BAC Information

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BAC

Clone NameB6Ng01-055E14
Chromosome5 (Build37)
Map Location 41,763,442 - 41,909,683
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC208522
Downstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055E14.bB6Ng01-055E14.g
ACCDH877778DH877779
length1,1561,134
definitionDH877778|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E14, 5' end.DH877779|Mus musculus domesticus DNA, BAC clone: B6Ng01-055E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,763,442 - 41,764,608)(41,908,540 - 41,909,683)
sequence
gaattcaatttattttatatgccttcctggccccactatttcctgtcctt
atattgtaaattgtttcttctttggttcttaatattagatttttttatac
tgtcttacaagcctaaaatgtctcactgtcttcttccaaatgagttgagg
cttttctgtatttcaagtgctcatgtccagttccgtccactttcttcttc
ttgtatctagactgaatttactggattaagtttcctcttctatagttttc
atcttcatgtctgttctgcactctgacttgagtccattcctcctttgtag
attttcttctctttgtagtagaaaacttgtcagttctttcagtaagattt
gtcaatggtacattatgtttttaaaaatctattttcaattttaaaagatt
tacaaatgatgattttccctaaccttggctcctcaaagcttttaagtttc
acactccctagtgagtacaaattagcagttgggtatgagtttacaattga
ctgtaattttctctttgaagacagcattccagatcttccaccatctagtc
tcctcaagataaatcacatttagtttattcaagtaagttattttaccagt
aattagtccctgctgtctcttctgtacaactgttttttcaactagctaga
cctctattctgttctaattggttactttccatgtgtcttgctgatgcagt
tctaacatctttccccaactgctaacaataatgacctttgatctttcagt
ctcttctctaagattttctggttttgtttttgtatttccttccacactta
agataaattaataacgacatcttccaactgactgtttgcatttccccacc
agaaaaatacttgttgagtgcttaatttttatagttatgatttttaattt
taatttaatttgtcaccttttaaactgtgtacatgttcttatttgtttga
cagcttatattctcgtctctgcattcttgtcccttactatttgtgggtat
tctgatggctctgtattgttttattcattcatccaaaactccaaccttgg
atttttttttccttaagtggctatttcatctgggtttgtatccattctat
ggagttcattgaatagagagacacacaggtagttgaattagggtggacat
gaataa
gaattccatatttatgtgttgctggggtaaaagttgcaaagataaagtgt
agattcaaacaagaggtctccatatctctaagtaagtctttagcccaaag
ttggaaggtaatttgggtttatggaaggacttatacaagggaagacaggc
ttgtgtatcaagaagaccaatttggttttattagaaaagaataagttgtg
ctgcaaatgaaccagtttggacacaatataatcaaggatgattatatttt
agtatacatctaatgaaaaccctaagtgaggtcagtgacagtgggttaaa
gggttgcttaaaacctgtcataataaggaattcttgatggaaaattgatt
atgaggaaattaggatggaaatgagtaaaagtagcaatcaaaataagaca
agagtcaaacagagcaaagaataccgagataaaataatgctgggttgggc
atcagggaaaatggcagaataaggacatgggacttttatctcttccactt
tttttttaaaaacaagaattgtaatactgtgggtcagaatcaactctttc
aacgctgtagaaattaaccaaaggcttggaaaaatacaggcaacatcctt
ctttaatgaaagaatactcagaagaaaagttgttatagtctacttttaat
ttttctaattctcattccctcatttttatagcaaccttgaaaatccatcc
tatatattattacatcctataatcatgatgagaaacagaagcctggaagg
ttctagaaagagcagaacaagtttagaactcattcaaagtcctctctcca
ggtacttatcatttgacctgcctgttgatgatttaataaatcagacatca
ctgcttttttctcttgtatattactgagcataagtaatcagggtagtagt
tcaatgcattgctgctgtgggtagtagacaacagttgatgaccacttaac
atggaaagctaggggagagcttgttcaaagagactcagagattttcttga
gactctaaagggctgcaggcatgcttaaggttgtgtgaacatgtaccaag
aactgaaagatggattagatgctaccaacactgaaattaagggccttctg
gggtaatgataaagatgaacaaactgctgattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41763442_41764608
seq2: B6Ng01-055E14.b_48_1203

seq1  GAATTCAATTTATTTTATATGCCTTCCTGGCCCCACTATTTCCTGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTATTTTATATGCCTTCCTGGCCCCACTATTTCCTGTCCTT  50

seq1  ATATTGTAAATTGTTTCTTCTTTGGTTCTTAATATTAGATTTTTTTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAATTGTTTCTTCTTTGGTTCTTAATATTAGATTTTTTTATAC  100

seq1  TGTCTTACAAGCCTAAAATGTCTCACTGTCTTCTTCCAAATGAGTTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACAAGCCTAAAATGTCTCACTGTCTTCTTCCAAATGAGTTGAGG  150

seq1  CTTTTCTGTATTTCAAGTGCTCATGTCCAGTTCCGTCCACTTTCTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTATTTCAAGTGCTCATGTCCAGTTCCGTCCACTTTCTTCTTC  200

seq1  TTGTATCTAGACTGAATTTACTGGATTAAGTTTCCTCTTCTATAGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTAGACTGAATTTACTGGATTAAGTTTCCTCTTCTATAGTTTTC  250

seq1  ATCTTCATGTCTGTTCTGCACTCTGACTTGAGTCCATTCCTCCTTTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGTCTGTTCTGCACTCTGACTTGAGTCCATTCCTCCTTTGTAG  300

seq1  ATTTTCTTCTCTTTGTAGTAGAAAACTTGTCAGTTCTTTCAGTAAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTCTTTGTAGTAGAAAACTTGTCAGTTCTTTCAGTAAGATTT  350

seq1  GTCAATGGTACATTATGTTTTTAAAAATCTATTTTCAATTTTAAAAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGTACATTATGTTTTTAAAAATCTATTTTCAATTTTAAAAGATT  400

seq1  TACAAATGATGATTTTCCCTAACCTTGGCTCCTCAAAGCTTTTAAGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGATGATTTTCCCTAACCTTGGCTCCTCAAAGCTTTTAAGTTTC  450

seq1  ACACTCCCTAGTGAGTACAAATTAGCAGTTGGGTATGAGTTTACAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTAGTGAGTACAAATTAGCAGTTGGGTATGAGTTTACAATTGA  500

seq1  CTGTAATTTTCTCTTTGAAGACAGCATTCCAGATCTTCCACCATCTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTTTCTCTTTGAAGACAGCATTCCAGATCTTCCACCATCTAGTC  550

seq1  TCCTCAAGATAAATCACATTTAGTTTATTCAAGTAAGTTATTTTACCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGATAAATCACATTTAGTTTATTCAAGTAAGTTATTTTACCAGT  600

seq1  AATTAGTCCCTGCTGTCTCTTCTGTACAACTGTTTTTTCAACTAGCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCCCTGCTGTCTCTTCTGTACAACTGTTTTTTCAACTAGCTAGA  650

seq1  CCTCTATTCTGTTCTAATTGGTTACTTTCCATGTGTCTTGCTGATGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTCTGTTCTAATTGGTTACTTTCCATGTGTCTTGCTGATGCAGT  700

seq1  TCTAACATCTTTCCCCAACTGCTAACAATAATGACCTTTGATCTTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATCTTTCCCCAACTGCTAACAATAATGACCTTTGATCTTTCAGT  750

seq1  CTCTTCTCTAAGATTTTCTGGTTTTGTTTTTGTATTTCCTTCCACACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTAAGATTTTCTGGTTTTGTTTTTGTATTTCCTTCCACACTTA  800

seq1  AGATAAATTAATAACGACATCTTCCAACTGACTGTTTGCATTTCCCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTAATAACGACATCTTCCAACTGACTGTTTGCATTTCCCCACC  850

seq1  AGAAAAATACTTGTTGAGTGCTTAATTTTTATAGTTATGATTTTTAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAAATACTTGTTGAGTGCTTAATTTTTATAGTTATGATTTTTAA-TT  899

seq1  TTAATTTAATTTGTCACCTTTTAAACTGTGTACATGTTCTTATTTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAATTTGTCACCTTTTAAACTGTGTACATGTTCTTATTTGTTTG  949

seq1  ACAGCTTATATTTCCTCGTCTCTGCATTCCTTGTCCCTTACTATTTTGTG  1000
      ||||||||||||  |||||||||||||| |||||||||||||| ||||||
seq2  ACAGCTTATATT--CTCGTCTCTGCATT-CTTGTCCCTTACTA-TTTGTG  995

seq1  GGTATTCTGATGGCTCTGTTATTGTTTTTATTTCATTCATCACACACCTC  1050
      |||||||||||||||||| |||||||||   |||||||||| || | |||
seq2  GGTATTCTGATGGCTCTG-TATTGTTTT--ATTCATTCATC-CAAAACTC  1041

seq1  CAACCTTGGATCTTTTTTTCCCTTTAAGTGGCTATTTCATCTGGTTTTGT  1100
      ||||||||||| |||||||||  ||||||||||||||||||||| |||||
seq2  CAACCTTGGATTTTTTTTTCC--TTAAGTGGCTATTTCATCTGGGTTTGT  1089

seq1  ATCTATTCTATGGAGTTCATTTGAAT-TAGAGACA-ACAGCGTAGTTGAT  1148
      ||| ||||||||||||||| ||||||  ||||||| |||| |||||||| 
seq2  ATCCATTCTATGGAGTTCA-TTGAATAGAGAGACACACAG-GTAGTTGAA  1137

seq1  TATGGGTGGACATGAATAA  1167
      |  ||||||||||||||||
seq2  TTAGGGTGGACATGAATAA  1156

seq1: chr5_41908540_41909683
seq2: B6Ng01-055E14.g_71_1204 (reverse)

seq1  AGAATCAGCAGTTTGTTCTATCTTTAATCATTACCCCCAGAAGGCCCTTA  50
      |||||||||||||||||| |||||| ||||||| ||||||||||||||||
seq2  AGAATCAGCAGTTTGTTC-ATCTTT-ATCATTA-CCCCAGAAGGCCCTTA  47

seq1  ATTTCAGTTGTTGGTGAGCATCTAAATCACTCTCTCATGTCTTTGTTACA  100
      ||||||| ||||||| ||||||| ||||  ||| ||| ||  ||| ||||
seq2  ATTTCAG-TGTTGGT-AGCATCT-AATCCATCTTTCA-GTTCTTGGTACA  93

seq1  TGTCCACACAACCTTAAGCATGCCTGCAGCCCTTTAGAGTCTC-AGAAAA  149
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTTCACACAACCTTAAGCATGCCTGCAGCCCTTTAGAGTCTCAAGAAAA  143

seq1  TCTTCTGAGTCTCTTTTGAACAAGCTCTCCCCTAGCTTTCCATGTTAAGT  199
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TC-TCTGAGTCTC-TTTGAACAAGCTCTCCCCTAGCTTTCCATGTTAAGT  191

seq1  GGTCATCAACTGTTGTCTACTACCCACAGCAGCAATGCATTGAACTACTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAACTGTTGTCTACTACCCACAGCAGCAATGCATTGAACTACTA  241

seq1  CCCTGATTACTTATGCTCAGTAAATATACCAAGGGAAAAAAGCAGTGATG  299
      ||||||||||||||||||||| |||||| |||| ||||||||||||||||
seq2  CCCTGATTACTTATGCTCAGT-AATATA-CAAGAGAAAAAAGCAGTGATG  289

seq1  TCTGATTTATTAAATCATCAACAGGCAGGTCAAATGATAAGTACCTGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTATTAAATCATCAACAGGCAGGTCAAATGATAAGTACCTGGAG  339

seq1  AGAGGACTTTGAATGAGTTCTAAACTTGTTCTGCTCTTTCTAGAACCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTTTGAATGAGTTCTAAACTTGTTCTGCTCTTTCTAGAACCTTC  389

seq1  CAGGCTTCTGTTTCTCATCATGATTATAGGATGTAATAATATATAGGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTGTTTCTCATCATGATTATAGGATGTAATAATATATAGGATG  439

seq1  GATTTTCAAGGTTGCTATAAAAATGAGGGAATGAGAATTAGAAAAATTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAGGTTGCTATAAAAATGAGGGAATGAGAATTAGAAAAATTAA  489

seq1  AAGTAGACTATAACAACTTTTCTTCTGAGTATTCTTTCATTAAAGAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACTATAACAACTTTTCTTCTGAGTATTCTTTCATTAAAGAAGGA  539

seq1  TGTTGCCTGTATTTTTCCAAGCCTTTGGTTAATTTCTACAGCGTTGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGTATTTTTCCAAGCCTTTGGTTAATTTCTACAGCGTTGAAAG  589

seq1  AGTTGATTCTGACCCACAGTATTACAATTCTTGTTTTTAAAAAAAAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCTGACCCACAGTATTACAATTCTTGTTTTTAAAAAAAAAGTG  639

seq1  GAAGAGATAAAAGTCCCATGTCCTTATTCTGCCATTTTCCCTGATGCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATAAAAGTCCCATGTCCTTATTCTGCCATTTTCCCTGATGCCCA  689

seq1  ACCCAGCATTATTTTATCTCGGTATTCTTTGCTCTGTTTGACTCTTGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCATTATTTTATCTCGGTATTCTTTGCTCTGTTTGACTCTTGTCT  739

seq1  TATTTTGATTGCTACTTTTACTCATTTCCATCCTAATTTCCTCATAATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATTGCTACTTTTACTCATTTCCATCCTAATTTCCTCATAATCA  789

seq1  ATTTTCCATCAAGAATTCCTTATTATGACAGGTTTTAAGCAACCCTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATCAAGAATTCCTTATTATGACAGGTTTTAAGCAACCCTTTAA  839

seq1  CCCACTGTCACTGACCTCACTTAGGGTTTTCATTAGATGTATACTAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTCACTGACCTCACTTAGGGTTTTCATTAGATGTATACTAAAAT  889

seq1  ATAATCATCCTTGATTATATTGTGTCCAAACTGGTTCATTTGCAGCACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATCCTTGATTATATTGTGTCCAAACTGGTTCATTTGCAGCACAA  939

seq1  CTTATTCTTTTCTAATAAAACCAAATTGGTCTTCTTGATACACAAGCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTTTCTAATAAAACCAAATTGGTCTTCTTGATACACAAGCCTG  989

seq1  TCTTCCCTTGTATAAGTCCTTCCATAAACCCAAATTACCTTCCAACTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTGTATAAGTCCTTCCATAAACCCAAATTACCTTCCAACTTTG  1039

seq1  GGCTAAAGACTTACTTAGAGATATGGAGACCTCTTGTTTGAATCTACACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAGACTTACTTAGAGATATGGAGACCTCTTGTTTGAATCTACACT  1089

seq1  TTATCTTTGCAACTTTTACCCCAGCAACACATAAATATGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGCAACTTTTACCCCAGCAACACATAAATATGGAATTC  1134