BAC Information

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BAC

Clone NameB6Ng01-058E21
Chromosome5 (Build37)5 (Build37)
Map Location 108,476,361 - 108,476,95431,104,902 - 31,106,245
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik
Downstream geneLOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E21.bB6Ng01-058E21.g
ACCDH879919DH879920
length9251,095
definitionDH879919|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E21, 5' end.DH879920|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,476,361 - 108,476,954)(31,104,902 - 31,106,245)
sequence
gaattcctctccatttccccataaacacagggtctctctatatgacgctg
gcttgcctgggccttactctatagacccaggctcgttttgaactcacgga
gatccagctgattctgctacctgagtgcaccaccatgcctagctcctcca
tggcttgtggttgcggagctgacacagtgtaacagtggagcaggtcctgc
tccatcttcaagaggatccaatggggccagccaagggcatgtcttctgag
attatagcctttgtcccagacttccctaccacatgcttcatattcacacg
caggaccataaagaagcaagtcccatacaatcttaattctggggatcagt
caccagtgtcagtggggttctgggagcctttaagaagcttggtagatctc
acattttacatttatttatttttatttattattattatatgtaagtacac
tgtagctgtcttcagacactccagaagagggcatcagatttcattatgga
tggttgtgagccaccatgtggttgtgggatttgaactcgggacctttgaa
agagcagtcggcgctcttaaccactgagccatctctccagccccccttac
atttatttttaattaaaattttgtttgtttgtttgttttttgaggcaagt
ttcctgactgtcctgtaagtctctctgtagaccaggatggcctcgaagtc
aaagacctacttgccccttcctcccaagttctgggactaaaggtgtgtac
caccactgcttgactaatgaaaattttacttttacttgtattctgtgtgg
atgggtgttttgcctacatgtatgtctgtgcagcagcacatgtgtgtctg
atgcccatggaggctggaagagtcatcagatccctggaactagagttata
gacagttgtggctaccatgtgggtg
gaattcttcattgcaaactggtttgagtgttgcagattgggggccctgga
gtgctccccacccccgcagcaccagattgccatatttccaggcactgagg
agtcaacatcacaaacagacttttgggaaaggctttgacaccttcatgac
tggggaactgaaactactgggaaaggattgaccgggttttgagtgttttg
agtcccaaggacgacacttcagtaatgctgccttaatgccatggcagtga
tcatcagaattcctggtggctcctaagaggaacttgaggcccgctctagt
catcttagtctgttgccatgtgggggctgctgttgatcaacagccaggtc
tccagagtaaactatctgcgacgtggcccaaggagtggctttctgcagat
tgctctgtgatttctccctgctgtctgcactgtggttgcgaaactcctgg
gaattggtagcgggggcataaaagaatgctgccttccattctgtttctca
gatactgctttcatctgtcatcgtgtttaggaaaactggtatcccaattc
caatctataatcaaagccaatactttggggattaatggtttaacctaagt
gagcaaagtggggctcccttctagactggaggtctgaagttgttcatgga
gcccagtggctctcagccaggggcagttttgtcctctaggagacaagagt
aggaaatctttggacattcttttggctgtcacaacgtagcagactagcac
tacttgaatctattggatagagttccaggaccctgccaagccatctactc
gggatgcattcgggggagccactgcaacaaggaattcttccacacaaatg
tcaacagcgatgagatgtggagatatctgagacacagcttgataatctgt
gtgaagcttaaagatggaatgggatcgttgctttagaaaattgtataagg
aagttttaaggagggaggcagagctaagttatgatgcaattctttgtggg
caagacattcaggagcaaacatcacggcacgggttgacctcagatccagg
gatcagtctaaggcaggacccaggagtttacccgtgctctccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108476361_108476954
seq2: B6Ng01-058E21.b_477_738 (reverse)

seq1  AGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCCATGGCTATACAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAATCCTGTCTGTCTCAAAAAACAAAAAAAACAAACAAACAAAAAAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTATTTATTTCCTGTATGTGAGTACACTGTCACTGTCTTCAGGCACGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAAGAGGGAATGAGATCCCATTACAGATGGTTGTGAGTCGCTATGTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTGGGAATTAAACTCAGAACCTCTGGAAGAACAGTCAGTGCTCTTAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CGCTGAGCCATCTCTCCGGCCCCATGATCCCAGCACTTGAGAGACAGACA  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAACCTCCCTGCAAGTTCAAGGCAAGCCTGATCCATTTA-AGATTGTC  349
                           |||| | |||| || |   | ||| |  |
seq2  ---------------------AGGCCATCCTGGTCTACAGAGAGACTTAC  29

seq1  AGGTTGGTCAGTACCACAGAATAAGGCCTTGCCTCCTAAAATAAAATAAT  399
      |||   |||||       |||      ||||||| | ||||  ||| || 
seq2  AGGACAGTCAG-------GAA-----ACTTGCCT-CAAAAAACAAACAAA  66

seq1  AAAATAAAATACTATTT--AAATACTTCTCTTGGGGGCTGGTGAGATGGC  447
       ||| |||||  || ||  |||||  | |   ||||||||| ||||||||
seq2  CAAACAAAATTTTAATTAAAAATAAATGTAAGGGGGGCTGGAGAGATGGC  116

seq1  TCAGTGGTTAAGAGCGCCAACTGCTCTTCCAAAGGTCCTGAGTTCAAATC  497
      |||||||||||||||||| ||||||||| ||||||||| |||||||||||
seq2  TCAGTGGTTAAGAGCGCCGACTGCTCTTTCAAAGGTCCCGAGTTCAAATC  166

seq1  CCAGCAACCACATGGTGGCTCACAACCATTCATAACGAAATCTGATGCCA  547
      ||| ||||||||||||||||||||||||| ||||| ||||||||||||| 
seq2  CCA-CAACCACATGGTGGCTCACAACCATCCATAATGAAATCTGATGCCC  215

seq1  TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  594
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  262

seq1: chr5_31104902_31106245
seq2: B6Ng01-058E21.g_67_1161

seq1  GAATTCTTCATTGCAAACTGGTTTGAGTGTTGCAGATTGGGGGCCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTGCAAACTGGTTTGAGTGTTGCAGATTGGGGGCCCTGGA  50

seq1  GTGCTCCCCACCCCCGCAGCACCAGATTGCCATATTTCCAGGCACTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCCACCCCCGCAGCACCAGATTGCCATATTTCCAGGCACTGAGG  100

seq1  AGTCAACATCACAAACAGACTTTTGGGAAAGGCTTTGACACCTTCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACATCACAAACAGACTTTTGGGAAAGGCTTTGACACCTTCATGAC  150

seq1  TGGGGAACTGAAACTACTGGGAAAGGATTGACCGGGTTTTGAGTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACTGAAACTACTGGGAAAGGATTGACCGGGTTTTGAGTGTTTTG  200

seq1  AGTCCCAAGGACGACACTTCAGTAATGCTGCCTTAATGCCATGGCAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGGACGACACTTCAGTAATGCTGCCTTAATGCCATGGCAGTGA  250

seq1  TCATCAGAATTCCTGGTGGCTCCTAAGAGGAACTTGAGGCCCGCTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAATTCCTGGTGGCTCCTAAGAGGAACTTGAGGCCCGCTCTAGT  300

seq1  CATCTTAGTCTGTTGCCATGTGGGGGCTGCTGTTGATCAACAGCCAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGTCTGTTGCCATGTGGGGGCTGCTGTTGATCAACAGCCAGGTC  350

seq1  TCCAGAGTAAACTATCTGCGACGTGGCCCAAGGAGTGGCTTTCTGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTAAACTATCTGCGACGTGGCCCAAGGAGTGGCTTTCTGCAGAT  400

seq1  TGCTCTGTGATTTCTCCCTGCTGTCTGCACTGTGGTTGCGAAACTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGATTTCTCCCTGCTGTCTGCACTGTGGTTGCGAAACTCCTGG  450

seq1  GAATTGGTAGCGGGGGCATAAAAGAATGCTGCCTTCCATTCTGTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTAGCGGGGGCATAAAAGAATGCTGCCTTCCATTCTGTTTCTCA  500

seq1  GATACTGCTTTCATCTGTCATCGTGTTTAGGAAAACTGGTATCCCAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGCTTTCATCTGTCATCGTGTTTAGGAAAACTGGTATCCCAATTC  550

seq1  CAATCTATAATCAAAGCCAATACTTTGGGGATTAATGGTTTAACCTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATAATCAAAGCCAATACTTTGGGGATTAATGGTTTAACCTAAGT  600

seq1  GAGCAAAGTGGGGCTCCCTTCTAGACTGGAGGTCTGAAGTTGTTCATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGTGGGGCTCCCTTCTAGACTGGAGGTCTGAAGTTGTTCATGGA  650

seq1  GCCCAGTGGCTCTCAGCCAGGGGCAGTTTTGTCCTCTAGGAGACAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGGCTCTCAGCCAGGGGCAGTTTTGTCCTCTAGGAGACAAGAGT  700

seq1  AGGAAATCTTTGGACATTCTTTTGGCTGTCACAACGTAGCAGACTAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTTTGGACATTCTTTTGGCTGTCACAACGTAGCAGACTAGCAC  750

seq1  TACTTGAATCTATTGGATAGAGTTCCAGGACCCTGCCAAGCCATCTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATCTATTGGATAGAGTTCCAGGACCCTGCCAAGCCATCTACTC  800

seq1  GGGATGCATTCGGGGGAGCCACTGCAACAAGGAATTCTTCCACACAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGATGCATTCGGGGGAGCCACTGCAACAAGGAATTCTTCCACAC-AAAT  849

seq1  GTCAACAGCGATGAGATGTGGAGATATCTGAGAACACAGCTTGATAAATC  900
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GTCAACAGCGATGAGATGTGGAGATATCTGAG-ACACAGCTTGAT-AATC  897

seq1  TGTGTGAAGCTTAAAGATGGAATGGGATCGTTGCTTTAGAAAATTGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAGCTTAAAGATGGAATGGGATCGTTGCTTTAGAAAATTGTATA  947

seq1  AGGAAGTTTTAAGGAGGGAGGCAGAGCTAAGTTTATGATGCAATTCTGTG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AGGAAGTTTTAAGGAGGGAGGCAGAGCTAAG-TTATGATGCAATTCTTTG  996

seq1  T-GGCAAGACATTCAGGATGCAAAACATCAC-GCACAGGGTTGGACCTCA  1048
      | |||||||||||||||| || ||||||||| |||| ||||| |||||||
seq2  TGGGCAAGACATTCAGGA-GC-AAACATCACGGCAC-GGGTT-GACCTCA  1042

seq1  GCATCCCAGGATCAGTCAAAGGCAGGACCCCAAGGAGTCTTACCACGTGC  1098
      | ||||  ||||||||| ||||||||||||  |||||| ||||| |||||
seq2  G-ATCCAGGGATCAGTCTAAGGCAGGACCC--AGGAGT-TTACC-CGTGC  1087

seq1  TTCCCATGGCTTCACCTGTCAATCCAATGCCACCGAGATCAGGAACTGTG  1148
      |  ||| |                                          
seq2  TCTCCAGG------------------------------------------  1095

seq1  TTGTACCAGGTCCTGCTTGGCCACTGTGAAATGCTCCAGGAAACAGATGG  1198
                                                        
seq2  --------------------------------------------------  1095

seq1  CCACTTGTAGATCTGACTGAAGTTCAAAATGCAGACAGAGGGGCCACAGC  1248
                                                        
seq2  --------------------------------------------------  1095

seq1  AAGTAGAAGCCTAATCACTGTTACACTTCAATTCTTTAATTATCAAATAT  1298
                                                        
seq2  --------------------------------------------------  1095

seq1  ATAGCCTTTCTGTTATACCTGGGTGTAAACTAAGCCCCTCTCCAGG  1344
                                                    
seq2  ----------------------------------------------  1095