BAC Information

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BAC

Clone NameB6Ng01-059C07
Chromosome13 (Build37)5 (Build37)
Map Location 76,634,976 - 76,637,2256,127,866 - 6,128,971
singlet/doubletsingletsinglet
Overlap geneMctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C07.bB6Ng01-059C07.g
ACCDH880511DH880512
length9711,089
definitionDH880511|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C07, 5' end.DH880512|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,634,976 - 76,637,225)(6,127,866 - 6,128,971)
sequence
gaattcagaactcttcagctggggaacaggatacccgtaagtatagcttt
acaaggtaagtctggccttgaactttctaacgaaattcaagacagtctat
cagaagtaaagtgggaaatagctttacaaggtaagtctggtcttgaactt
tctaacgaaattcaagacagtctatcagaagtaaagtggggaatagcttt
acaaggtacgcctggccttgaactttctaacgaaattcaagacagtctat
cagaagtaaagtgggaaatagctttacaaggtatgtttggccttgaactt
tttctagtgttaggagcccttttgttccttttcacatgttatcaagcggt
taaggcagggctgaaaattctggatgaaattcagggcaatctatcagaag
taaagcggggagagagagtatgagcaaagaggaaatatggtacacaaaat
aagtatacaggcctttccacgggtcttgaacctgaggaaaagtttaggtc
aggtaagaatacctggggagagattagaaggaaggaaaagaaaaaaggtc
aattagcggaggtctctaggagaaggagcctatactcattactagatgag
ctcaaggagccagttcttaatagttctgaatcagatgaaaaggctattag
ggcctggaaggcgctctcccgagcaggtgaagccactggacaactaacaa
agatcgtccagggacctcaggagtcattctcagattttgtggccagaatg
acagaggcagcagagcatatttttggagattcagagcaagccgcacctct
ggtagaatagcttatttatgagcaagccacacaggagtgcagagcggtca
tagtcccaagaaagaacaaagatttacagactggctcaggtttgtcggga
acttgggggacctctcattatgcgttacttccattcagtatgagaaattt
actaggcagctaatttgtcaa
gaattctttgtaaagagttctctatgtacccacaagttatatgcttatgt
aatcactaccaggctatgtagttattgcttctggtacatttacttggttt
atttctgcattttagttaatatacttctagactagttatgagaacataat
tgatacttgggaatagaattactaaaatgagtatatgcttcctttttatt
ttagtgtgtatcattagttttagttgcttttcctattacatcatttgtct
tttgcagttcctatggttttgccagatcaaaaactatctaagcaaaaatg
aaacaagttggttgaaaagaaacttcaaaaatgaaattgataacacttaa
ttttggggattttagctatttttatatgaataaaatattctctgtcattt
gatttatgtatgaagaggagtgcctatgcagttaaatagtatattagctc
tttataaaccatctcatgtttattcacaaggcaactggagttatctattt
caaatttgcttcagaaagggaaattaacctagagttaaagttaaatgatg
aattgtctgataaatggttgtgtgataatgtctgtgttagcaagtagcac
atcatagcatgacaaaattctagtgccgagtttatatttctaatatttaa
tggatgtatgcgatttaaccatatgtagaatagatcatctacagaatcag
aaaagggattagagatgtattcattgcagataattcagagttccattcat
aatcttccagggttcctgtgtgtgatctgaggtaaactatttccgcaggt
aaaaacctacccactgacattgtttatcagcgagattgaagactacactc
ttctctagtggatggtatctttttaatcagttagataatttcgaggaatg
cactcaaattttcccatataccctacattctttacactggtttattagat
attatttatttcttattataatatttcctcttagtttgaaatttgatttt
ttattctctcagatattaatacagcatagaagaatgcttaatatccaaga
taattttggcattaatgtgagtttgcaaaattgttactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76634976_76637225
seq2: B6Ng01-059C07.b_46_562 (reverse)

seq1  CCCAGGTATTCTTACCTGACCTTAACTTTTCCTCGAGTTCAAGGACCCGT  50
      |||||||||||||||||||||| |||||||||||  |||||| |||||||
seq2  CCCAGGTATTCTTACCTGACCTAAACTTTTCCTCAGGTTCAA-GACCCGT  49

seq1  GGAAAGGCCTGTATACTTATTTTGTGCGCCATGTTTCCTCTTTGCTCCTA  100
      ||||||||||||||||||||||||||  |||| |||||||||||||| ||
seq2  GGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCCTCTTTGCTCATA  99

seq1  CTCTCTCTCCCCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCCCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGA  149

seq1  ATTTTCAGCCCTGCCTTAACCACTTGATAACATGTGAAAAGGAACAAAAA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  ATTTTCAGCCCTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAG  199

seq1  GGCTCCTAACACTAGAGAAAGTTCAAGGCCAAACATACCTTGTAAAGCTA  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCTCCTAACACTAGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTA  249

seq1  TTTCCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCA  299

seq1  AGACCAGACTTACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACT  350
      || |||| | ||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCCAGGCGTACCTTGTAAAGCTATTCCCCACTTTACTTCTGATAGACT  349

seq1  GTCTTGAATTTCGTTAGAAAGTTCAAGGCCAGACTTACCTTGTAAAGCTA  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCTA  399

seq1  TACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGT  450
      |                ||||                         || |
seq2  T----------------TTCC-------------------------CACT  408

seq1  TGAATCCTTCTCAACAGTCTGTGTTGCGGGAACACTTCATTTCCACCATT  500
      |   | |||||  | || |||| |||            |||||       
seq2  T---TACTTCT-GATAGACTGTCTTG-----------AATTTC-------  436

seq1  CCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTC  550
           | |  | |||||  ||  | |  | ||    |||| | ||    |
seq2  -----GTTAGAAAGTTC--AAGGC-CAGACTT---ACCTTGTAAA---GC  472

seq1  TGT-TTTACGGGAACACTTCATTACCACCGTTCCCCAGCTGAGGAGTTCT  599
      | |  ||||||| |  ||           ||||||||||||| |||||||
seq2  TATACTTACGGGTATCCT-----------GTTCCCCAGCTGAAGAGTTCT  511

seq1  GAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACGGGAACCTTTATG  649
      |||| |                                            
seq2  GAATTC--------------------------------------------  517

seq1  ACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCCTGCGCCGG  699
                                                        
seq2  --------------------------------------------------  517

seq1  TGATGGTAACCGTCCCAGGTCTTCTCGTCCCGGGATTTCTCGTCCCAGGT  749
                                                        
seq2  --------------------------------------------------  517

seq1  CTTCTCGTCCCGGGTTTTCTCGTCCCGGGTCTCAGCACCAACTCTTACAC  799
                                                        
seq2  --------------------------------------------------  517

seq1  GCGTTCTTGCGACCGGCCAGGAAGGACGCAACAAACCGGAATCTTCTGCG  849
                                                        
seq2  --------------------------------------------------  517

seq1  GCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCCAGAGAGCCAG  899
                                                        
seq2  --------------------------------------------------  517

seq1  AGAGCAAGAGTACAAGAGTGCAAGAGAGAAAGAGAGCAAGAGCAAGAACA  949
                                                        
seq2  --------------------------------------------------  517

seq1  AGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGCA  999
                                                        
seq2  --------------------------------------------------  517

seq1  AGAAAAAGAACAAGAACAAGAAAGCAAGAGAAAGAACAAGAAAGCAAGAG  1049
                                                        
seq2  --------------------------------------------------  517

seq1  AGAGAAAACAAGAGAGAGAGTGGCAAAACCCCGTCCCTTTTAAGGAGAAT  1099
                                                        
seq2  --------------------------------------------------  517

seq1  TATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGC  1149
                                                        
seq2  --------------------------------------------------  517

seq1  CCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGGGAAAACTGCCCCT  1199
                                                        
seq2  --------------------------------------------------  517

seq1  GCACGTGTGCAGATTATGTTTACCACTTAGAACACAGCTGTCAGCGCCAT  1249
                                                        
seq2  --------------------------------------------------  517

seq1  CTTGTAATGGCAAATGTGAGGGTGGCTCCCAACACCATCTTCTGAGATCT  1299
                                                        
seq2  --------------------------------------------------  517

seq1  TCTTTAATTTCTTTCTTCAGTGACTTGAACTTCTTATCATACAGATCTTT  1349
                                                        
seq2  --------------------------------------------------  517

seq1  CACTTCCTTAGAGTCACGCCAAGGTATTTTATAATATTTGTGACTATTGA  1399
                                                        
seq2  --------------------------------------------------  517

seq1  GAAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGT  1449
                                                        
seq2  --------------------------------------------------  517

seq1  AGAGAAAGGTCATTGACTTGTTTGAGTTAATTTGTGANNNNNNNNNNNNN  1499
                                                        
seq2  --------------------------------------------------  517

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1549
                                                        
seq2  --------------------------------------------------  517

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGATTCCTGAGG  1599
                                                        
seq2  --------------------------------------------------  517

seq1  TCCCTGGACGATCTTTGTTACTTGTCCAGTGGCTTCACCTGCTCCAGAGA  1649
                                                        
seq2  --------------------------------------------------  517

seq1  GCGCCTTCCAGGCCCTAATAACCTTTTCATCTGATTCAGAACTATTAAGA  1699
                                                        
seq2  --------------------------------------------------  517

seq1  ACTGGCTCCTTGACCTCACCTAGTGATGAGTATACGCTCCTTCTCCTACA  1749
                                                        
seq2  --------------------------------------------------  517

seq1  GACCTCCGCTAATTGATCTTTTTTCTTTTCTTTTTCCTTCTCCTTCCTTC  1799
                                                        
seq2  --------------------------------------------------  517

seq1  TAATCTCTCCCCAGGTATTCTTACCTGACCTTAACTTTTCCTCGAGTTCA  1849
                                                        
seq2  --------------------------------------------------  517

seq1  AGACCCGTGGAAAGGCCTGTATACTTATTTTGTGCGCCATGTTTCCTCTT  1899
                                                        
seq2  --------------------------------------------------  517

seq1  TGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGATTGCCCTGAATTT  1949
                                                        
seq2  --------------------------------------------------  517

seq1  CATCCAGAATTTTCAGCCCTGCCTTAACCACTTGATAACATGTGAAAAGG  1999
                                                        
seq2  --------------------------------------------------  517

seq1  AACAAAAAGGCTCCTAACACTAGAGAAAGTTCAAGGCCAAACATACCTTG  2049
                                                        
seq2  --------------------------------------------------  517

seq1  TAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAG  2099
                                                        
seq2  --------------------------------------------------  517

seq1  AAAGTTCAAGACCAGACTTACCTTGTAAAGCTATTTCCCACTTTACTTCT  2149
                                                        
seq2  --------------------------------------------------  517

seq1  GATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGGCCAGACTTACCTTG  2199
                                                        
seq2  --------------------------------------------------  517

seq1  TAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTTCTGAATT  2249
                                                        
seq2  --------------------------------------------------  517

seq1  C  2250
       
seq2  -  517

seq1: chr5_6127866_6128971
seq2: B6Ng01-059C07.g_67_1155

seq1  GAATTCTTTGTAAAGAGTTCTCTATGTACCCACAAGTTATATGCTTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAAAGAGTTCTCTATGTACCCACAAGTTATATGCTTATGT  50

seq1  AATCACTACCAGGCTATGTAGTTATTGCTTCTGGTACATTTACTTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTACCAGGCTATGTAGTTATTGCTTCTGGTACATTTACTTGGTTT  100

seq1  ATTTCTGCATTTTAGTTAATATACTTCTAGACTAGTTATGAGAACATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCATTTTAGTTAATATACTTCTAGACTAGTTATGAGAACATAAT  150

seq1  TGATACTTGGGAATAGAATTACTAAAATGAGTATATGCTTCCTTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTGGGAATAGAATTACTAAAATGAGTATATGCTTCCTTTTTATT  200

seq1  TTAGTGTGTATCATTAGTTTTAGTTGCTTTTCCTATTACATCATTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTATCATTAGTTTTAGTTGCTTTTCCTATTACATCATTTGTCT  250

seq1  TTTGCAGTTCCTATGGTTTTGCCAGATCAAAAACTATCTAAGCAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTCCTATGGTTTTGCCAGATCAAAAACTATCTAAGCAAAAATG  300

seq1  AAACAAGTTGGTTGAAAAGAAACTTCAAAAATGAAATTGATAACACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTGGTTGAAAAGAAACTTCAAAAATGAAATTGATAACACTTAA  350

seq1  TTTTGGGGATTTTAGCTATTTTTATATGAATAAAATATTCTCTGTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGATTTTAGCTATTTTTATATGAATAAAATATTCTCTGTCATTT  400

seq1  GATTTATGTATGAAGAGGAGTGCCTATGCAGTTAAATAGTATATTAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGTATGAAGAGGAGTGCCTATGCAGTTAAATAGTATATTAGCTC  450

seq1  TTTATAAACCATCTCATGTTTATTCACAAGGCAACTGGAGTTATCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACCATCTCATGTTTATTCACAAGGCAACTGGAGTTATCTATTT  500

seq1  CAAATTTGCTTCAGAAAGGGAAATTAACCTAGAGTTAAAGTTAAATGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGCTTCAGAAAGGGAAATTAACCTAGAGTTAAAGTTAAATGATG  550

seq1  AATTGTCTGATAAATGGTTGTGTGATAATGTCTGTGTTAGCAAGTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTGATAAATGGTTGTGTGATAATGTCTGTGTTAGCAAGTAGCAC  600

seq1  ATCATAGCATGACAAAATTCTAGTGCCGAGTTTATATTTCTAATATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCATGACAAAATTCTAGTGCCGAGTTTATATTTCTAATATTTAA  650

seq1  TGGATGTATGCGATTTAACCATATGTAGAATAGATCATCTACAGAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTATGCGATTTAACCATATGTAGAATAGATCATCTACAGAATCAG  700

seq1  AAAAGGGATTAGAGATGTATTCATTGCAGATAATTCAGAGTTCCATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATTAGAGATGTATTCATTGCAGATAATTCAGAGTTCCATTCAT  750

seq1  AATCTTCCAGGGTTCCTGTGTGTGATCTGAGGTAAACTATTTCCGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCAGGGTTCCTGTGTGTGATCTGAGGTAAACTATTTCCGCAGGT  800

seq1  AAAAACCTACCCACTGACATTGTTTATCAGCGAGATTGAAGACTACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTACCCACTGACATTGTTTATCAGCGAGATTGAAGACTACACTC  850

seq1  TTCTCTAGTGGATGGTATCTTTTTAATCAGTTAGATAATTTCGAGGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTGGATGGTATCTTTTTAATCAGTTAGATAATTTCGAGGAATG  900

seq1  CACTCAAATTTTCCCCATATACCCTACATTCTTTTACACTGGTTTTATTA  950
      |||||||||||| |||||||||||||||||| |||||||||| |||||||
seq2  CACTCAAATTTT-CCCATATACCCTACATTC-TTTACACTGG-TTTATTA  947

seq1  GATATTATTTTATTTCTTATTATAATTATTTCCTCTTAGTTTGAAATTTG  1000
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GATATTA-TTTATTTCTTATTATAA-TATTTCCTCTTAGTTTGAAATTTG  995

seq1  ATTTTTTTATTCTCTTCAGATAATTAAATACAGCATAGAGAAATGCTTAA  1050
      | |||||||||||| |||||||  | |||||||||||||  |||||||||
seq2  A-TTTTTTATTCTC-TCAGATA--TTAATACAGCATAGAAGAATGCTTAA  1041

seq1  ATTATCCAAAGATTACATTTTGGCCATTAATGTGAGTTTTGCAAAAATTG  1100
        ||||| |||||   ||||||| |||||||||||| ||||| |||||||
seq2  --TATCC-AAGAT--AATTTTGG-CATTAATGTGAG-TTTGC-AAAATTG  1083

seq1  TTACTG  1106
      ||||||
seq2  TTACTG  1089