BAC Information

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BAC

Clone NameB6Ng01-056H21
Chromosome5 (Build37)3 (Build37)
Map Location 18,084,511 - 18,084,56370,278,113 - 70,279,188
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056H21.bB6Ng01-056H21.g
ACCDH878632DH878633
length9361,069
definitionDH878632|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H21, 5' end.DH878633|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,563)(70,278,113 - 70,279,188)
sequence
gaattcaagaagctggactccagaaaatcaaatatccctactaaaaaaat
ggggtaaagagctaaacaaagaattctcaactaaggcataccaaatggct
gagaagtccttaaagaaatgttcaacatccttaatcatcagggaaatgca
aatcaaaataaccatgagatttcacctcacaccagtaagaatggctaaga
tcaaaatttcaggtgacagcagatgctggcaatgatgtggagaaagagga
acactcctccattgctggtgtgattgcaagcttttataaccactcttgaa
agtagtctggcagttcctcagaaaattggacatagtactactagaagatc
tagcaatatttctcctgagcatatacccagaatatgttccaagttctaat
aaggacacaggctccactatgttcatagcagccttatttataatagccag
aagctggaaagaacccagatgtccctcaatagaggaatggatacagaaaa
tgaggtacatttacacaatgaagtactactcagctatttaaaaacaatga
attcatgaaattcttaggcaaatgaatctggaggatatcatcctgagtga
gataacccaatcacaaaagaactcacatgatatgtacccactgataagcg
gatattagcccagaaacttagaatatccaagatacaattgacaaaacaca
tgaaactcaagaagaagaaagaccaaagtttggatacttcattccttcta
aggatggggaacaaaatactcatggaaggagttacagtgacaagtttgga
gctgagatggaaggataaaagaccatccagagactgccccacctggggat
ccatcccgtatacaatcaccaaacccagacactattgcatatgccagaaa
gattttggacataggaccccgacaggaccctgatat
gaattcaagacatgatttaaaactctccctgtcacagactgactggatga
tggatgatgttaccacgattgacaacgagggtttgagaagaggcaaatta
ctttccacactggctgttcaggctcagattatctgcaaatgaacttgggt
tgttgtttcttaattctatacattaaaaattcaattccaggaacataaat
tctttgtatcagcattgagtttcaaagtaccttctgttagcagagccatg
acaaatgctctgttaccttgttgcactaatggtctgaaatcctgaatcta
cagggggcggggcatatgcctacaacttccagcaagtcttcaaaaacttc
tcaacgtctatctgtggggcttcttcatattgttattcattccgggggga
aaaaaaaacaaaaaacaaacaaacaagaaaaacctagttcatgaaatcga
tgacatgaaaatggaattaatgttcccatcattgataagatattaacatt
aaatatcatcagtaatactgtgttaatatgagtatgtgatttcacaattt
cattttgctctcagatgcattttccctttgtagtaagctggagagaatga
aggctattgattgacttggcttatcttcattcctgtgttccagtatgatc
tggccaagagaaaagactgctctgagaggacttattaagcaaacacaagc
ctgtgctctctcctcttgcaaaagaccaagctacagatctcagcagtgta
gcccctataaagctgaaagtggtctcagaggaggcagccttgtttggtac
catgtaaactcccctcaattttaattttctgagtaaataaatgaccccaa
aatcattctagaattatatagcagcagttgatttagattttccttttgtg
ggcattgtaaatcggcacaccagtctcagcactgcctgcttactgtcttc
tcgggtgtacatgaagccatcaacagagtggatgctgcagactttgcata
tgctactaaacatcgactccaagaattgatcaatttaggacccttgggga
aaaataaattgtttggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084563
seq2: B6Ng01-056H21.b_443_495 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCCTGTGTC  50

seq1  CTT  53
      |||
seq2  CTT  53

seq1: chr3_70278113_70279188
seq2: B6Ng01-056H21.g_66_1134

seq1  GAATTCAAGACATGATTTAAAACTCTCCCTGTCACAGACTGACTGGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACATGATTTAAAACTCTCCCTGTCACAGACTGACTGGATGA  50

seq1  TGGATGATGTTACCACGATTGACAACGAGGGTTTGAGAAGAGGCAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATGTTACCACGATTGACAACGAGGGTTTGAGAAGAGGCAAATTA  100

seq1  CTTTCCACACTGGCTGTTCAGGCTCAGATTATCTGCAAATGAACTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACACTGGCTGTTCAGGCTCAGATTATCTGCAAATGAACTTGGGT  150

seq1  TGTTGTTTCTTAATTCTATACATTAAAAATTCAATTCCAGGAACATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCTTAATTCTATACATTAAAAATTCAATTCCAGGAACATAAAT  200

seq1  TCTTTGTATCAGCATTGAGTTTCAAAGTACCTTCTGTTAGCAGAGCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATCAGCATTGAGTTTCAAAGTACCTTCTGTTAGCAGAGCCATG  250

seq1  ACAAATGCTCTGTTACCTTGTTGCACTAATGGTCTGAAATCCTGAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTCTGTTACCTTGTTGCACTAATGGTCTGAAATCCTGAATCTA  300

seq1  CAGGGGGCGGGGCATATGCCTACAACTTCCAGCAAGTCTTCAAAAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGCGGGGCATATGCCTACAACTTCCAGCAAGTCTTCAAAAACTTC  350

seq1  TCAACGTCTATCTGTGGGGCTTCTTCATATTGTTATTCATTCCGGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGTCTATCTGTGGGGCTTCTTCATATTGTTATTCATTCCGGGGGGA  400

seq1  AAAAAAAACAAAAAACAAACAAACAAGAAAAACCTAGTTCATGAAATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAAAACAAACAAACAAGAAAAACCTAGTTCATGAAATCGA  450

seq1  TGACATGAAAATGGAATTAATGTTCCCATCATTGATAAGATATTAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAAAATGGAATTAATGTTCCCATCATTGATAAGATATTAACATT  500

seq1  AAATATCATCAGTAATACTGTGTTAATATGAGTATGTGATTTCACAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCATCAGTAATACTGTGTTAATATGAGTATGTGATTTCACAATTT  550

seq1  CATTTTGCTCTCAGATGCATTTTCCCTTTGTAGTAAGCTGGAGAGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTCTCAGATGCATTTTCCCTTTGTAGTAAGCTGGAGAGAATGA  600

seq1  AGGCTATTGATTGACTTGGCTTATCTTCATTCCTGTGTTCCAGTATGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTGATTGACTTGGCTTATCTTCATTCCTGTGTTCCAGTATGATC  650

seq1  TGGCCAAGAGAAAAGACTGCTCTGAGAGGACTTATTAAGCAAACACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGAGAAAAGACTGCTCTGAGAGGACTTATTAAGCAAACACAAGC  700

seq1  CTGTGCTCCCTCCTCTTGCAAAAGACCAAGCTACAGATCTCAGCAGTGTA  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTCTCCTCTTGCAAAAGACCAAGCTACAGATCTCAGCAGTGTA  750

seq1  GCCCCTATAAAGCTGAAAGTGGTCCCAGAGGAGGCAGCCTTGTTTGGTAC  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCCCTATAAAGCTGAAAGTGGTCTCAGAGGAGGCAGCCTTGTTTGGTAC  800

seq1  CATGTAAACTCCCCTCAATTTTAATTTTCTGAGTAAATAAATGACCCCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGTAAACTCCCCTCAATTTTAATTTTCTGAGTAAATAAATGACCCC-A  849

seq1  AAATCATTCTAGAATTATATAGCAGCAGTTGATTTAGATTTTCCTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCTAGAATTATATAGCAGCAGTTGATTTAGATTTTCCTTTTGT  899

seq1  GGGCATTGTAAATCGGCACACCAGTCTCAGCACTGCCTGCTTACTGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGTAAATCGGCACACCAGTCTCAGCACTGCCTGCTTACTGTCTT  949

seq1  CTCGGGTGTACAATGAAGCCATCAACAGAGTGGATGCTGCAGACTTTGCA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTGTAC-ATGAAGCCATCAACAGAGTGGATGCTGCAGACTTTGCA  998

seq1  TATGCTACTAAACATCGACCCCAAGACATGATCAATTTAAGGAACCCTTG  1050
      ||||||||||||||||||| ||||||  |||||||||||  | |||||||
seq2  TATGCTACTAAACATCGACTCCAAGAATTGATCAATTTA--GGACCCTTG  1046

seq1  GGGATAAATATAAATTGTTTTGGTCC  1076
      |||  ||| |||||||| ||||||||
seq2  GGG--AAAAATAAATTG-TTTGGTCC  1069