BAC Information

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BAC

Clone NameB6Ng01-054N09
Chromosome5 (Build37)
Map Location 149,224,283 - 149,353,396
singlet/doubletdoublet
Overlap geneLOC100041842, Ubl3
Upstream geneLOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1
Downstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N09.bB6Ng01-054N09.g
ACCDH877472DH877473
length1,117780
definitionDH877472|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N09, 5' end.DH877473|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,352,266 - 149,353,396)(149,224,283 - 149,225,059)
sequence
gaattctctgtgtcgtgaaaacatgtgcatgttccttctttaaatttagg
ctctgtagcgtgagcaccctcagggtagttagttctcagtgcaggcagcc
tccctccctgaacctacagtcagcctttgtgcctgtcgacctttttatga
ccagtgtctctctttgctgcctttaggattataatttgtctttgtttttt
aggctttatgatttgtgtagagcctttcctggtagttattttgtagtttg
tagatgccttccttgaatttgcctttgtctcgccaccttttgtcacttga
aatttttcctagtgtgtgctctcactctgtttttgagacagtcttctttg
tggctttagctactcttaacctcatgatcctccctcctcagctgagcgcg
ggcttcacaagcatccctgtgtaaatacacatatactacatgcgttcagt
tgtcttcgtttccttttagatttgccttatactgatgttgggacatttca
tggttcccattggtctcccacccctgtgtcagtttagatattttctgcta
acctgtcttctgattcatttatcttttctttccaatatccagttactgag
ttttatctttgaagtcctaaagtgcgtatatgttcagtgtctcactgtgt
gttttcttgggtgcattactcattgtgacgagatgtttttattttcttgt
tttttattatctgattgtttttccttggattatgatgaaaaaagttgtag
agctgaaggacagtttctccaagtaggaacttagccgttaaaggcacttt
ctcacatggactcatctgcgattgagatacaacatgtggcaagattcagt
gtatttgatagcttcccatctggtgtgtggccctctcaaggtctgagttg
aagtttgatgtgtttaccaagatgcttcttgtggtaagttctagatttca
gatagtgaggccaggtgagacccttttagctttgtgttggcctctttggg
ctttcctgattctcactgtgctgtgattcagcacacgtcttgagacgaag
ttgagtgggtgtgtcgggcttgcttactttgagggttcttttacttggtc
taagtcctgggagtttg
gaattccacactgggtggagcttaggcataggagacctcaaagcccagcc
ccacagtgacacacttcctccaacaaggccacacctccaagtaatgcctt
gcctgtgggtcaagcattcaaaccaccgtactagaccatggtcctgtgtg
tgttgtggtgagcctttgggtgaagggtctttgaagccgtggaaatggaa
ggttaactctgagacagcaaaatgcatggtggcagctgaaagcaaccagg
tggtagttactccccaagatggttagtccaaaggtgctgcgtccgttgtg
ttagtcagtgatgtgttttacccgcagccttggagagtttgcggtccttt
tacacatgactacccctcccccacctccccagtcacatttcagaaggttc
cactctactggagatgaaaacagaactcttggctttcataaagtgggttt
ccaggatatctctcccatcccctcaaatatctctgtaatagaaataactc
cattctttgggctggggtaatggctaagctaatgaagtgtttcctggggg
aggcataggtttggaagctttctttctttcttccttccttccttccttct
ttccttccttccttccttccttcctttctttctttctttctttctttctt
tcttaagatttattttgtgagtacactgtagctgtcttcagtcacaccag
aagggggcatctgatcccattacaaatgttttgtgagccaccatgtggtt
gctggtgaattgaacttcaggccttttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149352266_149353396
seq2: B6Ng01-054N09.b_46_1162 (reverse)

seq1  CAAACTACCCAGGACCTAAGGAACCCAGGTAAAAGGAACCCTCAAAGT-A  49
      |||||| |||||||| ||  ||  ||| |||||| ||||||||||||| |
seq2  CAAACT-CCCAGGACTTA--GA--CCAAGTAAAA-GAACCCTCAAAGTAA  44

seq1  GCAAGCCCGACACACCCACTCAACCTCTGTCCTCAAGACGTGTGCTGAAT  99
      |||||||||||||||||||||||| || || |||||||||||||||||||
seq2  GCAAGCCCGACACACCCACTCAACTTC-GT-CTCAAGACGTGTGCTGAAT  92

seq1  CACAGCACAGTGAGAATCAGGAAAGCCCAAAGAGGCCAAACACAAAGCTA  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACAGCACAGTGAGAATCAGGAAAGCCCAAAGAGGCC-AACACAAAGCTA  141

seq1  AAAAGGGTTCTCACCTGGCCTCACTATTCTTGAAATCTAGAACTTACCCA  199
      |||  || |||||||||||||||||||   |||||||||||||||| |||
seq2  AAA--GGGTCTCACCTGGCCTCACTAT--CTGAAATCTAGAACTTA-CCA  186

seq1  CAAGAAGCATCTTGGTAAACACATCAAACTTCAACTCAGACCTTGAGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCATCTTGGTAAACACATCAAACTTCAACTCAGACCTTGAGAGG  236

seq1  GCCACACACCAGATGGGAAGCTATCAAAATACACTGAATCTTGCCACATG  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCACACACCAGATGGGAAGCTATC-AAATACACTGAATCTTGCCACATG  285

seq1  TTGTATCTCAATCGCAGATGAGTCCATGTGAGAAAGTGCCTTTAACGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTCAATCGCAGATGAGTCCATGTGAGAAAGTGCCTTTAACGGCT  335

seq1  AAGTTCCTACTTGGAGAAACTGTCCTTCAGCTCTACAACTTTTTTCATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTACTTGGAGAAACTGTCCTTCAGCTCTACAACTTTTTTCATCA  385

seq1  TAATCCAAGGAAAAACAATCAGATAATAAAAAACAAGAAAATAAAAACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAGGAAAAACAATCAGATAATAAAAAACAAGAAAATAAAAACAT  435

seq1  CTCGTCACAATGAGTAATGCACCCAAGAAAACACACAGTGAGACACTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCACAATGAGTAATGCACCCAAGAAAACACACAGTGAGACACTGAA  485

seq1  CATATACGCACTTTAGGACTTCAAAGATAAAACTCAGTAACTGGATATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACGCACTTTAGGACTTCAAAGATAAAACTCAGTAACTGGATATTG  535

seq1  GAAAGAAAAGATAAATGAATCAGAAGACAGGTTAGCAGAAAATATCTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAGATAAATGAATCAGAAGACAGGTTAGCAGAAAATATCTAAA  585

seq1  CTGACACAGGGGTGGGAGACCAATGGGAACCATGAAATGTCCCAACATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAGGGGTGGGAGACCAATGGGAACCATGAAATGTCCCAACATCA  635

seq1  GTATAAGGCAAATCTAAAAGGAAACGAAGACAACTGAACGCATGTAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGCAAATCTAAAAGGAAACGAAGACAACTGAACGCATGTAGTAT  685

seq1  ATGTGTATTTACACAGGGATGCTTGTGAAGCCCGCGCTCAGCTGAGGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTTACACAGGGATGCTTGTGAAGCCCGCGCTCAGCTGAGGAGG  735

seq1  GAGGATCATGAGGTTAAGAGTAGCTAAAGCCACAAAGAAGACTGTCTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCATGAGGTTAAGAGTAGCTAAAGCCACAAAGAAGACTGTCTCAA  785

seq1  AAACAGAGTGAGAGCACACACTAGGAAAAATTTCAAGTGACAAAAGGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGTGAGAGCACACACTAGGAAAAATTTCAAGTGACAAAAGGTGG  835

seq1  CGAGACAAAGGCAAATTCAAGGAAGGCATCTACAAACTACAAAATAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAAAGGCAAATTCAAGGAAGGCATCTACAAACTACAAAATAACTA  885

seq1  CCAGGAAAGGCTCTACACAAATCATAAAGCCTAAAAAACAAAGACAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGGCTCTACACAAATCATAAAGCCTAAAAAACAAAGACAAATT  935

seq1  ATAATCCTAAAGGCAGCAAAGAGAGACACTGGTCATAAAAAGGTCGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTAAAGGCAGCAAAGAGAGACACTGGTCATAAAAAGGTCGACAG  985

seq1  GCACAAAGGCTGACTGTAGGTTCAGGGAGGGAGGCTGCCTGCACTGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGCTGACTGTAGGTTCAGGGAGGGAGGCTGCCTGCACTGAGAA  1035

seq1  CTAACTACCCTGAGGGTGCTCACGCTACAGAGCCTAAATTTAAAGAAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACCCTGAGGGTGCTCACGCTACAGAGCCTAAATTTAAAGAAGGA  1085

seq1  ACATGCACATGTTTTCACGACACAGAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  ACATGCACATGTTTTCACGACACAGAGAATTC  1117

seq1: chr5_149224283_149225059
seq2: B6Ng01-054N09.g_69_848

seq1  GAATTCCACACTGGGTGGAGCTTAGGCATAGGAGACCTCAAAGCCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTGGGTGGAGCTTAGGCATAGGAGACCTCAAAGCCCAGCC  50

seq1  CCACAGTGACACACTTCCTCCAACAAGGCCACACCTCCAAGTAATGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGACACACTTCCTCCAACAAGGCCACACCTCCAAGTAATGCCTT  100

seq1  GCCTGTGGGTCAAGCATTCAAACCACCGTACTAGACCATGGTCCTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGGTCAAGCATTCAAACCACCGTACTAGACCATGGTCCTGTGTG  150

seq1  TGTTGTGGTGAGCCTTTGGGTGAAGGGTCTTTGAAGCCGTGGAAATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGTGAGCCTTTGGGTGAAGGGTCTTTGAAGCCGTGGAAATGGAA  200

seq1  GGTTAACTCTGAGACAGCAAAATGCATGGTGGCAGCTGAAAGCAACCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACTCTGAGACAGCAAAATGCATGGTGGCAGCTGAAAGCAACCAGG  250

seq1  TGGTAGTTACTCCCCAAGATGGTTAGTCCAAAGGTGCTGCGTCCGTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTACTCCCCAAGATGGTTAGTCCAAAGGTGCTGCGTCCGTTGTG  300

seq1  TTAGTCAGTGATGTGTTTTACCCGCAGCCTTGGAGAGTTTGCGGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTGATGTGTTTTACCCGCAGCCTTGGAGAGTTTGCGGTCCTTT  350

seq1  TACACATGACTACCCCTCCCCCACCTCCCCAGTCACATTTCAGAAGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGACTACCCCTCCCCCACCTCCCCAGTCACATTTCAGAAGGTTC  400

seq1  CACTCTACTGGAGATGAAAACAGAACTCTTGGCTTTCATAAAGTGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACTGGAGATGAAAACAGAACTCTTGGCTTTCATAAAGTGGGTTT  450

seq1  CCAGGATATCTCTCCCATCCCCTCAAATATCTCTGTAATAGAAATAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATATCTCTCCCATCCCCTCAAATATCTCTGTAATAGAAATAACTC  500

seq1  CATTCTTTGGGCTGGGGTAATGGCTAAGCTAATGAAGTGTTTCCTGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTGGGCTGGGGTAATGGCTAAGCTAATGAAGTGTTTCCTGGGGG  550

seq1  AGGCATAGGTTTGGAAGCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGGTTTGGAAGCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCT  600

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTT  650

seq1  TCTTAAGATTTATTTTGTGAGTACACTGTAGCTGTCTTCAGTCACACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATTTATTTTGTGAGTACACTGTAGCTGTCTTCAGTCACACCAG  700

seq1  AAGGGGGCATCTGATCCCATTACAAATG-TTTGTGAGCCACCATGTGGTT  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGGGGCATCTGATCCCATTACAAATGTTTTGTGAGCCACCATGTGGTT  750

seq1  GCTGG-GAATTGAAC-TCAGGCCCTTTGGA  777
      ||||| ||||||||| ||||||| ||||||
seq2  GCTGGTGAATTGAACTTCAGGCCTTTTGGA  780