BAC Information

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BAC

Clone NameB6Ng01-058H17
Chromosome5 (Build37)
Map Location 40,987,510 - 41,111,486
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058H17.bB6Ng01-058H17.g
ACCDH880047DH880048
length1,143518
definitionDH880047|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H17, 5' end.DH880048|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,110,449 - 41,111,486)(40,987,510 - 40,988,033)
sequence
gaattcaaaaaggaaagttattgataaatcctcccgcttcttagaaatgc
ctaagtggtgagggacaaaactctggaagaaatgtggcacattatcctaa
ggcctcagaaataaggagcataatattaacattttgcttctaagtctagc
ttgttactgctgagccatctctccagcctgaggaacataatattgaataa
gagagagaggtcactttgttataaagtacaagaaattttgtatatgattt
ttcattatctatagtcttatagagggtagagtatgagagcaaagaaatag
ggtatctactggtgagccatttgccaagcaaagtgcttagagtgtgattt
gatttcaacctgctactaatagtattttaaaagattatttgaagacagaa
ctaacattaactttttaattaaaaagaaagcaagcgtcttatataaatat
ttgtaaaaatgtcagcttatcaattttgtaaaagtgagcattgctctgga
gagaccacagagggtgttgtataatgattataaaacatccgttaaaaaag
ttgccaaggaggtcttatttttctaagacaacagaagaatgatcctaaag
agaatgcagtcacaagagctactatggaaagtataaaactagagctttgg
aagtcactgcaaaaaatcaattagtgcaatcccatgtgcaagcatagggc
acagctggcacagaattccatcccagggaactcagggcgtatatcttggg
aattaagcactgcttagtctgtttcctgtaaagacatgttactctgctaa
ttaagtctactactgtccagatagcctttgggactcagcacaaatcagag
gactctctttattagcagggcttccccttctttgaccttaaccaccacgt
acctcttacctgaagaatgtcacacagccttagtagattacaggttctcc
tccctgtctctaagaacccattcagctacggctaagattttgaaatgcct
ccccatgctaatggaggcatctctctctctcagccaagacttttacccac
caattacactggggccttatggtagtgctttgcctatggtgcctaaagaa
acgaacatcaatcaaagagattcccggacctcagagacttaca
caaggaagatttactttggaaatagtaccctagcttactgttcaatgttt
tccttaaacagtcaactcagtctactcatttccaattcactactgtttaa
atattgtttcttgtctcttgttttatagacaaggctggaccagacttcat
tacatagttttaataagtattatgttagtaagagttctaatatccagaaa
gattccctattcccaaagtgaaatttttgggctgtgtcatgttataaaga
tcataaaatacccaaggagcttaaggtgtttgcagccccataggaggaac
atcaatatgaactatccagtacctctagagctcattgggactaaactacc
aatcaaagacaacacatggtgagacttgtggctctagatgcatatgtagc
agagattggcctagtcagtcctcaatgggaggagaggcccttggtcctgt
gaaggttctttgccccagtttagggaaatgctagggccaggaatgggagt
gggtggattggagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41110449_41111486
seq2: B6Ng01-058H17.b_161_1192 (reverse)

seq1  TGTAAGTCT-TGAGGTCCGGGAAACTCCTTTGAATGAATGTTCTGTTCTC  49
      ||||||||| ||||||||||||| || |||||| || ||||||  |||| 
seq2  TGTAAGTCTCTGAGGTCCGGGAATCT-CTTTGATTG-ATGTTCGTTTCTT  48

seq1  TAGGCA-CATAGGCAAAGCACTACCATAAGGGCACAGTGTAATTGGGTGG  98
      |||||| |||||||||||||||||||||||| | |||||||||| |||||
seq2  TAGGCACCATAGGCAAAGCACTACCATAAGGCCCCAGTGTAATT-GGTGG  97

seq1  GTAAAAGTCTTTGGCTGAAGAGAGAGAGATGCCT-CATTAGCATGGGGAG  147
      ||||||||| ||||||| |||||||||||||||| |||||||||||||||
seq2  GTAAAAGTC-TTGGCTG-AGAGAGAGAGATGCCTCCATTAGCATGGGGAG  145

seq1  GCATTTCAAAAATCTTAGGCGTTAGCTGAATGGGTTCTTAGAGACAGGGA  197
      ||||||| |||||||||| || ||||||||||||||||||||||||||||
seq2  GCATTTC-AAAATCTTAGCCG-TAGCTGAATGGGTTCTTAGAGACAGGGA  193

seq1  GGAGAACCTGTAATCTAACTAAGGCTGTGTGACATTCTTCAGGTAAGAGG  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAGAACCTGTAATCT-ACTAAGGCTGTGTGACATTCTTCAGGTAAGAGG  242

seq1  TACGTGGTGGTTAAGGTCAAAGAAGGGGAAGCCCTGCTAATAAAGAGAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGTGGTTAAGGTCAAAGAAGGGGAAGCCCTGCTAATAAAGAGAGT  292

seq1  CCTCTGATTTGTGCTGAGTCCCAAAGGCTATCTGGACAGTAGTAGACCTT  347
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCTGATTTGTGCTGAGTCCCAAAGGCTATCTGGACAGTAGTAGA-CTT  341

seq1  AATTAGCAGAGTAACATGTCTTTACAGGAAACAGACTAAGCAGTGCTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAGAGTAACATGTCTTTACAGGAAACAGACTAAGCAGTGCTTAA  391

seq1  TTCCCAAGATATACGCCCTGAGTTCCCTGGGATGGAATTCTGTGCCAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGATATACGCCCTGAGTTCCCTGGGATGGAATTCTGTGCCAGCT  441

seq1  GTGCCCTATGCTTGCACATGGGATTGCACTAATTGATTTTTTGCAGTGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTATGCTTGCACATGGGATTGCACTAATTGATTTTTTGCAGTGAC  491

seq1  TTCCAAAGCTCTAGTTTTATACTTTCCATAGTAGCTCTTGTGACTGCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGCTCTAGTTTTATACTTTCCATAGTAGCTCTTGTGACTGCATT  541

seq1  CTCTTTAGGATCATTCTTCTGTTGTCTTAGAAAAATAAGACCTCCTTGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGGATCATTCTTCTGTTGTCTTAGAAAAATAAGACCTCCTTGGC  591

seq1  AACTTTTTTAACGGATGTTTTATAATCATTATACAACACCCTCTGTGGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTAACGGATGTTTTATAATCATTATACAACACCCTCTGTGGTC  641

seq1  TCTCCAGAGCAATGCTCACTTTTACAAAATTGATAAGCTGACATTTTTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGCAATGCTCACTTTTACAAAATTGATAAGCTGACATTTTTAC  691

seq1  AAATATTTATATAAGACGCTTGCTTTCTTTTTAATTAAAAAGTTAATGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATATAAGACGCTTGCTTTCTTTTTAATTAAAAAGTTAATGTT  741

seq1  AGTTCTGTCTTCAAATAATCTTTTAAAATACTATTAGTAGCAGGTTGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTCTTCAAATAATCTTTTAAAATACTATTAGTAGCAGGTTGAAA  791

seq1  TCAAATCACACTCTAAGCACTTTGCTTGGCAAATGGCTCACCAGTAGATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCACACTCTAAGCACTTTGCTTGGCAAATGGCTCACCAGTAGATA  841

seq1  CCCTATTTCTTTGCTCTCATACTCTACCCTCTATAAGACTATAGATAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTCTTTGCTCTCATACTCTACCCTCTATAAGACTATAGATAATG  891

seq1  AAAAATCATATACAAAATTTCTTGTACTTTATAACAAAGTGACCTCTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATATACAAAATTTCTTGTACTTTATAACAAAGTGACCTCTCTC  941

seq1  TCTTATTCAATATTATGTTCCTCAGGCTGGAGAGATGGCTCAGCAGTAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCAATATTATGTTCCTCAGGCTGGAGAGATGGCTCAGCAGTAAC  991

seq1  AAGCTAGACTTAGAAGCAAAATGTTAATATTATGCTCCTTA  1038
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACTTAGAAGCAAAATGTTAATATTATGCTCCTTA  1032

seq1: chr5_40987510_40988033
seq2: B6Ng01-058H17.g_69_592

seq1  GAATTCCAAGGAAGATTTACTTTGGAAATAGTACCCTAGCTTACTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGATTTACTTTGGAAATAGTACCCTAGCTTACTGTTCA  50

seq1  ATGTTTTCCTTAAACAGTCAACTCAGTCTACTCATTTCCAATTCACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCCTTAAACAGTCAACTCAGTCTACTCATTTCCAATTCACTACT  100

seq1  GTTTAAATATTGTTTCTTGTCTCTTGTTTTATAGACAAGGCTGGACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATATTGTTTCTTGTCTCTTGTTTTATAGACAAGGCTGGACCAGA  150

seq1  CTTCATTACATAGTTTTAATAAGTATTATGTTAGTAAGAGTTCTAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTACATAGTTTTAATAAGTATTATGTTAGTAAGAGTTCTAATATC  200

seq1  CAGAAAGATTCCCTATTCCCAAAGTGAAATTTTTGGGCTGTGTCATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATTCCCTATTCCCAAAGTGAAATTTTTGGGCTGTGTCATGTTA  250

seq1  TAAAGATCATAAAATACCCAAGGAGCTTAAGGTGTTTGCAGCCCCATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCATAAAATACCCAAGGAGCTTAAGGTGTTTGCAGCCCCATAGG  300

seq1  AGGAACATCAATATGAACTATCCAGTACCTCTAGAGCTCATTGGGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATCAATATGAACTATCCAGTACCTCTAGAGCTCATTGGGACTAA  350

seq1  ACTACCAATCAAAGACAACACATGGTGAGACTTGTGGCTCTAGATGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAATCAAAGACAACACATGGTGAGACTTGTGGCTCTAGATGCATA  400

seq1  TGTAGCAGAGATTGGCCTAGTCAGTCCTCAATGGGAGGAGAGGCCCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAGATTGGCCTAGTCAGTCCTCAATGGGAGGAGAGGCCCTTGG  450

seq1  TCCTGTGAAGGTTCTTTGCCCCAGTTTAGGGAAATGCTAGGGCCAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAAGGTTCTTTGCCCCAGTTTAGGGAAATGCTAGGGCCAGGAAT  500

seq1  GGGAGTGGGTGGATTGGAGAGGAA  524
      ||||||||||||||||||||||||
seq2  GGGAGTGGGTGGATTGGAGAGGAA  524