BAC Information

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BAC

Clone NameB6Ng01-057C16
Chromosome5 (Build37)
Map Location 31,866,255 - 31,867,233
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap
Downstream geneMrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057C16.bB6Ng01-057C16.g
ACCDH879116DH879117
length1,149970
definitionDH879116|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C16, 5' end.DH879117|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcagcatccttattcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctta
gaaaactggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaaggacacatgctccactatgtt
cataacagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacaaaaaggtggtacatttacacaatggatt
actactcagctattaaaaagaatgaatttaagaaattcctaggcaaatgg
ttggacctggagggcatcatcctgagtaggtaacccaatcacaaaagaac
tcacaggatatgttctcactgataagtggatattagcccagaaacttaga
atacccaagatataagatacaattcgcaaaacacatgaaactcaagaaga
acgaagaccaaagtgtggacactttgccccttcttagaattgggaacaaa
acacccatgaaggagttacagagacaaagtttggagctgagacaaaagga
tggaccatctagagactgccatatccagggacccatcccatagtcagcct
ccaaacgatgacaccattgcatacactagcaagattttgctgaaagtacc
ctgatacagctgtctcttgtgagactatgccggggcctagcaaacacaga
agtggatgctcacagtcagctattggatggtcccaaatggagagctagag
aaagtacccatgagctaaagggaactgcaaccctatagtggaacaacaat
atgactaaccagtaccccagagctcttgtctctagctgcatatgtatcaa
agaagggctatcgcctcgtaaaagaaggtccattggacatgcacctttat
atgaccagtcagggacggcagagccaaattgaatgtgggtatgagagac
gaattccataccccactctacagaggcggaggagaaggtgaacagttcag
cgttccgttgcttaggcagactcaggcttgcaattattttgtcaatagtt
ttgttacatcttcctgctttaccagagtttcttaaaacttgactttggga
accttaaacttcctactctttgccttgctgtctaccaacaacagttttga
gccacggtctcacatatactaggctggccacagactccctattaaccaag
aatcctcctgtatctatgtcctgggtactgcgattaggtgtgtgctacaa
tgttcccagggctttgtgtgcacctggctggcacctggctgtcaccacct
gagcaagctatagtttccagccctgctcttaactggacccacactgaaag
ttaactttgggagcaggggatgggaatggctcagcatggaagagggcttg
ctcgataagcatgaggacccaggtttgaacccctagatggacacagctcc
atgtgcctgtatttccagcattgggaggggcggggaattggggcaggaac
gaacagatctagagagctcaatggccagtcagcttgcccaaaacagggtt
tctggtttagcgaggcaaactaggtgtgtcttcaaaagtcactagtttcc
aatctgtttccttcaacatcaatgacagccatgccctttttgccactcaa
gtacgacagaggacagatctggggaaggagaggtgtgagaatcctctgta
accataaagttgaagagcactatgggatggcccaaatctcccactgactg
ttctccctgtgactggcgaatgactctcaaggagaaaacaagggcagaaa
cgatgggttggaaagagatttggggagcagcctctggttgggagaaggga
ttggggcacagctgttggacctggctaatcccgggctagcgcgctgctca
gttcagttggaaagacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31866255_31867233
seq2: B6Ng01-057C16.g_68_1037 (reverse)

seq1  CAGTGTCTTTCCAAACCTGACACCTGAAGCAGCGCGCTAGCCCGGGGACT  50
      ||||||||||||||  |||  | ||| |||||||||||||||||||   |
seq2  CAGTGTCTTTCCAA--CTG--AACTG-AGCAGCGCGCTAGCCCGGG--AT  43

seq1  TAGCCAAGGTCCAACAGCTGTGCCCCAAATCCCTCT-CCAACCAGAGGCT  99
      ||||| ||||||||||||||||||||||  || ||| |||||||||||||
seq2  TAGCC-AGGTCCAACAGCTGTGCCCCAATCCCTTCTCCCAACCAGAGGCT  92

seq1  GCTCCCCAAATCTCTTTCCAACCCATCGTTTCTGCCCTTGTTTTCTCCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAAATCTCTTTCCAACCCATCGTTTCTGCCCTTGTTTTCTCCTT  142

seq1  GAGAGTCATTCGCCAGTCACAGGGAGAACAGTCAGTGGGAGATTTGGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCATTCGCCAGTCACAGGGAGAACAGTCAGTGGGAGATTTGGGCC  192

seq1  ATCCCATAGTGCTCTTACAACTTTATGGTTTACAGAGGATTCTCACACCT  249
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ATCCCATAGTGCTCTT-CAACTTTATGG-TTACAGAGGATTCTCACACCT  240

seq1  CTCCTTCCCCAGATCTGTCCTCTGTCGTACTTGAGTGGCAAAAAGGGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCCCAGATCTGTCCTCTGTCGTACTTGAGTGGCAAAAAGGGCAT  290

seq1  GGCTGTCATTGATGTTGAAGGAAACAGATTGGAAACTAGTGACTTTTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCATTGATGTTGAAGGAAACAGATTGGAAACTAGTGACTTTTGAA  340

seq1  GACACACCTAGTTTGCCTCGCTAAACCAGAAACCCTGTTTTGGGCAAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCTAGTTTGCCTCGCTAAACCAGAAACCCTGTTTTGGGCAAGCT  390

seq1  GACTGGCCATTGAGCTCTCTAGATCTGTTCGTTCCTGCCCCAATTCCCCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCATTGAGCTCTCTAGATCTGTTCGTTCCTGCCCCAATTCCCCG  440

seq1  CCCCTCCCAATGCTGGAAATACAGGCACATGGAGCTGTGTCCATCTAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAATGCTGGAAATACAGGCACATGGAGCTGTGTCCATCTAGGG  490

seq1  GTTCAAACCTGGGTCCTCATGCTTATCGAGCAAGCCCTCTTCCATGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACCTGGGTCCTCATGCTTATCGAGCAAGCCCTCTTCCATGCTGA  540

seq1  GCCATTCCCATCCCCTGCTCCCAAAGTTAACTTTCAGTGTGGGTCCAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCATCCCCTGCTCCCAAAGTTAACTTTCAGTGTGGGTCCAGTT  590

seq1  AAGAGCAGGGCTGGAAACTATAGCTTGCTCAGGTGGTGACAGCCAGGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGGCTGGAAACTATAGCTTGCTCAGGTGGTGACAGCCAGGTGC  640

seq1  CAGCCAGGTGCACACAAAGCCCTGGGAACATTGTAGCACACACCTAATCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGTGCACACAAAGCCCTGGGAACATTGTAGCACACACCTAATCG  690

seq1  CAGTACCCAGGACATAGATACAGGAGGATTCTTGGTTAATAGGGAGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCAGGACATAGATACAGGAGGATTCTTGGTTAATAGGGAGTCTG  740

seq1  TGGCCAGCCTAGTATATGTGAGACCGTGGCTCAAAACTGTTGTTGGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCTAGTATATGTGAGACCGTGGCTCAAAACTGTTGTTGGTAGA  790

seq1  CAGCAAGGCAAAGAGTAGGAAGTTTAAGGTTCCCAAAGTCAAGTTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCAAAGAGTAGGAAGTTTAAGGTTCCCAAAGTCAAGTTTTAAG  840

seq1  AAACTCTGGTAAAGCAGGAAGATGTAACAAAACTATTGACAAAATAATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGGTAAAGCAGGAAGATGTAACAAAACTATTGACAAAATAATTG  890

seq1  CAAGCCTGAGTCTGCCTAAGCAACGGAACGCTGAACTGTTCACCTTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAGTCTGCCTAAGCAACGGAACGCTGAACTGTTCACCTTCTCC  940

seq1  TCCGCCTCTGTAGAGTGGGGTATGGAATTC  979
      ||||||||||||||||||||||||||||||
seq2  TCCGCCTCTGTAGAGTGGGGTATGGAATTC  970