BAC Information

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BAC

Clone NameB6Ng01-057A22
Chromosome5 (Build37)12 (Build37)
Map Location 18,084,511 - 18,084,56835,947,302 - 35,948,246
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057A22.bB6Ng01-057A22.g
ACCDH879039DH879040
length1,058944
definitionDH879039|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A22, 5' end.DH879040|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,568)(35,947,302 - 35,948,246)
sequence
gaattctcaaccgaggaatatcaaatggctgagaagcacctaaagaaatg
ttcaagatccttagtcatcagggaaatgcaaatcaaaacaccctgatatc
tcacctcacaccagtcagaatttctaagatcaaaaactgaggttacagca
gatggtggccaggatgaggagacagaggaacactcttccactgctggtag
gattgcaagctggtgcaaccagtctgaaaatcagtttgacggttcatcag
aaaattggacatagtactacctgaggacccagctataccactcctggaca
actacccagaagatgctccaaattgtaataaggacacatgttccactatg
ttcatagcagctatatttataatagccagaagctggaaagaacgcagatg
tctctcaacagaggaatggatacagaaaatgtggtacatttacacagtga
agtactactcagctattaaaaacaatgagttcatgaaattcttaggcaaa
ttgatggaattagaaaatatcatcctgagtgaggtaacccaagcacaaaa
gaacacacatggtatacactcactgataagtggatattagcccagaagct
cagaataccgcagatacaattcacagaccaaatgaagatcaagaagaagg
aagattaaagtatccaagtatagatacttcagtctttcttagaagggaga
gcaaaatatccatgggaggagatgcagagacaaagtgtggagcagagact
gaaggaaagaccatccagagactgccccacctgaggatccatcccaaaca
ctgtcctcaaatgcagacactattgtggatgccaacaagtgatggttgac
aggagcctgatatagttgtctcttgagagactcagtgcctgacaatatag
aggtggatgctctcagccaaagattggactgagcacaagttctccaatgg
aggaactagagaaaggactgaaggagctgaagagcttgcagtcccataga
gaacaacaatatgaaccaccagtaccccagagctccacggactaacacaa
atcaagaa
gaattccaggacagggaagcaggagtaggtgggaataaccttcatagaag
cagaggtacaagggtgggataggtggcctttggggtgggggaggaactga
gagaggggataacatttgaaatggaaataagtaaaatatccaataaaaag
tttttaaaaaagatgaagatatagaactctcagttcctcctgtgctgtgc
ttgcctggatgttgccatgttcctgacatgatgatcatggactgaacctc
tgaatctataagccaaccccaattaaatgttgtccttataagagttgtct
tggtcacagcagtaaaaccctaattaatacagtggtttagttcctagctc
ccatgagtaattaatttttaatcttaccttgccacacaaccaaaaaataa
ggttcaatctagacttatacttcatgcccagccaaaataacatacaaaat
taactactacacaaggtcagttaagatgcataaacatgcaggagttaggc
taatgagtcaaagcagttgaccaatactgtggttggctaagaagatcaat
tcaaatcagttgaacactatgaggaaaggaaaacaaaagtagggcatttg
acagatggagttatggacactggctgctcttcccgagaaaacaagttcag
tttatcagtacctacgtggcagctcacaactccagtcctaaggtcttcaa
tgcttctggcttctgttggtaccaggcatgcaaatgatgcacaggcaaac
ctgcaggcaaaatattcacacatataacataatgatgttaagttgtggta
gtctcatcctagtctttatcttttgtagtcttcactatgggagtagttcg
atatttcaaggtgacacgggtttgcttaagatacaatcgctttttgaata
atgttatcatgggaattacttatttataatatacctaatatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084568
seq2: B6Ng01-057A22.b_373_430 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||  |||||||||||||||||||| ||||||||
seq2  CTTCTGGCTATTATAAATATAGCTGCTATGAACATAGTGGAACATGTGTC  50

seq1  CTTCTTAC  58
      ||| ||||
seq2  CTTATTAC  58

seq1: chr12_35947302_35948246
seq2: B6Ng01-057A22.g_71_1014

seq1  GAATTCCAGGACAGGGAAGCAGGAGTAGGTGGGAATAACCTTCATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGGAAGCAGGAGTAGGTGGGAATAACCTTCATAGAAG  50

seq1  CAGAGGTACAAGGGTGGGATAGGTGGCCTTTGGGGTGGGGGAGGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTACAAGGGTGGGATAGGTGGCCTTTGGGGTGGGGGAGGAACTGA  100

seq1  GAGAGGGGATAACATTTGAAATGGAAATAAGTAAAATATCCAATAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGATAACATTTGAAATGGAAATAAGTAAAATATCCAATAAAAAG  150

seq1  TTTTTAAAAAAGATGAAGATATAGAACTCTCAGTTCCTCCTGTGCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAGATGAAGATATAGAACTCTCAGTTCCTCCTGTGCTGTGC  200

seq1  TTGCCTGGATGTTGCCATGTTCCTGACATGATGATCATGGACTGAACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGATGTTGCCATGTTCCTGACATGATGATCATGGACTGAACCTC  250

seq1  TGAATCTATAAGCCAACCCCAATTAAATGTTGTCCTTATAAGAGTTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTATAAGCCAACCCCAATTAAATGTTGTCCTTATAAGAGTTGTCT  300

seq1  TGGTCACAGCAGTAAAACCCTAATTAATACAGTGGTTTAGTTCCTAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGCAGTAAAACCCTAATTAATACAGTGGTTTAGTTCCTAGCTC  350

seq1  CCATGAGTAATTAATTTTTAATCTTACCTTGCCACACAACCAAAAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTAATTAATTTTTAATCTTACCTTGCCACACAACCAAAAAATAA  400

seq1  GGTTCAATCTAGACTTATACTTCATGCCCAGCCAAAATAACATACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATCTAGACTTATACTTCATGCCCAGCCAAAATAACATACAAAAT  450

seq1  TAACTACTACACAAGGTCAGTTAAGATGCATAAACATGCAGGAGTTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTACACAAGGTCAGTTAAGATGCATAAACATGCAGGAGTTAGGC  500

seq1  TAATGAGTCAAAGCAGTTGACCAATACTGTGGTTGGCTAAGAAGATCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTCAAAGCAGTTGACCAATACTGTGGTTGGCTAAGAAGATCAAT  550

seq1  TCAAATCAGTTGAACACTATGAGGAAAGGAAAACAAAAGTAGGGCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGTTGAACACTATGAGGAAAGGAAAACAAAAGTAGGGCATTTG  600

seq1  ACAGATGGAGTTATGGACACTGGCTGCTCTTCCCGAG-AAACAAGTTCAG  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGATGGAGTTATGGACACTGGCTGCTCTTCCCGAGAAAACAAGTTCAG  650

seq1  -TTATCAGTACCTACGTGGCAGCTCACAACTCCAGTCCTAAGGTCTTCAA  698
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTACCTACGTGGCAGCTCACAACTCCAGTCCTAAGGTCTTCAA  700

seq1  TGCTTCTGGCTTCTGTTGGTACCAGGCATGCAAATGATGCACAGGCAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGGCTTCTGTTGGTACCAGGCATGCAAATGATGCACAGGCAAAC  750

seq1  CTGCAGGCAAAATATTCACACATATAACATAATGATGTTAAGTTGTGGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAAAATATTCACACATATAACATAATGATGTTAAGTTGTGGTA  800

seq1  GTCTCATCCTAGTCTTTTATCTTTTGTAGTCTTCACTATGGGAGTAGTTC  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTCATCCTAGTC-TTTATCTTTTGTAGTCTTCACTATGGGAGTAGTTC  849

seq1  GATATTTCAAGGTTGACAC-GGTTTGCTTAAGATTACAATCACTTTTTGA  897
      |||||||||||| |||||| ||||||||||||| ||||||| ||||||||
seq2  GATATTTCAAGG-TGACACGGGTTTGCTTAAGA-TACAATCGCTTTTTGA  897

seq1  ATAATGTTATCAT-GGAATTACTTATTTAATAATATAACTAACTATATT  945
      ||||||||||||| |||||||||||||| |||||||| |||| ||||||
seq2  ATAATGTTATCATGGGAATTACTTATTT-ATAATATACCTAA-TATATT  944