BAC Information

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BAC

Clone NameB6Ng01-056M01
Chromosome12 (Build37)5 (Build37)
Map Location 32,631,616 - 32,631,84695,127,756 - 95,127,912
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M01.bB6Ng01-056M01.g
ACCDH878816DH878817
length492370
definitionDH878816|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M01, 5' end.DH878817|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(95,127,756 - 95,127,912)
sequence
tttgttttttaatggggttaaacatgtaactccatggaaggagttacaga
gacaaaatttggagctgagatgaaaggatggaccatctagagactgctat
acttggggatacatcccataatcagcctccaaacgctgacatcattgcat
acactagcaagattttgctgaaaggacccagatatagctgtctcttgtga
ggctgtgccggggcctagcaaatacagaagtggatgctcacaatcagcta
ttggatggatcacagggcccccaatggaggagctagagaaagtacctaag
gagctagagggtctgcaaccctataggttgaacaacaatatgaactaacc
agtacccccccagagcttgtgtttctagctgcatatgtatcagaagatgg
cctagtcggccatcattggaaagagaggcccattggtcttgcaaacttta
tatgcttcagtacaggggaaccccagggccaagaagtgggag
ctcagtgtgcaaacaggtgtgtctctgtttcttgtaccttttattggact
cttttccttctgggttttgttttgtattattctgatttgtttgttttgtt
ttatcttagtatattttatttagtctaatattatctcttagatgcctgtc
tgctttatagagacagaaagggggtggatctggatgggagaagaggtagg
gaggaattctgttaactttaagggtatgttgataacagaagggaaagaaa
ctttgtagaaatggagggagataaggactaaaataaatataaccatgcct
atttatgtcttagggaaatgtctgactgaaacgtcattctttgttaaatt
gtcatgatctaattatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-056M01.b_259_536 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGGGTTCCCCTGTACTGAAGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| ||||||||||||||||| |||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTC--CGGGGGTACTGGTCAGTT  101
      ||||||||| ||||||||| |||| |||||   |||||||||||| ||||
seq2  TGATACATATGCAGCTAGAAACACAAGCTCTGGGGGGGTACTGGTTAGTT  150

seq1  CATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGT  151
      |||| |||||||| ||||||||||||||||| |||| ||||||||| |||
seq2  CATATTGTTGTTCAACCTATAGGGTTGCAGA-CCCTCTAGCTCCTTAGGT  199

seq1  ACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTG  201
      |||||||||| |||||||||||||| ||||||||||| ||||||||||||
seq2  ACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTG  248

seq1  ACTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      | ||||||||||||||||||| ||||||||
seq2  ATTGTGAGCATCCACTTCTGTATTTGCTAG  278

seq1: chr5_95127756_95127912
seq2: B6Ng01-056M01.g_285_441

seq1  AACTTTAAGGGTATGTTGATAACAGAAGGGAAAGAAACCATGTAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AACTTTAAGGGTATGTTGATAACAGAAGGGAAAGAAACTTTGTAGAAATG  50

seq1  GAGGGAGATAAGGACTAAAATAAATATAACCATGCCTATTTATGTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATAAGGACTAAAATAAATATAACCATGCCTATTTATGTCTTAG  100

seq1  GGAAATGTCTGACTGAAACAACATTCTTTGTAAAATTGACATGATCTAAT  150
      |||||||||||||||||||  |||||||||| |||||| |||||||||||
seq2  GGAAATGTCTGACTGAAACGTCATTCTTTGTTAAATTGTCATGATCTAAT  150

seq1  TATCAGT  157
      ||||| |
seq2  TATCATT  157