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACATACAGTATTACATTCAGTAGGAAAGACACCCATTCACATAAA  777

seq1  TGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGCTTATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGCTTATGG  827

seq1  TCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGGAAG  877

seq1  GTCATTATATCTGCTGTGTGGTTGTCACTGATGCTATATTGCAAGCAAAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCATTATATCTGCTGTGTGGTTGTCACTGATGCTGTATTGCAAGCAAAA  927

seq1  CTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATATTCCTTTGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATATTCCTTTGTGA  977

seq1  ATATTTTTATTTCCTCGGCAGCTTTAGAGTAATGGCGGTATATTACTCAA  1050
      ||||||||||||||| |||||||||||||||||| | |||||||||||| 
seq2  ATATTTTTATTTCCTGGGCAGCTTTAGAGTAATGACAGTATATTACTCAG  1027

seq1  TATCTGGTCCACAGGATCATGAATGGATGTGTGTTACAGAGTACTATATG  1100
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TATCTGGTCTACAGGATCATGAATGGATCTGTGTTACAGAGTACTATATG  1077

seq1  TTAGAAGTAAGAAAATTC  1118
      |||||||||||| |||||
seq2  TTAGAAGTAAGAGAATTC  1095

seq1: chr5_15185644_15186723
seq2: B6Ng01-054J20.g_67_1156

seq1  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAG--------CAT  42
      |||||||||||||||||||||||||||||||||||||||        |||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACATACATACACACATACACACACACACACATACACATATACACAT----  88
      ||||||||||| ||||||||||||||||||||||||||||||||||    
seq2  ACATACATACATACATACACACACACACACATACACATATACACATACAC  100

seq1  ------------------------ATACACACATACACACATACACACAT  114
                              ||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATACACACATACACACATACACACAT  150

seq1  ACAATTGGTTTGTCTGTTTAGTTTTGGTTGGGTTTGAGGTGTGGTTGTTG  164
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  ACAATTGGTTTGTTTGTTTAGTTTTGGATGGGTTTGAGGTGTGGTTGTTG  200

seq1  TTGGATTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTGTCATGG  214
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTGTCATGG  250

seq1  AATTTGCTTTGTAAACCAGGCTGGCCTCAAATTCAGAGATTCACCTTCTT  264
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTTGTAAACCAGGCTGGCCTCAAATTCAGAGATTCACCTTCTT  300

seq1  CTGTCTTCTGAGACCGAATAGTCAAGTCTCCACGCCCAGCAGTTTGAATT  314
      ||||||||||||||| | |||||||||||||||||||| |||||||||||
seq2  CTGTCTTCTGAGACCTAGTAGTCAAGTCTCCACGCCCATCAGTTTGAATT  350

seq1  GTTGGATTAAAGATTTTGGACATTTGTCTACTTTATCTTTTCTATTAAGA  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTAAAGATTTTGGACATTTGTCTACTTTATCTTTTCTATTAAGA  400

seq1  TAGAAAGAAGATAGCCTATTATTCAAATTTACTCAGAAAATTATTTTATA  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAGATAGCCTATTATTCAAATTTACTCAGAAAATTATTTTATA  450

seq1  GTCAGTCATGGCTGGAATGCAGATATAAAAAAATCAGATTGTTTGGAACT  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCATGGCTGGAATGCAGATATAAAAAAATCAGATTGTTTGGAACT  500

seq1  GAAAAAAAAAGATAAAAAGTTTAAGAAACTCTTTAAAAATTTCCCTTTTC  514
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAAAAAAAAGATAAAAAGTTTAAGAAACTCTTTAAAAATTTCCCTTTTT  550

seq1  AAAACTGGCTGGCCATTCATACAGCTCATGAATCTTAAGGTTTAACAATA  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGCTGGCCATTCATACAGCTCATGAATCTTAAGGTTTAACAATA  600

seq1  TAAGTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAATTTAGGT  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAATTTAGGT  650

seq1  TTAATCATGTGTCTATAAACCTGTACTTTTATCATCGTGTTATTTTTCCT  664
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAATCATGTGTCTATAGACCTGTACTTTTATCATCGTGTTATTTTTCCT  700

seq1  TATAACTTAACTGTTAACATTAATAGACCTTAAAAAAAATAAATACATTT  714
      |||||||||||||| ||||||||||||||| |||||||||||||||| ||
seq2  TATAACTTAACTGTGAACATTAATAGACCTCAAAAAAAATAAATACA-TT  749

seq1  AAATCCGATGAGCACAAGATGTTCAGAATTGTTAGCAAACGTCTTGCTTT  764
      |||||||||||||||||||||||||||||||| |||||| ||||||| ||
seq2  AAATCCGATGAGCACAAGATGTTCAGAATTGTAAGCAAA-GTCTTGC-TT  797

seq1  TGTTACTGTAGCTTCTAGGCCCCAAGTACAGCCATTCTTGGGATTTCTGT  814
      ||||||||||||||||||| |||||||||||||||||| ||||||| |||
seq2  TGTTACTGTAGCTTCTAGG-CCCAAGTACAGCCATTCTGGGGATTT-TGT  845

seq1  TAACGCCGAAGTGACTTAGGAATTGCCTTGCTCATCTGGTGTCTTACACG  864
      || |||| || ||||||| |||||| |||||||||||||||||||   ||
seq2  TAGCGCC-AAATGACTTA-GAATTGTCTTGCTCATCTGGTGTCTTCACCG  893

seq1  TCACAGAGAATCCAAGTGACGTGAAAAAGGAAAGGAAAGGAAACAGAATG  914
      |||||||||   |||||||||||  ||||||||||||| ||||||| || 
seq2  TCACAGAGA--TCAAGTGACGTG--AAAGGAAAGGAAA-GAAACAG-ATT  937

seq1  GGATCAGTTTCTGGATGAGCGTGAGCCACTAGAGCCTCAGAGCCACTCAC  964
      | ||||| |||| |||||||||||||||| |||||  ||||||| ||| |
seq2  GAATCAG-TTCTAGATGAGCGTGAGCCAC-AGAGCTCCAGAGCCCCTCGC  985

seq1  AAGCTAGCTAACACCGAAAACACCTCCTCAACAGAGGCTCCCAGAAAGTG  1014
      ||||||||| ||| ||||||||||||| | | ||| ||| ||||  ||||
seq2  AAGCTAGCT-ACATCGAAAACACCTCC-CTAAAGATGCTTCCAG--AGTG  1031

seq1  TAAGGGAAGAGACTCCGCACTACACCTGGCTCAATTAAGTGTGTTTCATA  1064
      ||  |||||||||  | |||||| |||||||||| |||| ||| ||||||
seq2  TA--GGAAGAGACCTCCCACTAC-CCTGGCTCAA-TAAGGGTG-TTCATA  1076

seq1  ATTGTTATCAACAAAA  1080
      | ||||| | ||||||
seq2  A-TGTTA-CCACAAAA  1090