BAC Information

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BAC

Clone NameB6Ng01-058M06
Chromosome5 (Build37)
Map Location 65,275,436 - 65,404,183
singlet/doubletdoublet
Overlap geneTlr1, Tlr6, 9130005N14Rik
Upstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
Downstream geneTmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M06.bB6Ng01-058M06.g
ACCDH880255DH880256
length1,046468
definitionDH880255|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M06, 5' end.DH880256|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,403,126 - 65,404,183)(65,275,436 - 65,275,909)
sequence
gaattcaaattcccagcaaccacatgatggctcacaaccatcagtacagc
tacagtgtacttatatacctaaaaacaaacaaataactaaataaattatt
aaaaaaattctgcacctaggcagatttcaaaatagaaagaaactggtttg
atcttgctctgttgttgttttttttttaataaaaacttctatgggtggag
atgaaaagggttaataaatgtaaattcacaatgtattcattagcagacgc
tgaatagaaattggcttatagatgcttgagctgggctctagaggtatgat
cctgagtttctgttcacactactaacctctctttctgcccttccctccct
ctcttcctccttccttcaccttacctcctctcccttctcttcatctatac
ttgtagggttagggctagaacccaggccttgtgcatgctaagaaagagac
acctccccttacctccccccccaattattttgttgtttaaaaacagagac
gacagaatgtccacgagtctgtccattattaacaacatcctgcacttgtt
tgctttgatgctagacctcttttatttggtttctcattaactttacaagg
acattaagtttatggaatcctttaatatctgcagagagccccataaatac
actggccgatgccacaaggtcacagggggaagatcatccaagaacatagg
ctggcgtttattatgtgccaataaaacaggcagcctcattttccgtttgg
gttcttgaggttgttagccaagaacccactatgccgtggaaggaattctc
tctcctgtctatctttaagactaaattagtaagtctctgccttttacagt
tttcaaaataacacagtgaaaccattactgggaaggtttaacaattgtaa
taaactcaactggtccctgacctcaggcactcggggatgggaaataaaac
cagagaccctgggatggtgccacttctcagacagtatcttcctgaatcac
tactttgggctagcatggagaagataaatagaagaagaggtgcatc
agtacagggtttacagtaaacaatgccaggtttttcagctagcactccta
aattctcctgtcaaaagctaagctagagatgccagcagagtccatactgg
aaagagctagccacagaccgtatgactgaatgttagagcaggaagagccg
ctttgctgatggcattattcttacatgcacaatcgttctattttaataca
tgaacttctgctttcccaagtgagaagggctctcagggaatagcacgtga
agtgaaaccacttcttgtccactagggccctttgactccaggcaggccct
tgcttcttggcagacacaggagtgtgtaggagggagaggaggttgttatc
aatggttcctgctattcttctctggcagactctgactttctattttctag
atttggtttttctctcccaccccctccctctccctccccttccccttctc
ctccccctctccccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65403126_65404183
seq2: B6Ng01-058M06.b_47_1092 (reverse)

seq1  GATGCACCTCTTTCCTTTCTATTTTATC-TCTCCATGCTAGCCCAAAGTA  49
      ||||||||||||    ||||| |||||| |||||||||||||||||||||
seq2  GATGCACCTCTT---CTTCTA-TTTATCTTCTCCATGCTAGCCCAAAGTA  46

seq1  GTGATTCAGAGAGGATACTGGTCCTGAGAAGTGGCACCATCCCAGGGTCT  99
      ||||||||| || |||||||   |||||||||||||||||||||||||||
seq2  GTGATTCAG-GAAGATACTG--TCTGAGAAGTGGCACCATCCCAGGGTCT  93

seq1  CTTGGTTTTATTTTCCCATCCCCCGAGTGCCCTGAGGTCAGGGGACCAGT  149
      | |||||||| |||||||| ||||||||| |||||||||| |||||||||
seq2  C-TGGTTTTA-TTTCCCAT-CCCCGAGTG-CCTGAGGTCA-GGGACCAGT  138

seq1  TGAGTTTTATTACAATTGTTAAACCTTCCCAGTAATGGTTTCACTGTGTT  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAG-TTTATTACAATTGTTAAACCTTCCCAGTAATGGTTTCACTGTGTT  187

seq1  ATTTTGAAAACTGTAAAAGGCAGAGACTTACTAATTTAGTCTTAAAGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAAACTGTAAAAGGCAGAGACTTACTAATTTAGTCTTAAAGATA  237

seq1  GACAGGAGAGAGAATTCCTTCCACGGCCTAGTGGGTTCTTGGCTAACAAC  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GACAGGAGAGAGAATTCCTTCCACGGCATAGTGGGTTCTTGGCTAACAAC  287

seq1  CTCAAGAACCCAAACGGAAAATGAGGCTGCCTGTTTTATTGGCACATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAACCCAAACGGAAAATGAGGCTGCCTGTTTTATTGGCACATAAT  337

seq1  AAACGCCAGCCTATGTTCTTGGATGATCTTCCCCCTGTGACCTTGTGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCAGCCTATGTTCTTGGATGATCTTCCCCCTGTGACCTTGTGGCA  387

seq1  TCGGCCAGTGTATTTATGGGGCTCTCTGCAGATATTAAAGGATTCCATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCAGTGTATTTATGGGGCTCTCTGCAGATATTAAAGGATTCCATAA  437

seq1  ACTTAATGTCCTTGTAAAGTTAATGAGAAACCAAATAAAAGAGGTCTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTCCTTGTAAAGTTAATGAGAAACCAAATAAAAGAGGTCTAGC  487

seq1  ATCAAAGCAAACAAGTGCAGGATGTTGTTAATAATGGACAGACTCGTGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAAACAAGTGCAGGATGTTGTTAATAATGGACAGACTCGTGGA  537

seq1  CATTCTGTCGTCTCTGTTTTTAAACAACAAAATAATTGGGGGGGGAGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTCGTCTCTGTTTTTAAACAACAAAATAATTGGGGGGGGAGGTA  587

seq1  AGGGGAGGTGTCTCTTTCTTAGCATGCACAAGGCCTGGGTTCTAGCCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGTGTCTCTTTCTTAGCATGCACAAGGCCTGGGTTCTAGCCCTA  637

seq1  ACCCTACAAGTATAGATGAAGAGAAGGGAGAGGAGGTAAGGTGAAGGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACAAGTATAGATGAAGAGAAGGGAGAGGAGGTAAGGTGAAGGAAG  687

seq1  GAGGAAGAGAGGGAGGGAAGGGCAGAAAGAGAGGTTAGTAGTGTGAACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGAGGGAGGGAAGGGCAGAAAGAGAGGTTAGTAGTGTGAACAG  737

seq1  AAACTCAGGATCATACCTCTAGAGCCCAGCTCAAGCATCTATAAGCCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGGATCATACCTCTAGAGCCCAGCTCAAGCATCTATAAGCCAAT  787

seq1  TTCTATTCAGCGTCTGCTAATGAATACATTGTGAATTTACATTTATTAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAGCGTCTGCTAATGAATACATTGTGAATTTACATTTATTAAC  837

seq1  CCTTTTCATCTCCACCCATAGAAGTTTTTATTAAAAAAAAAACAACAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATCTCCACCCATAGAAGTTTTTATTAAAAAAAAAACAACAACA  887

seq1  GAGCAAGATCAAACCAGTTTCTTTCTATTTTGAAATCTGCCTAGGTGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGATCAAACCAGTTTCTTTCTATTTTGAAATCTGCCTAGGTGCAG  937

seq1  AATTTTTTTAATAATTTATTTAGTTATTTGTTTGTTTTTAGGTATATAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTAATAATTTATTTAGTTATTTGTTTGTTTTTAGGTATATAAG  987

seq1  TACACTGTAGCTGTACTGATGGTTGTGAGCCATCATGTGGTTGCTGGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTAGCTGTACTGATGGTTGTGAGCCATCATGTGGTTGCTGGGAA  1037

seq1  TTTGAATTC  1058
      |||||||||
seq2  TTTGAATTC  1046

seq1: chr5_65275436_65275909
seq2: B6Ng01-058M06.g_66_539

seq1  GAATTCAGTACAGGGTTTACAGTAAACAATGCCAGGTTTTTCAGCTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACAGGGTTTACAGTAAACAATGCCAGGTTTTTCAGCTAGCA  50

seq1  CTCCTAAATTCTCCTGTCAAAAGCTAAGCTAGAGATGCCAGCAGAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAATTCTCCTGTCAAAAGCTAAGCTAGAGATGCCAGCAGAGTCCA  100

seq1  TACTGGAAAGAGCTAGCCACAGACCGTATGACTGAATGTTAGAGCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAAAGAGCTAGCCACAGACCGTATGACTGAATGTTAGAGCAGGAA  150

seq1  GAGCCGCTTTGCTGATGGCATTATTCTTACATGCACAATCGTTCTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCTTTGCTGATGGCATTATTCTTACATGCACAATCGTTCTATTTT  200

seq1  AATACATGAACTTCTGCTTTCCCAAGTGAGAAGGGCTCTCAGGGAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAACTTCTGCTTTCCCAAGTGAGAAGGGCTCTCAGGGAATAGC  250

seq1  ACGTGAAGTGAAACCACTTCTTGTCCACTAGGGCCCTTTGACTCCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAGTGAAACCACTTCTTGTCCACTAGGGCCCTTTGACTCCAGGCA  300

seq1  GGCCCTTGCTTCTTGGCAGACACAGGAGTGTGTAGGAGGGAGAGGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGCTTCTTGGCAGACACAGGAGTGTGTAGGAGGGAGAGGAGGTT  350

seq1  GTTATCAATGGTTCCTGCTATTCTTCTCTGGCAGACTCTGACTTTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAATGGTTCCTGCTATTCTTCTCTGGCAGACTCTGACTTTCTATT  400

seq1  TTCTAGATTTGGTTTTTCTCTCCCACCCCCTCCCTCTCCCTCCCCTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATTTGGTTTTTCTCTCCCACCCCCTCCCTCTCCCTCCCCTTCCC  450

seq1  CTTCTCCTCCCCCTCTCCCCCTCC  474
      ||||||||||||||||||||||||
seq2  CTTCTCCTCCCCCTCTCCCCCTCC  474