BAC Information

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BAC

Clone NameB6Ng01-055A10
Chromosome5 (Build37)
Map Location 119,243,239 - 119,369,124
singlet/doubletdoublet
Overlap genenone
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A10.bB6Ng01-055A10.g
ACCDH877606DH877607
length1,000950
definitionDH877606|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A10, 5' end.DH877607|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,368,121 - 119,369,124)(119,243,239 - 119,244,172)
sequence
gaattctgactcccagctgggaagcctccatcattttaactggaaaacac
aggcaggccaaggcttggagtgaagtgggtgttcagtagatggtgaatgc
atgcatgcatgcatgaatgaatgaatgaatgaatgaatatatgttgttcc
ctctgatgatgaaactggagagaaacctcaagatgtcatgtggaatgtat
cttagcaaaaataaaaccaaattaaaaaacaaaaaaacacaaaaaaaccc
caatatgaataggattcttaaaatgccccaccttgggtttagtagttcta
agaacccttccaaaagagaatgccagtcttggggaggggctctccaggcc
cttaccaaggagctattggaagccaatggctgctggacagagagaatcat
ttgttagggtgttcccactagtagagcacccatgctccggtggatggctc
tgcactcatgcagatgtggacaactcacactgaactccgtgaactatcaa
agatatgaagctgggggccacatattgagcagaacttgggaagactcgga
gaagggaaatgggtgtataaagaataagggaaaggtataatagaaacaaa
gttaagctaaaattttaattaccttattatttttatgtgtattggagttt
tgcctgcttgtatgtctgtgcaccagatgcatgcctggtgcccaaagagc
ccagagagagtgttgcagagcccccagacctggagttccagacggttatt
agctgtcatgtgggtgctgaaaacctagaccttgtggaagagcactcagt
gctctttacctctgtgccatcgctctagctccccaaattatatttttaaa
ataaagagaactccaagaattaagaaaatactggctggcaagatggctca
gtgggtaaagtccctaatacacagtccaattattgagcctgacattgtgg
tgggacagaactgaaactgtttttaaaggaaatacccagaagtgagggag

gaattcatcgtggggaatcgaaaataccgaagaaggggctggcacaacgg
cactacaggcaaaggtgcttgctgccaagcctgaggacctgtgatatccc
tggcgcccacgtggtaggaaggagacaactgacttccgcagggtgtcctt
gcatgccctctgcattccctctgtccacagataaataaagccaagcattt
aatttaaaaacaacaaacaaacaaacaaacaaaaaaccaccaaaaaggga
gaagaaagggaaactcaccaggagctagccctcagtttcctcaagtaata
ctgtctgcaaacacggtctacacagctgtcttctagcatctgcctggcac
ggagcttcggaaaaggtgctgagttctgagaatcaaaagacagtgatctt
tcccaggatcccttttggcagctttatttcagttttatttgaggggaaaa
ataggtgtcctggaaaagcattcaaacagctcagaaagacaagggtctgg
ggtgggagtgggggcatggtccgatacgatcagcccagcgcagggcctag
tcatctttgataccctgagtggagaagctggggtctcccatgacatgtgg
cagctgctggcaggggaccaaacactgtggacaccctttctcctaagagc
agtagagagagtgtggcagacatggggagcctttaactgcaagaatccag
atgttgctggctgaaagagaccagcggtggttgaagacagaaagatgaag
gagacctgtttcagccttttcagattaaaaaagtatagaagagaatagtg
cggggggcaattcgggccagtctgggctgtcctgaatgtgacttggagga
ggaggagcaggaggaggagcaggagcagagcaggaggagcaggaggagca
gaggaggagcagatcatgaggatgagcatgatcaggaggagagcaggaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119368121_119369124
seq2: B6Ng01-055A10.b_50_1049 (reverse)

seq1  CTCCCTCACCTCTTGTATTTTCCTTTAAAAAACAGTTTCAGTTCTGTCCC  50
      ||||||||| ||| |   |||||||| |||||||||||||||||||||||
seq2  CTCCCTCACTTCTGGGTATTTCCTTT-AAAAACAGTTTCAGTTCTGTCCC  49

seq1  ACCACAATGTCAGGCTCAATAATTGGACTTGTGTATTAGGGACTTTTACC  100
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ACCACAATGTCAGGCTCAATAATTGGAC-TGTGTATTAGGGAC-TTTACC  97

seq1  CACTGAGCCATCTTGCCAGCCAGTATTTTCTTAATTCTTGGAGTTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTTGCCAGCCAGTATTTTCTTAATTCTTGGAGTTCTCTT  147

seq1  TATTTTTAAAAATATAATTTGGGGAGCTAGAGCGATGGCACAGAGGTAAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTTAAAAATATAATTTGGGGAGCTAGAGCGATGGCACAGAGGTAAA  196

seq1  GAGCACTGAGTGCTCTTCCACAAGGTCTAGGTTTTCAGCACCCACATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGAGTGCTCTTCCACAAGGTCTAGGTTTTCAGCACCCACATGAC  246

seq1  AGCTAATAACCGTCTGGAACTCCAGGTCTGGGGGCTCTGCAACACTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAACCGTCTGGAACTCCAGGTCTGGGGGCTCTGCAACACTCTCT  296

seq1  CTGGGCTCTTTGGGCACCAGGCATGCATCTGGTGCACAGACATACAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTTGGGCACCAGGCATGCATCTGGTGCACAGACATACAAGCA  346

seq1  GGCAAAACTCCAATACACATAAAAATAATAAGGTAATTAAAATTTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTCCAATACACATAAAAATAATAAGGTAATTAAAATTTTAGCT  396

seq1  TAACTTTGTTTCTATTATACCTTTCCCTTATTCTTTATACACCCATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGTTTCTATTATACCTTTCCCTTATTCTTTATACACCCATTTCC  446

seq1  CTTCTCCGAGTCTTCCCAAGTTCTGCTCAATATGTGGCCCCCAGCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCGAGTCTTCCCAAGTTCTGCTCAATATGTGGCCCCCAGCTTCAT  496

seq1  ATCTTTGATAGTTCACGGAGTTCAGTGTGAGTTGTCCACATCTGCATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGATAGTTCACGGAGTTCAGTGTGAGTTGTCCACATCTGCATGAG  546

seq1  TGCAGAGCCATCCACCGGAGCATGGGTGCTCTACTAGTGGGAACACCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCATCCACCGGAGCATGGGTGCTCTACTAGTGGGAACACCCTA  596

seq1  ACAAATGATTCTCTCTGTCCAGCAGCCATTGGCTTCCAATAGCTCCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGATTCTCTCTGTCCAGCAGCCATTGGCTTCCAATAGCTCCTTGG  646

seq1  TAAGGGCCTGGAGAGCCCCTCCCCAAGACTGGCATTCTCTTTTGGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCTGGAGAGCCCCTCCCCAAGACTGGCATTCTCTTTTGGAAGGG  696

seq1  TTCTTAGAACTACTAAACCCAAGGTGGGGCATTTTAAGAATCCTATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAACTACTAAACCCAAGGTGGGGCATTTTAAGAATCCTATTCAT  746

seq1  ATTGGGGTTTTTTTGTGTTTTTTTGTTTTTTAATTTGGTTTTATTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTTTTTTTGTGTTTTTTTGTTTTTTAATTTGGTTTTATTTTTGC  796

seq1  TAAGATACATTCCACATGACATCTTGAGGTTTCTCTCCAGTTTCATCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACATTCCACATGACATCTTGAGGTTTCTCTCCAGTTTCATCATC  846

seq1  AGAGGGAACAACATATATTCATTCATTCATTCATTCATTCATGCATGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAACAACATATATTCATTCATTCATTCATTCATTCATGCATGCAT  896

seq1  GCATGCATTCACCATCTACTGAACACCCACTTCACTCCAAGCCTTGGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTCACCATCTACTGAACACCCACTTCACTCCAAGCCTTGGCCT  946

seq1  GCCTGTGTTTTCCAGTTAAAATGATGGAGGCTTCCCAGCTGGGAGTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTTTTCCAGTTAAAATGATGGAGGCTTCCCAGCTGGGAGTCAGA  996

seq1  ATTC  1004
      ||||
seq2  ATTC  1000

seq1: chr5_119243239_119244172
seq2: B6Ng01-055A10.g_70_1018

seq1  GAATTCATCGTGGGGAATCGAAAATACCGAAGAAGGGGCTGGCACAACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGTGGGGAATCGAAAATACCGAAGAAGGGGCTGGCACAACGG  50

seq1  CACTACAGGCAAAGGTGCTTGCTGCCAAGCCTGAGGACCTGTGATATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGCAAAGGTGCTTGCTGCCAAGCCTGAGGACCTGTGATATCCC  100

seq1  TGGCGCCCACGTGGTAGGAAGGAGACAACTGACTTCCGCAGGGTGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCCCACGTGGTAGGAAGGAGACAACTGACTTCCGCAGGGTGTCCTT  150

seq1  GCATGCCCTCTGCATTCCCTCTGTCCACAGATAAATAAAGCCAAGCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCTCTGCATTCCCTCTGTCCACAGATAAATAAAGCCAAGCATTT  200

seq1  AATTTAAAAACAACAAACAAACAAACAAACAAAAAACCACCAAAAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAACAACAAACAAACAAACAAACAAAAAACCACCAAAAAGGGA  250

seq1  GAAGAAAGGGAAACTCACCAGGAGCTAGCCCTCAGTTTCCTCAAGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAAACTCACCAGGAGCTAGCCCTCAGTTTCCTCAAGTAATA  300

seq1  CTGTCTGCAAACACGGTCTACACAGCTGTCTTCTAGCATCTGCCTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAAACACGGTCTACACAGCTGTCTTCTAGCATCTGCCTGGCAC  350

seq1  GGAGCTTCGGAAAAGGTGCTGAGTTCTGAGAATCAAAAGACAGTGATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCGGAAAAGGTGCTGAGTTCTGAGAATCAAAAGACAGTGATCTT  400

seq1  TCCCAGGATCCCTTTTGGCAGCTTTATTTCAGTTTTATTTGAGGGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGATCCCTTTTGGCAGCTTTATTTCAGTTTTATTTGAGGGGAAAA  450

seq1  ATAGGTGTCCTGGAAAAGCATTCAAACAGCTCAGAAAGACAAGGGTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTCCTGGAAAAGCATTCAAACAGCTCAGAAAGACAAGGGTCTGG  500

seq1  GGTGGGAGTGGGGGCATGGTCCGATACGATCAGCCCAGCGCAGGGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGTGGGGGCATGGTCCGATACGATCAGCCCAGCGCAGGGCCTAG  550

seq1  TCATCTTTGATACCCTGAGTGGAGAAGCTGGGGTCTCCCATGACATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTGATACCCTGAGTGGAGAAGCTGGGGTCTCCCATGACATGTGG  600

seq1  CAGCTGCTGGCAGGGGACCAAACACTGTGGACACCCTTTCTCCTAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGCAGGGGACCAAACACTGTGGACACCCTTTCTCCTAAGAGC  650

seq1  AGTAGAGAGAGTGTGGCAGACATGGGGAGCCTTTAACTGCAAGAATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAGAGTGTGGCAGACATGGGGAGCCTTTAACTGCAAGAATCCAG  700

seq1  ATGTTGCTGGCTGAAAGAGACCAGCGGTGGTTGAAGACAGAAAGATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTGGCTGAAAGAGACCAGCGGTGGTTGAAGACAGAAAGATGAAG  750

seq1  GAGACCTG-TTCAGCCTTTTCAGATTAAAAAAGTATAGAAGAGAATAGTG  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGTTTCAGCCTTTTCAGATTAAAAAAGTATAGAAGAGAATAGTG  800

seq1  CGGGGGGCAATTCGGGCCAGTCTGGGCTGTCCTGAATGTGACTTGGAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGGCAATTCGGGCCAGTCTGGGCTGTCCTGAATGTGACTTGGAGGA  850

seq1  GGAGGAGCAGGAGGAGGAGCAGGAGCAGGAGCAGGAGGAGCAGGAGGAGC  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGGAGCAGGAGGAGGAGCAGGAGCA-GAGCAGGAGGAGCAGGAGGAGC  899

seq1  AG----------------GAGGAGGAGCAGGAGCAGGAGGAGGAGCAGGA  933
      ||                ||||| ||||| || |||||||| ||||||||
seq2  AGAGGAGGAGCAGATCATGAGGATGAGCATGATCAGGAGGA-GAGCAGGA  948

seq1  G  934
      |
seq2  G  949