BAC Information

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BAC

Clone NameB6Ng01-058F16
Chromosome5 (Build37)
Map Location 7,968,131 - 8,112,444
singlet/doubletdoublet
Overlap geneSteap4, Sri, LOC433840, Adam22
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855
Downstream geneDbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058F16.bB6Ng01-058F16.g
ACCDH879957DH879958
length1,128783
definitionDH879957|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F16, 5' end.DH879958|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,968,131 - 7,969,267)(8,111,663 - 8,112,444)
sequence
gaattctcaaatggagaaaaaggcagcatgactctaaaggctgtttcaag
taaatgactaaccagccacggtgctttgctgtgtgttgctcttaaagaac
tccgtgggagacttgggtggttttctagggttgggtagcagctctctgta
atatttccttgacagaaatacagagaaaagctacgtgcagtctgaggccg
agtcttgagtctgacattcttggactctgtcccttgtgagctgtgcacac
tcaggcctcattcagcctttggatttcctcataaagagaggaattctagc
cttcagtcaagactacagggaaaacttgtgaagaaggtgaaatgtgtcaa
gagtcgctcagtttttgtgcaagctctcaacctgatgtgaatgtgccact
gggccagagacataatacttcatagagtaacactttacagaagtgtgtgt
ttctccacaatccttaatgatcccaagaaatcttccatgactgaagtcag
gaaagtgtgatgcctgtctgtactccagaggcagcctctcctcctcactc
caccaagatctctctgagtgggtcctctctgcccacctatgagcaggccc
atgacactacttcctgaaacaaaaagttgtgtgttgtgtcaacagtaatt
ttctcttgagattttctttgatcacctccaagctttttcatatgaaattt
atttttgcatttttactttgcataaaaacataaaattgggttagttaata
agtacgccgactctagctgtgtgtaaataactgacagccggtgtttatgt
aaataatttgaattttctttgatttttttagaattaaagatgacagagaa
aatcatggtggctactcacttttaaaattatgtgtgccaaacaggagaca
ttttctttcttttctactctagaaatgccattacatatataaatattaca
tttttcctttttatctacaaccttggggatgaaacaaatgcccattttct
aatctcaggatgagaaaataccatgtttggaagaagccatgattagggtc
attgacatgctttctaaaggactgtgacaaagaccttcctccctaagtac
tgaccggtaaatggccatttgaagccag
gaattctggagttctgagaactggcacggcctctggggtacccatatggc
ctctgaggtttcagatgctggcatagcctccaggagagccggagtctcct
gccagagttgtggcccaggatatggagccaagggtgtgggttgctgttgg
ggacagctgggtgggctctaagaagtgttagtggaaggtggacagtattt
tacaggttggggtgtttcttgtagatcagacctcagtagctttttaaaag
acattctttagaagtagtcgttcaagtttattgatccttgtgtaaatcca
agaacagaaagggtggatagacatgctaagtcttggtttgaaaaaagcca
aagcctttttacaaaacaggtgatattgtcagcatgattacagacgtaga
gaagaaaattaccacaagaatgtcatatcactgattttccttcttgtctt
cccttctaggtgttgctggcactaatatcataataggaataattgccggc
accattttagtgctggccctcatcttaggaataactgcctggggttataa
gtaagttaaatatttcagtagtattactttcaaaatgcaccataaatttt
tattaagacctggagaggtggctcagtgtgtaaaagtggcaagtgctctt
ggagacggctcattttcaattcctagtaccattgttgggtaatgcctaaa
cacatatacctctacttccaggggatctgacaccatctgctatcctattt
tatatatctgtgctcaaatatgtatgtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7968131_7969267
seq2: B6Ng01-058F16.b_47_1174

seq1  GAATTCTCAAATGGAGAAAAAGGCAGCATGACTCTAAAGGCTGTTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATGGAGAAAAAGGCAGCATGACTCTAAAGGCTGTTTCAAG  50

seq1  TAAATGACTAACCAGCCACGGTGCTTTGCTGTGTGTTGCTCTTAAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACTAACCAGCCACGGTGCTTTGCTGTGTGTTGCTCTTAAAGAAC  100

seq1  TCCGTGGGAGACTTGGGTGGTTTTCTAGGGTTGGGTAGCAGCTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGGAGACTTGGGTGGTTTTCTAGGGTTGGGTAGCAGCTCTCTGTA  150

seq1  ATATTTCCTTGACAGAAATACAGAGAAAAGCTACGTGCAGTCTGAGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTGACAGAAATACAGAGAAAAGCTACGTGCAGTCTGAGGCCG  200

seq1  AGTCTTGAGTCTGACATTCTTGGACTCTGTCCCTTGTGAGCTGTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAGTCTGACATTCTTGGACTCTGTCCCTTGTGAGCTGTGCACAC  250

seq1  TCAGGCCTCATTCAGCCTTTGGATTTCCTCATAAAGAGAGGAATTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCATTCAGCCTTTGGATTTCCTCATAAAGAGAGGAATTCTAGC  300

seq1  CTTCAGTCAAGACTACAGGGAAAACTTGTGAAGAAGGTGAAATGTGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCAAGACTACAGGGAAAACTTGTGAAGAAGGTGAAATGTGTCAA  350

seq1  GAGTCGCTCAGTTTTTGTGCAAGCTCTCAACCTGATGTGAATGTGCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGCTCAGTTTTTGTGCAAGCTCTCAACCTGATGTGAATGTGCCACT  400

seq1  GGGCCAGAGACATAATACTTCATAGAGTAACACTTTACAGAAGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGACATAATACTTCATAGAGTAACACTTTACAGAAGTGTGTGT  450

seq1  TTCTCCACAATCCTTAATGATCCCAAGAAATCTTCCATGACTGAAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACAATCCTTAATGATCCCAAGAAATCTTCCATGACTGAAGTCAG  500

seq1  GAAAGTGTGATGCCTGTCTGTACTCCAGAGGCAGCCTCTCCTCCTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTGATGCCTGTCTGTACTCCAGAGGCAGCCTCTCCTCCTCACTC  550

seq1  CACCAAGATCTCTCTGAGTGGGTCCTCTCTGCCCACCTATGAGCAGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGATCTCTCTGAGTGGGTCCTCTCTGCCCACCTATGAGCAGGCCC  600

seq1  ATGACACTACTTCCTGAAACAAAAAGTTGTGTGTTGTGTCAACAGTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTACTTCCTGAAACAAAAAGTTGTGTGTTGTGTCAACAGTAATT  650

seq1  TTCTCTTGAGATTTTCTTTGATCACCTCCAAGCTTTTTCATATGAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAGATTTTCTTTGATCACCTCCAAGCTTTTTCATATGAAATTT  700

seq1  ATTTTTGCATTTTTACTTTGCATAAAAACATAAAATTGGGTTAGTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCATTTTTACTTTGCATAAAAACATAAAATTGGGTTAGTTAATA  750

seq1  AGTACGCCGACTCTAGCTGTGTGTAAATAACTGACAGCCGGTGTTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGCCGACTCTAGCTGTGTGTAAATAACTGACAGCCGGTGTTTATGT  800

seq1  AAATAATTTGAATTTTCTTTGATTTTTTTAGAATTAAAGATGACAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTGAATTTTCTTTGATTTTTTTAGAATTAAAGATGACAGAGAA  850

seq1  AATCATGGTGGCTACTCACTTTTAAAATTATGTGTGCCAAACAGGAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGTGGCTACTCACTTTTAAAATTATGTGTGCCAAACAGGAGACA  900

seq1  TTTTCTTTCTTTTCTACTCTAGAAATGCCATTACATATATAAATATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTCTTTCTTTTCTACTCTAGAAATGCCATTACATATATAAATA-TTAC  949

seq1  ATTTTTTCCCTCTTTATTCTACAAACCTTGGGGATGAAACAAATGGCCCA  1000
      ||||||  ||| |||| ||||| ||||||||||||||||||||| |||||
seq2  ATTTTT--CCTTTTTA-TCTAC-AACCTTGGGGATGAAACAAAT-GCCCA  994

seq1  TTTTCTAATCTCAGGATGAGAAAATACCATGTTTTGGAAG-AGCCATGAT  1049
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TTTTCTAATCTCAGGATGAGAAAATACCATG-TTTGGAAGAAGCCATGAT  1043

seq1  TA-GGTCATTGACATGCTTACTAAAGGAC-CTGACAAAGACATTCTCCCC  1097
      || |||||||||||||||| |||||||||  |||||||||| |||  |||
seq2  TAGGGTCATTGACATGCTTTCTAAAGGACTGTGACAAAGACCTTCCTCCC  1093

seq1  TAAGGTACTGACCGTGGTAAAATGTGCCATTTGATGCCAG  1137
      ||| |||||||||  ||| ||||| ||||||||| |||||
seq2  TAA-GTACTGACC--GGT-AAATG-GCCATTTGAAGCCAG  1128

seq1: chr5_8111663_8112444
seq2: B6Ng01-058F16.g_69_851 (reverse)

seq1  GCACACACATACATATTTGAGCACAGATATAT-AAATAGGATAGCAGATG  49
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCACACACATACATATTTGAGCACAGATATATAAAATAGGATAGCAGATG  50

seq1  GTGTCAGATCCCCTGGAAGTAGAGGTATATGTGTTTAGGCATTACCCAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGATCCCCTGGAAGTAGAGGTATATGTGTTTAGGCATTACCCAAC  100

seq1  AATGGTACTAGGAATTGAAAATGAGCCGTCTCCAAGAGCACTTGCCACTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACTAGGAATTGAAAATGAGCCGTCTCCAAGAGCACTTGCCACTT  150

seq1  TTACACACTGAGCCACCTCTCCAGGTCTTAATAAAAATTTATGGTGCATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTGAGCCACCTCTCCAGGTCTTAATAAAAATTTATGGTGCATT  200

seq1  TTGAAAGTAATACTACTGAAATATTTAACTTACTTATAACCCCAGGCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTAATACTACTGAAATATTTAACTTACTTATAACCCCAGGCAGT  250

seq1  TATTCCTAAGATGAGGGCCAGCACTAAAATGGTGCCGGCAATTATTCCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAAGATGAGGGCCAGCACTAAAATGGTGCCGGCAATTATTCCTA  300

seq1  TTATGATATTAGTGCCAGCAACACCTAGAAGGGAAGACAAGAAGGAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATATTAGTGCCAGCAACACCTAGAAGGGAAGACAAGAAGGAAAAT  350

seq1  CAGTGATATGACATTCTTGTGGTAATTTTCTTCTCTACGTCTGTAATCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATATGACATTCTTGTGGTAATTTTCTTCTCTACGTCTGTAATCAT  400

seq1  GCTGACAATATCACCTGTTTTGTAAAAAGGCTTTGGCTTTTTTCAAACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAATATCACCTGTTTTGTAAAAAGGCTTTGGCTTTTTTCAAACCA  450

seq1  AGACTTAGCATGTCTATCCACCCTTTCTGTTCTTGGATTTACACAAGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGCATGTCTATCCACCCTTTCTGTTCTTGGATTTACACAAGGAT  500

seq1  CAATAAACTTGAACGACTACTTCTAAAGAATGTCTTTTAAAAAGCTACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTTGAACGACTACTTCTAAAGAATGTCTTTTAAAAAGCTACTG  550

seq1  AGGTCTGATCTACAAGAAACACCCCAACCTGTAAAATACTGTCCACCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGATCTACAAGAAACACCCCAACCTGTAAAATACTGTCCACCTTC  600

seq1  CACTAACACTTCTTAGAGCCCACCCAGCTGTCCCCAACAGCAACCCACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACACTTCTTAGAGCCCACCCAGCTGTCCCCAACAGCAACCCACAC  650

seq1  CCTTGGCTCCATATCCTGGGCCACAACTCTGGCAGGAGACTCCGGCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTCCATATCCTGGGCCACAACTCTGGCAGGAGACTCCGGCTCTC  700

seq1  CTGGAGGCTATGCCAGCATCTGAAACCTCAGAGGCCATATGGGTACCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCTATGCCAGCATCTGAAACCTCAGAGGCCATATGGGTACCCCA  750

seq1  GAGGCCGTGCCAGTTCTCAGAACTCCAGAATTC  782
      |||||||||||||||||||||||||||||||||
seq2  GAGGCCGTGCCAGTTCTCAGAACTCCAGAATTC  783