BAC Information

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BAC

Clone NameB6Ng01-055E02
Chromosome5 (Build37)5 (Build37)
Map Location 9,980,996 - 9,982,01518,084,511 - 18,084,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCrot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3, LOC100042768
Downstream geneLOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055E02.bB6Ng01-055E02.g
ACCDH877761DH877762
length1,065951
definitionDH877761|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E02, 5' end.DH877762|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,980,996 - 9,982,015)(18,084,511 - 18,084,577)
sequence
gaattctaaacccttgatcttggtcaaggacgcccttggactgttgggac
actggtggaaggaaggcgttagccatgtcagaattcaattttaaaaagca
cttataataggaaagtactgaaagagagcacgtaaatccatatactagac
taatgcgggaatggaactcgggagtaaaaaattactgtataggtagggaa
tgctagactccaggaggagagctttcttgaaactcttttgcctcatgagt
gacttttaagcctttcgacttgtccagcttactcgactggagagcgtagc
aaaaacccaaaactatacaaagaatcaataaaaccaggaactggttcttt
gagaaaatcaacaagatagataaacctttagccagactaaccagagggca
cagagacagtatccaaattaacaaaataagaaataaaaagggagacataa
caacaaaatatatcttaaaataatgaaaaattcataaacaaaataaaaga
ataaaattaaaaaacaattacatgtatgtataatatatttttatgtatat
atgcattacataatcttaaatgaaaagttatgatataacactgtgagaca
agtaatctccaaagatgccattaagtttgttttgtataggcaatctactg
ttaggcatgagggcataaggcatacacttaaaatttcttttcccccagtg
agactctgttagaagaaactattcatttgcaagtagttatcaagtggaga
ttgctccttggttagggacaggggcatttggtcacttctcctttaagctc
tagaactccacttggtgcagaaaaatgcaggctttcctcatgctgcctaa
gtctccgtgagttcatatgtgggttgatcttgactgagagagcactattt
tcttggtgtctcccttccctctgctcttacattcttgtggctccctcttc
tgtatgatcctgagggagtattttttagagacatcccatttatgatcgat
atcagggtctctcactctcagcacaatttctgctgtgtgtgctgtattgt
tccacatctcagcag
gaattccctgaactctgaggggatagattttatggagatatcctaattag
agatgagtcccccaaggtctctcaatctctgcacactgtccagttgtagg
tctctgtatatctttcatgtactagaagaggaagcttctgtgatgatggt
tcagcaaggcactgatttagaagtacagcagaaagttgataggagttatt
ttattgctggtgggattgcaaactggtaaaaccactctggaagtcagtct
ggcgattcctcagaaaattggacatactactactggaagatccagcaatt
cctctcctgagcatatacctagaagaagttccaacttgtaataaggacac
atgctccactatgttcatagcagccttatttataataaccagaagctgga
aagaacccagatgtccctcaacagaggaatggacacagaaaatgtggtat
atttacacaatggagtactactcagctattaaaaacaatgaatttatgaa
attcttgaacaaatggatgcatctggaggatatcattcttagtgaggtaa
cccaatcacaaaagaagtcattagatatgcactcactgataagtggatat
tagcccagaaacttagaatatccaagatgcaatttgcaaaacacatgaaa
ctcaagaagaaggaagaccaaagtgtggatacttcactccttcttagaat
ggggaaaaaatacccatggaaggagttacagagaccaaattcagagctaa
gatggaaggaaagacaattcagaggctgccccacctggagatccatccca
tatacaaccaccaaacccaggcactgttgcatatgacagaaagattttgc
tgacaggatcctgacatagctctctcttgtgagtctatgccagtgcctgg
caaacacataagtggatgctcacagtcatctataggatgaacacagggcc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9980996_9982015
seq2: B6Ng01-055E02.b_102_1110

seq1  GGAAGGAAGGCGTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGCGTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTATA  50

seq1  ATAGGAAAGTACTGAAAGAGAGCACGTAAATCCATATACTAGACTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGTACTGAAAGAGAGCACGTAAATCCATATACTAGACTAATGC  100

seq1  GGGAATGGAACTCGGGAGTAAAAAATTACTGTATAGGTAGGGAATGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAACTCGGGAGTAAAAAATTACTGTATAGGTAGGGAATGCTAG  150

seq1  ACTCCAGGAGGAGAGCTTTCTTGAAACTCTTTTGCCTCATGAGTGACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGAGGAGAGCTTTCTTGAAACTCTTTTGCCTCATGAGTGACTTT  200

seq1  TAAGCCTTTCGACTTGTCCAGCTTACTCGACTGGAGAGCGTAGCAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTCGACTTGTCCAGCTTACTCGACTGGAGAGCGTAGCAAAAAC  250

seq1  CCAAAACTATACAAAGAATCAATAAAACCAGGAACTGGTTCTTTGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTATACAAAGAATCAATAAAACCAGGAACTGGTTCTTTGAGAAA  300

seq1  ATCAACAAGATAGATAAACCTTTAGCCAGACTAACCAGAGGGCACAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAGATAGATAAACCTTTAGCCAGACTAACCAGAGGGCACAGAGA  350

seq1  CAGTATCCAAATTAACAAAATAAGAAATAAAAAGGGAGACATAACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCAAATTAACAAAATAAGAAATAAAAAGGGAGACATAACAACAA  400

seq1  AATATATCTTAAAATAATGAAAAATTCATAAACAAAATAAAAGAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTTAAAATAATGAAAAATTCATAAACAAAATAAAAGAATAAAA  450

seq1  TTAAAAAACAATTACATGTATGTATAATATATTTTTATGTATATATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACAATTACATGTATGTATAATATATTTTTATGTATATATGCAT  500

seq1  TACATAATCTTAAATGAAAAGTTATGATATAACACTGTGAGACAAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATCTTAAATGAAAAGTTATGATATAACACTGTGAGACAAGTAAT  550

seq1  CTCCAAAGATGCCATTAAGTTTGTTTTGTATAGGCAATCTACTGTTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGATGCCATTAAGTTTGTTTTGTATAGGCAATCTACTGTTAGGC  600

seq1  ATGAGGGCATAAGGCATACACTTAAAATTTCTTTTCCCCCAGTGAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCATAAGGCATACACTTAAAATTTCTTTTCCCCCAGTGAGACTC  650

seq1  TGTTAGAAGAAACTATTCATTTGCAAGTAGTTATCAAGTGGAGATTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGAAACTATTCATTTGCAAGTAGTTATCAAGTGGAGATTGCTC  700

seq1  CTTGGTTAGGGACAGGGGCATTTGGTCACTTCTCCTTTAAGCTCTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTAGGGACAGGGGCATTTGGTCACTTCTCCTTTAAGCTCTAGAAC  750

seq1  TCCACTTGGTGCAGAAAAATGCAGGCTTTCCTCATGCTGCCTAAGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGGTGCAGAAAAATGCAGGCTTTCCTCATGCTGCCTAAGTCTCC  800

seq1  GTGAGTTCATATGTGGGTTGATCTTGACTGAGAGAGCACTATTTTCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCATATGTGGGTTGATCTTGACTGAGAGAGCACTATTTTCTTGG  850

seq1  TGTCTCCCTTCCCTCTGCTCTTACATTCTTTGTGGCT-CCTCTTCTGTAT  899
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  TGTCTCCCTTCCCTCTGCTCTTACATTC-TTGTGGCTCCCTCTTCTGTAT  899

seq1  GAATCCTGAGGGAAGGTATTTTTTAGAGACATCCCATTTATGATCGAATA  949
      | |||||||||||  ||||||||||||||||||||||||||||||| |||
seq2  G-ATCCTGAGGGA--GTATTTTTTAGAGACATCCCATTTATGATCG-ATA  945

seq1  TTCCAGGGTCTCTCACTCTCAGCACAATTTCTGGCTGTGTGTTGCTGTAT  999
      |  ||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  T--CAGGGTCTCTCACTCTCAGCACAATTTCT-GCTGTGTG-TGCTGTA-  990

seq1  TTGTTCCCACATCTCCAGCAG  1020
      ||||| |||||||| ||||||
seq2  TTGTT-CCACATCT-CAGCAG  1009

seq1: chr5_18084511_18084577
seq2: B6Ng01-055E02.g_395_461 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||| |||| ||||||||
seq2  CTTATTACAAGTTGGAA  67