BAC Information

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BAC

Clone NameB6Ng01-056L17
Chromosome5 (Build37)
Map Location 15,148,538 - 15,185,649
singlet/doubletdoublet
Overlap gene4930572O03Rik
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L17.bB6Ng01-056L17.g
ACCDH878800DH878801
length1,1251,113
definitionDH878800|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L17, 5' end.DH878801|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,148,538 - 15,149,666)(15,184,492 - 15,185,649)
sequence
gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtctttggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttgcattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacagcaggatattaggccatgcaactgtatagggagatacagaagct
acatagtacttcaagtgttgctatcatatatgtctaagtgacattttaca
gattaatgccaagtaaaatcaaaatatagtcccctacccattacatctta
aaacacaatgatctatcaacagttgccatttcacagcaaaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagaacatgtatacttatacattctctttgaaattcaaggtggtt
aatttgctttactaccatataaaaacaatctcgctgtggtcaggaaaaaa
agctcattttccatgtttaaaaagtacattggctgggtgtggtggtgcac
gcctttaatcccagctctggggaagcagaggcaagcagatttctgagttg
gaggccagcctggtctacaaagtgagttccaggacagccagggctataca
gagaaagcctgtctagaaaaaccaaaacaaagtacaaattgtctctggca
aggaatacattcatagaccacttagacctatgtgatttggctagaatgcg
gacattccctaattacacacctttaataccaaacaatgaaagtaacgttc
atttatagaaggagagtcatgttttgtaagtgacatctaattgagggcaa
agtgatgaatcaaagagataacagaattgagtcagagatagatatgccca
attcttttgagacagcagaaagaaagaccttaagagagttggggagggag
ggcagattacagagaaccgttacag
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacgtttggaagagcagctgcatggattcagga
tgcacttcatgcccactgggtgccatgctggatggctgtggaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gtgctttctgttcccaagcaaaccacagcactgatctccatctgtttttc
tctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaaaagagaagcctcaaatgggccaaaagccac
aaattgaaaaacaaaagaaaaacaaggctggctgtctactgccagcagga
gttcaccagggagaggagctctgactccaaaatagtcacttttccatttt
gtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaaggatg
ttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttg
tatccaatgctgataactggcagcagaaactctgggagggtcacatctat
gtggtgacacaagaagctttctccagggtctagcacactcttaccaaagc
ctcttgcccaggttctctatctcatctaaatgctcactcgcattaaggga
aaacatggtgtaattggaaatggacagacacatttacttatagttttggc
cataactggacaaggagaaaatctcagctacattccaccaggcccatagc
actttcagaccaaatagaaggatgaaagataggaaatacacacttcagtg
tcagctgtgggcccagtttcaggagatgggagatggtcattttcctcagt
gcagagatgatgccctgtgggtggcattttcactcacagtttggtagtct
gcaggagtctgcttcttatggccctttaagtagcgtgacaacattagaaa
aaacattcaacagcgagggatcctttccctattacagataaaacgaaatt
aggctagttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15148538_15149666
seq2: B6Ng01-056L17.b_47_1171

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCAATTTATTAAAAAATA  50
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50

seq1  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100

seq1  TCAAGTACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150

seq1  AACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAGGACACATAACAAGAAAAATCCATATAGTACAAGTCTTTGGTGTTA  200

seq1  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGAATTTTCAAATCAGAAAGCAAAGAGAAGAATTTGCATTTTCAGTAA  250

seq1  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300

seq1  GGTACAGCAGGATATTAGCCCATGCAATTGTATAGAGAGATACAGAAGCT  350
      |||||||||||||||||| |||||||| ||||||| ||||||||||||||
seq2  GGTACAGCAGGATATTAGGCCATGCAACTGTATAGGGAGATACAGAAGCT  350

seq1  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAAGTGACATTTTACA  400

seq1  GATTAATGCCAAGTAAAATAAAAATATAGTCCCCTACCCATTACATCTTA  450
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATTAATGCCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTA  450

seq1  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAAGAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAAGAAAGCAG  500

seq1  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550

seq1  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTC-AGGTGGT  599
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  ATATATAGA-ACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGGT  599

seq1  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGAAAAA  649

seq1  AAGCTCATTTTCCACATTTAAAAAGTACATTGGCCGGGTGTGGTGGCACA  699
      ||||||||||||||  |||||||||||||||||| |||||||||||  ||
seq2  AAGCTCATTTTCCATGTTTAAAAAGTACATTGGCTGGGTGTGGTGGTGCA  699

seq1  CGCCTTTAATCCCAGCTCTGGGGAGGCAGAGGCAAGCAGATTTCTGAGTT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGCCTTTAATCCCAGCTCTGGGGAAGCAGAGGCAAGCAGATTTCTGAGTT  749

seq1  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATAC  799

seq1  AGAGAAAGCCTGTCTAGAAAAACCAAAACAAAGTACAAATTGTCTCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTGTCTAGAAAAACCAAAACAAAGTACAAATTGTCTCTGGC  849

seq1  AAGGAATACATCCATAGACCACTTAGACCTATGTGATTTGGCTAGAATGC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATACATTCATAGACCACTTAGACCTATGTGATTTGGCTAGAATGC  899

seq1  AGACATTCCCTAATTACACACCTTTAATCCCAAACAATGAAAGTAACGTT  949
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGACATTCCCTAATTACACACCTTTAATACCAAACAATGAAAGTAACGTT  949

seq1  CATTTATAGAAGGAAGAGTCATG-TTTGTAAGTGACATCTAATTGAGGGG  998
      ||||||||||||| ||||||||| |||||||||||||||||||||| |||
seq2  CATTTATAGAAGG-AGAGTCATGTTTTGTAAGTGACATCTAATTGA-GGG  997

seq1  CAAAGTGATGAATCAGAGAGATAACAGAA-TGAGTCAGAGATAGGATATG  1047
      ||||||||||||||| ||||||||||||| ||||||||||||| ||||||
seq2  CAAAGTGATGAATCAAAGAGATAACAGAATTGAGTCAGAGATA-GATATG  1046

seq1  CCCAATTCTTATGAGGACAGCGAGGAAAGAAAGGACTTAAGAGAGTTGGG  1097
      |||||||||| ||| ||||||   |||||||||  |||||||||||||||
seq2  CCCAATTCTTTTGA-GACAGC--AGAAAGAAAGACCTTAAGAGAGTTGGG  1093

seq1  GAGGGAGGGCAGATTACAGAGACAGGTTACAG  1129
      ||||||||||||||||||||||   |||||||
seq2  GAGGGAGGGCAGATTACAGAGAACCGTTACAG  1125

seq1: chr5_15184492_15185649
seq2: B6Ng01-056L17.g_67_1179 (reverse)

seq1  ACTGAACTAGCTATAATTATCTGTTTTTATCCTTGGTAAATAAACAAAGG  50
      |||||||||||  |||||   |  |||||||  |    ||||   |||  
seq2  ACTGAACTAGC-CTAATT---TCGTTTTATCTGT----AATAGGGAAA--  40

seq1  GGATCACTCTGCTTTGTTTGAATGGTTTTTTCTTAAATGTTGTCACGCTT  100
      ||||| ||| |||    |||||| |||||||||  |||||||||||||| 
seq2  GGATCCCTC-GCT---GTTGAAT-GTTTTTTCT--AATGTTGTCACGCT-  82

seq1  AACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGAAGGAACTACCAAAC  150
       ||| |||| |||||||||||||| ||||| |||| ||  ||||||||||
seq2  -ACT-TAAA-GGGCCATAAGAAGC-AGACT-CCTGCAG--ACTACCAAAC  125

seq1  TGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGAGGA  200
      ||||||||||||||  ||||||| |||||||||||||| ||||| |||||
seq2  TGTGAGTGAAAATG--CCACCCACAGGGCATCATCTCT-GCACT-GAGGA  171

seq1  AAACGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACTGAA  250
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGACCATCTCCCATCTCCT-GAAACTGGGCCCACAGCTGACACTGAA  220

seq1  GTGTGTATTTTCCATCCTTCTATTTGTGTATCTTTCATCCTTCTATTTGG  300
      |||||||||| |                ||||||||||||||||||||||
seq2  GTGTGTATTTCC----------------TATCTTTCATCCTTCTATTTGG  254

seq1  TCTGAGAGTGCTATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTTT  350
      ||||| |||||||||||||||||||||||||||||||| ||||||||| |
seq2  TCTGAAAGTGCTATGGGCCTGGTGGAATGTAGCTGAGATTTTCTCCTTGT  304

seq1  CCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATGGCCAAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTAC  354

seq1  ACCATGTTGTCCCTTAATGCGAGTGAGCATTTAGATGAGATAGCGAACCT  450
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  ACCATGTTTTCCCTTAATGCGAGTGAGCATTTAGATGAGATAGAGAACCT  404

seq1  GGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAGGCTTTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTG  454

seq1  TGTCACCACATATATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAG  550
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCACCACATAGATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAG  504

seq1  CATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATACAAGTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTC  554

seq1  TTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAACATCCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCC  604

seq1  ATCATTGACAAAATGTTAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCC  700
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  ATCATTGACAAAATGGAAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCC  654

seq1  CTGGTGAACGCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTT  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAACTCCTGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTT  704

seq1  TTTCAATTTGTGGCTTTTGGCCCGTTTGAGGCTTCTC-TTTTGTTTTCTG  799
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TTTCAATTTGTGGCTTTTGGCCCATTTGAGGCTTCTCTTTTTGTTTTCTG  754

seq1  AAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTTCTGAACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAG  804

seq1  GCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTCTTA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAATTAAGATGATTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTTTTA  854

seq1  AGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGAGAAAAACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAAC  904

seq1  AGAAAGCCCTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGAC  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCACTGACTCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGAC  954

seq1  TTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCA  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGTAAGAGATGACTTTCCACAGCCATCCAGCATGGCACCCAGTGGGCA  1004

seq1  TGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTA  1099
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TGAAGTGCATCCTGAATCCATGCAGCTGCTCTTCCAAACGTAACTGGCTA  1054

seq1  GTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCATGAACACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCT  1104

seq1  GGTGAATTC  1158
      |||||||||
seq2  GGTGAATTC  1113