BAC Information

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BAC

Clone NameB6Ng01-058M15
Chromosome5 (Build37)
Map Location 70,506,225 - 70,648,212
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M15.bB6Ng01-058M15.g
ACCDH880271DH880272
length1,1201,081
definitionDH880271|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M15, 5' end.DH880272|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,647,079 - 70,648,212)(70,506,225 - 70,507,319)
sequence
gaattctttgctcagttctgagccccattttttaatggggttatttgttt
ttctggagtccaccttcttgagttctttatatatatattggatgatagtc
ccctacctgatttaggataggtaaagatcctttcccaatctgttggtggt
ctttttgtcttattgactgtgtttttcttaaggatttatcagttcttaat
aatactgccagctggagaccaatcttttttacacagagactttgagaaac
acaaacgttcaaaatcataccagatctttccaccaaaaagtatcaaagta
tagattatgatctcattatatctttgacaggaactctttgattattttta
tataacactggaaagagttcattcataatgatgataaagcattaaataag
gctattgaagataacaatccactgcattgttcatgtcttgataatttcaa
acacagctttcctctgttgccatattcctacagttatacagtatattcac
atgttaagggattccaaaacagtttatttttgcctatatgcttttcagag
ctaagattcttgatatttttattagttaaaaatatttagttgcaccttaa
taaataaattaattaaagcaacataaaatagatcacgtaataataaaata
cattataaaagtaacacataatcacataataaaagtatccacataaataa
aagtaacatattaagaacttataaatactgcatttttgagttcgttgtat
agtaaattacagtgatatatgttagcaaaaaatcatttcagtacttaaaa
gaatatttttcagagccaaactaatattatcaggaatgttcaatatatgt
catcacatcataggtacagtaatgtttaagaatttcattagccaggctgg
agagatggctcagtggttaagagaactgattgttgttctggagtcttgag
tttaattcccagcaaccacatgatagtcacaaccatctgtcatgggatct
gatacctcttcttgtgtggtgtcagagtcagttacagtgtacccatataa
ccaataataataatatatttttaaaagaatttcattagccaatttctagt
aaactattcacctgcctcaa
gaattcaattagtaaattgggggatatttgacataaaaaaacgaagtttc
ttatttgttgcggtacatttctccaacccagatatgccccagcaatggaa
acaccgctaatatgaatacatgctgtgtgcctagattgggcagatctatc
gctacattaccatcttccacagcttatgagaccccttagaacttgcagtt
tctcctggccaagtgcttctgctctgcttttctttgtcttcctcctcctc
tgcattctcttcctcttccactttctccttcatcccccaccctccactcc
accttcccttttatctgcccaatcatcagctctcctttattttacaaatt
aaggtgggaagcaggtttacagggaatcacctgggtgctgactcattcct
tgttcactaccactcacaggagaacagaattaacatcaaatataattagc
cccaggctatccataacacttattaataaacaaagataaccacgttgaag
tctttcatgagagattttttttctatacagatgtactaaatgatttttgt
gacatttttatcttatcatttcacttaatgatattaaaataggttgtatt
attatttttaaactttagactccatctttttatttgaagatgcagattta
atttctacttttcagcctttaatttttgtcactgcctcagaagagtctca
ttcttttatttgatgatgctggcaccttattatttgacctcagcttaaac
agtagttgccaggagagttcttctgtgtctatacaaattgtgcccaactt
ttcatgttcaattttaaaaagcatatgcccttattttaaaggttctagta
ttttttagatctacttctttttaatacatatgtttctcttagaatataag
agcaacacagtatgaagtcttttaaaattgctttattctttatttagtta
ataaattattactgttgaataaagaggaacttgatttttagtaacatttc
ttaagtaacttttctagaagtaggtactttagcttcagtaggtgtgtgag
tgtaaaaaagctgacgaagaaagaaaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70647079_70648212
seq2: B6Ng01-058M15.b_46_1165 (reverse)

seq1  TTGAGGCAGTTGAATATAGTTGTAACTTAAGGACATTGGCTAATGAAATT  50
      ||||||||| |||  |||||  | |||    || ||||||||||||||||
seq2  TTGAGGCAGGTGA--ATAGT--TTACT---AGAAATTGGCTAATGAAATT  43

seq1  CTTTTTAAAA-ATATTATTTATTTATTATTGGTTATATGAGTACACTGTA  99
      ||||| |||| ||||||     ||||||||||||||||| ||||||||||
seq2  CTTTTAAAAATATATTA-----TTATTATTGGTTATATGGGTACACTGTA  88

seq1  ACTGACTTCTGACA-CACACAAGAAGAGTGTATCAGATCCCATGACAGAT  148
      |||||| ||||||| ||||||||||||| |||||||||||||||||||||
seq2  ACTGAC-TCTGACACCACACAAGAAGAG-GTATCAGATCCCATGACAGAT  136

seq1  GGTTGTGACCTATCATGTGGTTGCTGGGAATTAAACTCAAGACCTCCAGA  198
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GGTTGTGA-CTATCATGTGGTTGCTGGGAATTAAACTCAAGA-CTCCAGA  184

seq1  ACAACAATCAGTTCTCTTAACCACTGAGCCATCTCTCCAGCCTGGCTAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATCAGTTCTCTTAACCACTGAGCCATCTCTCCAGCCTGGCTAAT  234

seq1  GAAATTCTTAAACATTACTGTACCTATGATGTGATGACATATATTGAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTAAACATTACTGTACCTATGATGTGATGACATATATTGAACA  284

seq1  TTCCTGATAATATTAGTTTGGCTCTGAAAAATATTCTTTTAAGTACTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATAATATTAGTTTGGCTCTGAAAAATATTCTTTTAAGTACTGAA  334

seq1  ATGATTTTTTGCTAACATATATCACTGTAATTTACTATACAACGAACTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTTGCTAACATATATCACTGTAATTTACTATACAACGAACTCA  384

seq1  AAAATGCAGTATTTATAAGTTCTTAATATGTTACTTTTATTTATGTGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAGTATTTATAAGTTCTTAATATGTTACTTTTATTTATGTGGAT  434

seq1  ACTTTTATTATGTGATTATGTGTTACTTTTATAATGTATTTTATTATTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTATGTGATTATGTGTTACTTTTATAATGTATTTTATTATTAC  484

seq1  GTGATCTATTTTATGTTGCTTTAATTAATTTATTTATTAAGGTGCAACTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTATTTTATGTTGCTTTAATTAATTTATTTATTAAGGTGCAACTA  534

seq1  AATATTTTTAACTAATAAAAATATCAAGAATCTTAGCTCTGAAAAGCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAACTAATAAAAATATCAAGAATCTTAGCTCTGAAAAGCATA  584

seq1  TAGGCAAAAATAAACTGTTTTGGAATCCCTTAACATGTGAATATACTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAAATAAACTGTTTTGGAATCCCTTAACATGTGAATATACTGTA  634

seq1  TAACTGTAGGAATATGGCAACAGAGGAAAGCTGTGTTTGAAATTATCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAGGAATATGGCAACAGAGGAAAGCTGTGTTTGAAATTATCAAG  684

seq1  ACATGAACAATGCAGTGGATTGTTATCTTCAATAGCCTTATTTAATGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACAATGCAGTGGATTGTTATCTTCAATAGCCTTATTTAATGCTT  734

seq1  TATCATCATTATGAATGAACTCTTTCCAGTGTTATATAAAAATAATCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATTATGAATGAACTCTTTCCAGTGTTATATAAAAATAATCAAA  784

seq1  GAGTTCCTGTCAAAGATATAATGAGATCATAATCTATACTTTGATACTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGTCAAAGATATAATGAGATCATAATCTATACTTTGATACTTT  834

seq1  TTGGTGGAAAGATCTGGTATGATTTTGAACGTTTGTGTTTCTCAAAGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGAAAGATCTGGTATGATTTTGAACGTTTGTGTTTCTCAAAGTCT  884

seq1  CTGTGTAAAAAAGATTGGTCTCCAGCTGGCAGTATTATTAAGAACTGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAAAAAGATTGGTCTCCAGCTGGCAGTATTATTAAGAACTGATA  934

seq1  AATCCTTAAGAAAAACACAGTCAATAAGACAAAAAGACCACCAACAGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAAGAAAAACACAGTCAATAAGACAAAAAGACCACCAACAGATT  984

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGGTAGGGGACTATCATCCAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGATCTTTACCTATCCTAAATCAGGTAGGGGACTATCATCCAAT  1034

seq1  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAAACAAATAACCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAAACAAATAACCCC  1084

seq1  ATTAAAAAATGGGGCTCAGAACTGAGCAAAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATGGGGCTCAGAACTGAGCAAAGAATTC  1120

seq1: chr5_70506225_70507319
seq2: B6Ng01-058M15.g_66_1146

seq1  GAATTCAATTAGTAAATTGGGGGATATTTGACATAAAAAAACGAAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGTAAATTGGGGGATATTTGACATAAAAAAACGAAGTTTC  50

seq1  TTATTTGTTGCGGTACATTTCTCCAACCCAGATATGCCCCAGCAATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTGCGGTACATTTCTCCAACCCAGATATGCCCCAGCAATGGAA  100

seq1  ACACCGCTAATATGAATACATGCTGTGTGCCTAGATTGGGCAGATCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCTAATATGAATACATGCTGTGTGCCTAGATTGGGCAGATCTATC  150

seq1  GCTACATTACCATCTTCCACAGCTTATGAGACCCCTTAGAACTTGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTACCATCTTCCACAGCTTATGAGACCCCTTAGAACTTGCAGTT  200

seq1  TCTCCTGGCCAAGTGCTTCTGCTCTGCTTTTCTTTGTCTTCCTCCTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCCAAGTGCTTCTGCTCTGCTTTTCTTTGTCTTCCTCCTCCTC  250

seq1  TGCATTCTCTTCCTCTTCCACTTTCTCCTTCATCCCCCACCCTCCACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCTTCCTCTTCCACTTTCTCCTTCATCCCCCACCCTCCACTCC  300

seq1  ACCTTCCCTTTTATCTGCCCAATCATCAGCTCTCCTTTATTTTACAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTTTTATCTGCCCAATCATCAGCTCTCCTTTATTTTACAAATT  350

seq1  AAGGTGGGAAGCAGGTTTACAGGGAATCACCTGGGTGCTGACTCATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGAAGCAGGTTTACAGGGAATCACCTGGGTGCTGACTCATTCCT  400

seq1  TGTTCACTACCACTCACAGGAGAACAGAATTAACATCAAATATAATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTACCACTCACAGGAGAACAGAATTAACATCAAATATAATTAGC  450

seq1  CCCAGGCTATCCATAACACTTATTAATAAACAAAGATAACCACGTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTATCCATAACACTTATTAATAAACAAAGATAACCACGTTGAAG  500

seq1  TCTTTCATGAGAGATTTTTTTTCTATACAGATGTACTAAATGATTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGAGAGATTTTTTTTCTATACAGATGTACTAAATGATTTTTGT  550

seq1  GACATTTTTATCTTATCATTTCACTTAATGATATTAAAATAGGTTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTATCTTATCATTTCACTTAATGATATTAAAATAGGTTGTATT  600

seq1  ATTATTTTTAAACTTTAGACTCCATCTTTTTATTTGAAGATGCAGATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAAACTTTAGACTCCATCTTTTTATTTGAAGATGCAGATTTA  650

seq1  ATTTCTACTTTTCAGCCTTTAATTTTTGTCACTGCCTCAGAAGAGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTTTTCAGCCTTTAATTTTTGTCACTGCCTCAGAAGAGTCTCA  700

seq1  TTCTTTTATTTGATGATGCTGGCACCTTATTATTTGACCTCAGCTTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTTGATGATGCTGGCACCTTATTATTTGACCTCAGCTTAAAC  750

seq1  AGTAGTTGCCAGGAGAGTTCTTCTGTGTCTATACAAATTGTGCCCAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGCCAGGAGAGTTCTTCTGTGTCTATACAAATTGTGCCCAACTT  800

seq1  TTCATGTTCAATTTTAAAAAGCATATGCCCTTATTTTAAAGGTTCTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCAATTTTAAAAAGCATATGCCCTTATTTTAAAGGTTCTAGTA  850

seq1  TTTTTTAGATCTACTTCTTTTTTAATACATATGTTTCTCTTAGAATATAA  900
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TTTTTTAGATCTACTTC-TTTTTAATACATATGTTTCTCTTAGAATAT-A  898

seq1  AGAGCAACACAGTATGAAGTCTTTTAAAATTGCTTTATTCTTTATTTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACACAGTATGAAGTCTTTTAAAATTGCTTTATTCTTTATTTAGT  948

seq1  TAATAAATTATTTACTGGTTGAATAAAGAGGAACTTGATTTTTAGTAACA  1000
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TAATAAATTA-TTACT-GTTGAATAAAGAGGAACTTGATTTTTAGTAACA  996

seq1  TTTTCTTAGGTTAACTTTTCTTAGAAGTAGGTACTTTAGCTTCAGTAGGT  1050
       ||||||| | ||||||||| |||||||||||||||||||||||||||||
seq2  -TTTCTTAAG-TAACTTTTC-TAGAAGTAGGTACTTTAGCTTCAGTAGGT  1043

seq1  GTGTGAAGTGTAAAAGAAAGGCAGACGAAAGAAAGAAAGAAAGAA  1095
      ||||| |||||||   ||| || |||| |||||||||  ||||||
seq2  GTGTG-AGTGTAA---AAAAGCTGACG-AAGAAAGAA--AAAGAA  1081