BAC Information

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BAC

Clone NameB6Ng01-059C03
Chromosome5 (Build37)
Map Location 26,376,064 - 26,426,734
singlet/doubletdoublet
Overlap geneEG664804, LOC619645, LOC100039045, 5031410I06Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a
Downstream geneLOC434689, LOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C03.bB6Ng01-059C03.g
ACCDH880505DH880506
length1,142237
definitionDH880505|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C03, 5' end.DH880506|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,425,584 - 26,426,734)(26,376,064 - 26,376,296)
sequence
gaattctattactgctaacatatagcactctaaaacacacattcattcat
gatcccgtgaaccagatactgattaatatacagccattgttctagagcag
ctgcggatataaaaacactcagaaaggaatataaaataaatcaggaaggc
cagagccagctgcctcagtttacttgcaatagagcaacagtgattgagga
gaacaatggcttccctttggttctggcctgaaagggtcagagccgttaac
tgggagaaagttcaggggttgttcctcctgaaagggagggatgtctaaac
atgactttctgtgagccagagtttttccttgttcctcgtcaagagttaat
atttaccctgagaggaagatgtccttaggtcttcagataacagtttcttc
ttctgaaattcattgttgttatgagaaaatgactccaaaattgataatat
tgtttgccagatgcaactaagtaaaaatgttattttttgagcaaaatttg
caaagtcataccccatgtttttaagctgtagaaatcagtaaagctttgct
acttgccagcagagcggtaatctatctgtttctttaaggcattctcgaag
ctggtcgtcatcaaatgttaaccacatagcagatataatgaccttccatg
gcttgctgggaaatagcttttgatagatgctgctgtccttgaccataaac
ttgctgtgtttttgctgttgctgattagacttatgtttaacatttatgtg
aatgggtgtctttcctactgaatgtaatacagtatgtggctcctcctgag
ggacgtttccctcagaggacagaagaaggaaccacaaccattcctggaga
tggttgttaggcaccatgtgggtcttctagagagtagcagatgctctaac
ctgtgaggcatccccacacctcctgaagttgactttgtccttccagagaa
tgtgcttgtttagatggccaggatcaagcccagttgagtggagaaatctc
agagatgtgtaagtacagtgctgactgctcatactcatgtcctatgctgc
cagcatgtatgaaggctttgatgttaccactggcaggtctgtgttcgaag
ctattttgacaaaatggcggtaagagggaagttgtggattga
atgacaatgtggatacagtatggtggtgaatacatcttagtgtgtacatg
gggtaagccacatgatccacacacaagagaccatcgcctcgtgtatccct
aggtggctatgacttcacacatatacagaaaaggatagctgggtctcggt
ttagttggagaagatgtaactgaccctaaagagaccgaagtctctctcgg
gaagtttagaggtctggtggggtgggtttggggatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26425584_26426734
seq2: B6Ng01-059C03.b_48_1189 (reverse)

seq1  TCAATCCACAACTTTCCCTC-TACCG-CATTTTGTCCAAATAAAAGGCTC  48
      |||||||||||| ||||||| ||||| ||||||||| |||||    ||| 
seq2  TCAATCCACAAC-TTCCCTCTTACCGCCATTTTGTCAAAATA----GCTT  45

seq1  TGAACACAGAACTGCCAGTGGTAACATCAGAGCCCTTCATACATGCCTGG  98
       ||||||||| |||||||||||||||||| || |||||||||||| ||||
seq2  CGAACACAGACCTGCCAGTGGTAACATCAAAG-CCTTCATACATG-CTGG  93

seq1  CAGCATAGGACAATGAGTATGAGCAGGTCAGGCACTGTACCTACACATCT  148
      ||||||||||| ||||||||||||| |||| ||||||||| |||||||||
seq2  CAGCATAGGAC-ATGAGTATGAGCA-GTCA-GCACTGTACTTACACATCT  140

seq1  CCTGAGATTTCTCCACTCAACTGGGCTTGATCCTGGCCATCTAAAC-AGC  197
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -CTGAGATTTCTCCACTCAACTGGGCTTGATCCTGGCCATCTAAACAAGC  189

seq1  ACATTCTCTGGAAGGACAAAAGTCAACTTCAGGAGGTGTGGGGATGCCTC  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGGAAGGAC-AAAGTCAACTTCAGGAGGTGTGGGGATGCCTC  238

seq1  ACAGGTTAGAGCATCTGCTACTCTCTAGAAGACCCACATGGTGCCTAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTAGAGCATCTGCTACTCTCTAGAAGACCCACATGGTGCCTAACA  288

seq1  ACCATCTCCAGGAATGGTTGTGGTTCCTTCTTCTGTCCTCTGAGGGAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCCAGGAATGGTTGTGGTTCCTTCTTCTGTCCTCTGAGGGAAAC  338

seq1  GTCCCTCAGGAGGAGCCACATACTGTATTACATTCAGTAGGAAAGACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAGGAGGAGCCACATACTGTATTACATTCAGTAGGAAAGACACC  388

seq1  CATTCACATAAATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATAAATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACA  438

seq1  GCAAGTTTATGGTCAAGGACAGCAGCATCTATCAAAAGCTATTTCCCAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTATGGTCAAGGACAGCAGCATCTATCAAAAGCTATTTCCCAGC  488

seq1  AAGCCATGGAAGGTCATTATATCTGCTATGTGGTTAACATTTGATGACGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGAAGGTCATTATATCTGCTATGTGGTTAACATTTGATGACGA  538

seq1  CCAGCTTCGAGAATGCCTTAAAGAAACAGATAGATTACCGCTCTGCTGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCGAGAATGCCTTAAAGAAACAGATAGATTACCGCTCTGCTGGC  588

seq1  AAGTAGCAAAGCTTTACTGATTTCTACAGCTTAAAAACATGGGGTATGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCAAAGCTTTACTGATTTCTACAGCTTAAAAACATGGGGTATGAC  638

seq1  TTTGCAAATTTTGCTCAAAAAATAACATTTTTACTTAGTTGCATCTGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTTTGCTCAAAAAATAACATTTTTACTTAGTTGCATCTGGCA  688

seq1  AACAATATTATCAATTTTGGAGTCATTTTCTCATAACAACAATGAATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTATCAATTTTGGAGTCATTTTCTCATAACAACAATGAATTTC  738

seq1  AGAAGAAGAAACTGTTATCTGAAGACCTAAGGACATCTTCCTCTCAGGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAACTGTTATCTGAAGACCTAAGGACATCTTCCTCTCAGGGT  788

seq1  AAATATTAACTCTTGACGAGGAACAAGGAAAAACTCTGGCTCACAGAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAACTCTTGACGAGGAACAAGGAAAAACTCTGGCTCACAGAAAG  838

seq1  TCATGTTTAGACATCCCTCCCTTTCAGGAGGAACAACCCCTGAACTTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTAGACATCCCTCCCTTTCAGGAGGAACAACCCCTGAACTTTCT  888

seq1  CCCAGTTAACGGCTCTGACCCTTTCAGGCCAGAACCAAAGGGAAGCCATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAACGGCTCTGACCCTTTCAGGCCAGAACCAAAGGGAAGCCATT  938

seq1  GTTCTCCTCAATCACTGTTGCTCTATTGCAAGTAAACTGAGGCAGCTGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCAATCACTGTTGCTCTATTGCAAGTAAACTGAGGCAGCTGGC  988

seq1  TCTGGCCTTCCTGATTTATTTTATATTCCTTTCTGAGTGTTTTTATATCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTTCCTGATTTATTTTATATTCCTTTCTGAGTGTTTTTATATCC  1038

seq1  GCAGCTGCTCTAGAACAATGGCTGTATATTAATCAGTATCTGGTTCACGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCTCTAGAACAATGGCTGTATATTAATCAGTATCTGGTTCACGG  1088

seq1  GATCATGAATGAATGTGTGTTATAGAGTGCTATATGTTAGCAGTAATAGA  1147
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATCATGAATGAATGTGTGTTTTAGAGTGCTATATGTTAGCAGTAATAGA  1138

seq1  ATTC  1151
      ||||
seq2  ATTC  1142

seq1: chr5_26376064_26376296
seq2: B6Ng01-059C03.g_73_309

seq1  ATGACAACGTGGATACAGTATGGTGGTGAATACATCTTAGTGTGTACATG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGTGGATACAGTATGGTGGTGAATACATCTTAGTGTGTACATG  50

seq1  GGGTAAGCCACTTGATCCACACACAAGAGACCATCACCTCGTGTATCCCT  100
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GGGTAAGCCACATGATCCACACACAAGAGACCATCGCCTCGTGTATCCCT  100

seq1  AGGTGGCTATGACTTCACACATATACAGAAAAGGATAGCTGGGTCTGGGT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGTGGCTATGACTTCACACATATACAGAAAAGGATAGCTGGGTCTCGGT  150

seq1  TTAGTCAGAGAAGATGCAACTGACCCTAAAGAGACCGAGGTCTCT----G  196
      |||||  ||||||||| ||||||||||||||||||||| ||||||    |
seq2  TTAGTTGGAGAAGATGTAACTGACCCTAAAGAGACCGAAGTCTCTCTCGG  200

seq1  GAAGTTCAGAGGTCTGGTGGGGTGGGTTTGGGGATCC  233
      |||||| ||||||||||||||||||||||||||||||
seq2  GAAGTTTAGAGGTCTGGTGGGGTGGGTTTGGGGATCC  237