BAC Information

Click to search

BAC

Clone NameB6Ng01-055C24
Chromosome5 (Build37)
Map Location 132,528,916 - 132,641,043
singlet/doubletdoublet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055C24.bB6Ng01-055C24.g
ACCDH877719DH877720
length1,172329
definitionDH877719|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C24, 5' end.DH877720|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,528,916 - 132,530,109)(132,640,715 - 132,641,043)
sequence
gaattcccagctattacctacaagcaggagacatcacaaaggccaggtgc
gagcttaaacatttaaagacccaagaaaaatcaatctgctcgcattgatt
tgtcccagcatccacgggggccagtgtaagaaagcttttgctataacaca
ggcagtgagaaatctgaccagcaagctttacgttctcgcgattgtgttta
catgaagatttctggaacgcattctctaatttcactggaggcaaatgaat
tagagcaaactaaacaaaatgacgaagtgggtgtctggcatgggtggtgg
taatcctatcaacagagttatcttttataaaacataagacgccaagtttt
cttttcattagatttcattgtggaaaatatgttctctgtattctggaact
gtgatctcaggagagtgtcaactgttattaatggctggggtggttaatct
tgattgtcaacttgatgggatttagaactaccaaggaaacaaacttccgg
gcttgcctgcgagggagtttctaggctgggttaactgaggtaggaagctg
caccatgaatataggttacacctattttacttatggaatgaataaaaagg
ggaatgagagggggctggtgtgatggctcagttggcaaagttcttgccat
gcgtatatgaagacctaagtttgggacccaaatggctaagcagaaagctg
ggcatggggacattctcttctgattacagcgctagggaaacaaaggcagg
aggattactaggatcggtgggctagccagtcttgccaaatcagcacgttc
tgggttcagtgagaaaaggagagggggaagggagcaaagagaaaggacac
tctggacactgttttagagacgtgttgttgaagtgtagccttttgctatg
ccaaatattgactgctcccagaaatcacagtagatccagctgaccctgac
cccaagtaatccatgatggggaaaagatgctgatagccaatacctggcaa
aaaagacctagtgggatttagagttctaagcttggggtaagagagaacca
gggaaatagagtggagataggagaaagatgccatgggttagatccgaagc
atgcaatgaggcccgtcattggagtaaggcctctcagtggacagagcagc
ataaccatggttattgacgaaa
aaatttgtacaattccagggatagaatggctgttttccaccacctctggg
tggttgttcttccatgtctgagtgtgatgagtaaagaggtgtaggtgtgt
gtaggtgtgtgcgtgtgtgtgttcttgtgcatatatgttcatgcaaacgt
ggatgcaaatacctgctttatgcattcatgacatttttatgtagggtgat
agtatccctgatcagtggccaggagtggcttttggtgaaggtgcagtctc
agttgcaatggaaaccttaggactgaaggagtggtgggaaaaaaaaaaat
gatagactttacaccatgactctggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_132528916_132530109
seq2: B6Ng01-055C24.b_48_1219

seq1  GAATTCCCAGCTATTACCTACAAGCAGGAGACATCACAAAGGCCAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTATTACCTACAAGCAGGAGACATCACAAAGGCCAGGTGC  50

seq1  GAGCTTAAACATTTAAAGACCCAAGAAAAATCAATCTGCTCGCATTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAAACATTTAAAGACCCAAGAAAAATCAATCTGCTCGCATTGATT  100

seq1  TGTCCCAGCATCCACGGGGGCCAGTGTAAGAAAGCTTTTGCTATAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCATCCACGGGGGCCAGTGTAAGAAAGCTTTTGCTATAACACA  150

seq1  GGCAGTGAGAAATCTGACCAGCAAGCTTTACGTTCTCGCGATTGTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGAAATCTGACCAGCAAGCTTTACGTTCTCGCGATTGTGTTTA  200

seq1  CATGAAGATTTCTGGAACGCATTCTCTAATTTCACTGGAGGCAAATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTTCTGGAACGCATTCTCTAATTTCACTGGAGGCAAATGAAT  250

seq1  TAGAGCAAACTAAACAAAATGACGAAGTGGGTGTCTGGCATGGGTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAACTAAACAAAATGACGAAGTGGGTGTCTGGCATGGGTGGTGG  300

seq1  TAATCCTATCAACAGAGTTATCTTTTATAAAACATAAGACGCCAAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTATCAACAGAGTTATCTTTTATAAAACATAAGACGCCAAGTTTT  350

seq1  CTTTTCATTAGATTTCATTGTGGAAAATATGTTCTCTGTATTCTGGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTAGATTTCATTGTGGAAAATATGTTCTCTGTATTCTGGAACT  400

seq1  GTGATCTCAGGAGAGTGTCAACTGTTATTAATGGCTGGGGTGGTTAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCAGGAGAGTGTCAACTGTTATTAATGGCTGGGGTGGTTAATCT  450

seq1  TGATTGTCAACTTGATGGGATTTAGAACTACCAAGGAAACAAACTTCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCAACTTGATGGGATTTAGAACTACCAAGGAAACAAACTTCCGG  500

seq1  GCTTGCCTGCGAGGGAGTTTCTAGGCTGGGTTAACTGAGGTAGGAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTGCGAGGGAGTTTCTAGGCTGGGTTAACTGAGGTAGGAAGCTG  550

seq1  CACCATGAATATAGGTTACACCTATTTTACTTATGGAATGAATAAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAATATAGGTTACACCTATTTTACTTATGGAATGAATAAAAAGG  600

seq1  GGAATGAGAGGGGGCTGGTGTGATGGCTCAGTTGGCAAAGTTCTTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGAGGGGGCTGGTGTGATGGCTCAGTTGGCAAAGTTCTTGCCAT  650

seq1  GCGTATATGAAGACCTAAGTTTGGGACCCAAATGGCTAAGCAGAAAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATATGAAGACCTAAGTTTGGGACCCAAATGGCTAAGCAGAAAGCTG  700

seq1  GGCATGGGGACATTCTCTTCTGATTACAGCGCTAGGGAAACAAAGGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGGACATTCTCTTCTGATTACAGCGCTAGGGAAACAAAGGCAGG  750

seq1  AGGATTACTAGGATCGGTGGGCTAGCCAGTCTTGCCAAATCAGCAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGATTACTAGGATCGGTGGGCTAGCCAGTCTTGCCAAATCAGCACGTTC  800

seq1  TGGGTTCAGTGAGAAAAGGAGAGGGGGAAGGGAGCAAAGAG-AAGGACAC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGGTTCAGTGAGAAAAGGAGAGGGGGAAGGGAGCAAAGAGAAAGGACAC  850

seq1  TCTGGACACTGTTTTAGAGACGTGTTGTTGAAGTGTAGCCTTTTGCTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACACTGTTTTAGAGACGTGTTGTTGAAGTGTAGCCTTTTGCTATG  900

seq1  CCAAATATTGACTGCTCCCAGAAATCACAGGTAGATCCAGCTGACCCTGA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAAATATTGACTGCTCCCAGAAATCACA-GTAGATCCAGCTGACCCTGA  949

seq1  CCCCCAAGTAATCCATGATGGGGAAAAAGATGCTGATAGCCAATACCTGG  999
       |||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  -CCCCAAGTAATCCATGATGGGG-AAAAGATGCTGATAGCCAATACCT-G  996

seq1  GCAGAAAAGACCTAGGTGGGATTTAGAGTTCTAAGGCTTGGGGTAGAGGA  1049
      ||| |||||||||| ||||||||||||||||||| ||||||||||   ||
seq2  GCAAAAAAGACCTA-GTGGGATTTAGAGTTCTAA-GCTTGGGGTAAGAGA  1044

seq1  GAACCAGGGGAAATAGAGGTGGAGATAGGAGAAAGATGCCATGGGTTAGG  1099
      |||||| |||||||||| ||||||||||||||||||||||||||||||| 
seq2  GAACCA-GGGAAATAGA-GTGGAGATAGGAGAAAGATGCCATGGGTTAG-  1091

seq1  AATCACGAAAGCATGGCAATGAGGGCTGGTTAAGTGGAGTTAAGAGCATC  1149
       ||| || |||||| ||||||||| | |  | | ||||| |||| || ||
seq2  -ATC-CG-AAGCAT-GCAATGAGGCCCG--TCATTGGAG-TAAG-GCCTC  1133

seq1  CCAGGTGGGACAGAGCAAGTAATAACTCAAGGTTATTGACAGAAA  1194
       |||   ||||||||||    ||||| || |||||||||| ||||
seq2  TCAG--TGGACAGAGCA--GCATAAC-CATGGTTATTGAC-GAAA  1172

seq1: chr5_132640715_132641043
seq2: B6Ng01-055C24.g_73_401 (reverse)

seq1  CAAACCCGAGTCATGGTGTTAAGTCTCTCATTTTTTTTTTTCCCACCACT  50
      |||||| |||||||||||| |||||| |||||||||||||||||||||||
seq2  CAAACCAGAGTCATGGTGTAAAGTCTATCATTTTTTTTTTTCCCACCACT  50

seq1  CCTTCAGTCCTAAGGTTTCCATTGCAACTGAGACTGCACCTTCACCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTCCTAAGGTTTCCATTGCAACTGAGACTGCACCTTCACCAAAA  100

seq1  GCCACTCCTGGCCACTGATCAGGGATACTATCACCCTACATAAAAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCTGGCCACTGATCAGGGATACTATCACCCTACATAAAAATGTC  150

seq1  ATGAATGCATAAAGCAGGTATTTGCATCCACGTTTGCATGAACATATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCATAAAGCAGGTATTTGCATCCACGTTTGCATGAACATATATG  200

seq1  CACAAGAACACACACACGCACACACCTACACACACCTACACCTCTTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAACACACACACGCACACACCTACACACACCTACACCTCTTTACT  250

seq1  CATCACACTCAGACATGGAAGAACAACCACCCAGAGGTGGTGGAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTCAGACATGGAAGAACAACCACCCAGAGGTGGTGGAAAACAG  300

seq1  CCATTCTATCCCTGGAATTGTACAAATTT  329
      |||||||||||||||||||||||||||||
seq2  CCATTCTATCCCTGGAATTGTACAAATTT  329