BAC Information

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BAC

Clone NameB6Ng01-059H05
Chromosome5 (Build37)
Map Location 127,251,858 - 127,378,333
singlet/doubletdoublet
Overlap geneLOC100040327
Upstream geneTmem132b, EG231736, LOC100039178, LOC665760
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059H05.bB6Ng01-059H05.g
ACCDH880731DH880732
length1,205487
definitionDH880731|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H05, 5' end.DH880732|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,251,858 - 127,253,085)(127,377,842 - 127,378,333)
sequence
gaattcagtttctacgttatctgctgccccatgaactaaagcatcgccct
tcatctcaatgctgctctttctgcagggtgagtctgatgttgccaacgct
actctaaggcacaacatggctagctgcttccctaagccaagatatttcca
ttcagcagaccatggctacctcccagaaactggggacaatggacagacct
ttctgggaagaaaaatgactagggttttttttttttttcatttttaatgt
ttatgttttaattttacgtgtgttggtgttttgcatgtctatatatgacc
tgcattcagtaccctcctcagggagtgcagctgatacctagaactggact
tacagatggttgttggagttacagatggttgtgagtgaccgtgctgggaa
ctgaaccctggtcttttgcaaaagaaaccttaaccactaagccacccccc
ccccccagcctcagtagctaaattctttaccatatactatctttgtagta
tgattggattggctagtgtctaaggtctgccaaataaagtcaatagttac
ctgaaaggtattcttgtcatgatcaccatttctaaatcttatttggcagg
tgtcatgtgaaggtgtcatgtattactatgcagctgtgtcctcagggcta
gaacggttcctccctgagaggaagaggctcataaaaatcaggaggcctct
ccctggggctatatcagcagccaaatctactagggaaatgagattctggt
ggagctgcctataagctgtacagagagcctctaagcccttttgagttgtc
acttactctccggtgagcttttcgacgacacagatgcctttgagaaaact
ctgctcctttagtaacaccaataaacccactgtttattaaccattcattt
cttcactgcatcagtgctgttcttgggcaaagggatgtttttttgtgcat
cttaggaaaggtcacacgtgtggctgcatttccatctttttataaacctc
tgttcttgctttctaagcaccaccaggattcttaaaggtgatcagaaggt
cagcagaaaggcattcctctggtctgaactggtgggaagaaaacaagtgg
actgactttcacttatgtttcttcctgcacggggtacaattatatccaaa
gttcggggctatccaaacttctagtgtgactctctgaggaggcgtggtcc
tgtat
acgagttgaatgtgtgtatgtgtatgtgtgtgtgtgatatgctccaactt
gcaaacacacacacacacacacacacacacacacacacacacacacacac
acacacacacggtgggacagcggtttttagaaccttaatactttcaacta
aaagttagttttacgatcaatgctatataccagtaacgtttttctgcccg
gaacattattttgctttaccatgtaaaattaaaatagactccaatctaaa
gcataaatttgattttgggaaatgcttgtgtgagcggcattcttccttgt
agatgtgtgacagaattcagaggctgtttagacaaagtctctttggggga
attatatttctttaacaccatccacttttactgattctctttctaatcaa
acacccttgtctttaaagggcattatgatccagggagaagtggacattgg
tttgttcttgttaaaatgcttcataaaataaacagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127251858_127253085
seq2: B6Ng01-059H05.b_45_1249

seq1  GAATTCAGTTTCTACGTTATCTGCTGCCCCATGAACTAAAGCATCGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTACGTTATCTGCTGCCCCATGAACTAAAGCATCGCCCT  50

seq1  TCATCTCAATGCTGCTCTTTCTGCAGGGTGAGTCTGATGTTGCCAACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAATGCTGCTCTTTCTGCAGGGTGAGTCTGATGTTGCCAACGCT  100

seq1  ACTCTAAGGCACAACATGGCTAGCTGCTTCCCTAAGCCAAGATATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGGCACAACATGGCTAGCTGCTTCCCTAAGCCAAGATATTTCCA  150

seq1  TTCAGCAGACCATGGCTACCTCCCAGAAACTGGGGACAATGGACAGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGACCATGGCTACCTCCCAGAAACTGGGGACAATGGACAGACCT  200

seq1  TTCTGGGAAGAAAAATGACTAGGGTTTTTTTTTTTTTTCATTTTTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAGAAAAATGACTAGGGTTTTTTTTTTTTTTCATTTTTAATGT  250

seq1  TTATGTTTTAATTTTACGTGTGTTGGTGTTTTGCATGTCTATATATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTAATTTTACGTGTGTTGGTGTTTTGCATGTCTATATATGACC  300

seq1  TGCATTCAGTACCCTCCTCAGGGAGTGCAGCTGATACCTAGAACTGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAGTACCCTCCTCAGGGAGTGCAGCTGATACCTAGAACTGGACT  350

seq1  TACAGATGGTTGTTGGAGTTACAGATGGTTGTGAGTGACCGTGCTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTTGGAGTTACAGATGGTTGTGAGTGACCGTGCTGGGAA  400

seq1  CTGAACCCTGGTCTTTTGCAAAAGAAACCTTAACCACTAAGCCACCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCTGGTCTTTTGCAAAAGAAACCTTAACCACTAAGCCACCCCCC  450

seq1  CCCCCCAGCCTCAGTAGCTAAATTCTTTACCATATACTATCTTTGTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGCCTCAGTAGCTAAATTCTTTACCATATACTATCTTTGTAGTA  500

seq1  TGATTGGATTGGCTAGTGTCTAAGGTCTGCCAAATAAAGTCAATAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGATTGGCTAGTGTCTAAGGTCTGCCAAATAAAGTCAATAGTTAC  550

seq1  CTGAAAGGTATTCTTGTCATGATCACCATTTCTAAATCTTATTTGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGTATTCTTGTCATGATCACCATTTCTAAATCTTATTTGGCAGG  600

seq1  TGTCATGTGAAGGTGTCATGTATTACTATGCAGCTGTGTCCTCAGGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTGAAGGTGTCATGTATTACTATGCAGCTGTGTCCTCAGGGCTA  650

seq1  GAACGGTTCCTCCCTGAGAGGAAGAGGCTCATAAAAATCAGGAGGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGTTCCTCCCTGAGAGGAAGAGGCTCATAAAAATCAGGAGGCCTCT  700

seq1  CCCTGGGGCTATATCAGCAGCCAAATCTACTAGGGAAATGAGATTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGCTATATCAGCAGCCAAATCTACTAGGGAAATGAGATTCTGGT  750

seq1  GGAGCTGCCTATAAGCTGTACAGAGAGCCTCTAAGCCCTTTTGAGTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCCTATAAGCTGTACAGAGAGCCTCTAAGCCCTTTTGAGTTGTC  800

seq1  ACTTACTCTCCGGTGAGCTTTTCGACGACACAGATGCCTTTGAGATAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTACTCTCCGGTGAGCTTTTCGACGACACAGATGCCTTTGAGAAAACT  850

seq1  CTGCTCCTTTAAGTAACACCAATAAACCCACTGTTTTATTAACCATTCAT  900
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTCCTTT-AGTAACACCAATAAACCCACTG-TTTATTAACCATTCAT  898

seq1  TTCTTCCACTGCCATCAGTGCTGTTTCTTGGGCAAAGGGATGTTTATTTG  950
      ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||
seq2  TTCTT-CACTG-CATCAGTGCTG-TTCTTGGGCAAAGGGATGTTTTTTTG  945

seq1  TGCATCCTTAGGAAAAGTCACACAGTGTGGCTGCATTTCCATCTTTTTTA  1000
      ||||| ||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  TGCAT-CTTAGGAAAGGTCACAC-GTGTGGCTGCATTTCCATC-TTTTTA  992

seq1  TAAA-CTCTGTTC-TGCTTTCTAAGCACCACCAGGATTTCATACATGGTG  1048
      |||| |||||||| |||||||||||||||||||||| ||| || | ||||
seq2  TAAACCTCTGTTCTTGCTTTCTAAGCACCACCAGGA-TTCTTA-AAGGTG  1040

seq1  ATCAGAAGGGTCAGCAGAGAGGCATT-CTCTGGGTCTGGACCTGGTGGGA  1097
      ||||||| |||||||||| ||||||| |||| ||||| || |||||||||
seq2  ATCAGAA-GGTCAGCAGAAAGGCATTCCTCT-GGTCT-GAACTGGTGGGA  1087

seq1  GCAGAACCAGAGTGTGACTGACATTCACTTTATGTCTC-TCCTGCAGCGG  1146
        | ||| || |   ||||||| ||||| |||||| || |||||||  ||
seq2  AGAAAACAAGTG---GACTGACTTTCAC-TTATGTTTCTTCCTGCACGGG  1133

seq1  GTACAATTATATCCAAGAGGGTTTCTGGGAAGCTAATCCAAACACTGCAT  1196
      |||||||||||||||| ||   ||| ||   ||| ||||||  ||| |  
seq2  GTACAATTATATCCAA-AG---TTCGGG---GCT-ATCCAA--ACTTCTA  1173

seq1  GTGACTCTCTCTGAGGAGCGATGGCCCTGTAT  1228
      |||   ||||||||||||   ||| |||||||
seq2  GTGTGACTCTCTGAGGAGGCGTGGTCCTGTAT  1205

seq1: chr5_127377842_127378333
seq2: B6Ng01-059H05.g_69_560 (reverse)

seq1  TCTGTTTATTTTATAAAGCATTTTAACAAGAACAAACCAATGTCCACTTC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATTTTATGAAGCATTTTAACAAGAACAAACCAATGTCCACTTC  50

seq1  TCCCTGGATCCTAATGCCCTTTAAAGACATGGGTCTTTGATTAGAAAGAG  100
      |||||||||| |||||||||||||||||| |||| |||||||||||||||
seq2  TCCCTGGATCATAATGCCCTTTAAAGACAAGGGTGTTTGATTAGAAAGAG  100

seq1  AATCAGTAAAAGTGGATGGTGTTAAAGAAATATTATTCCCCCAAAGAGAC  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCAGTAAAAGTGGATGGTGTTAAAGAAATATAATTCCCCCAAAGAGAC  150

seq1  TTTGTCTAAACAGCCTCTGAATTCTGTCACACATCTCCAAGGAAGAATGC  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGTCTAAACAGCCTCTGAATTCTGTCACACATCTACAAGGAAGAATGC  200

seq1  CGCTCACACAAGCATTTCCCAAAATCAAATTTATGCTTTAGGTTGGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGCTCACACAAGCATTTCCCAAAATCAAATTTATGCTTTAGATTGGAGTC  250

seq1  TATTTTAATTTTACATGGTAAAGCAAAATAATGTTCCGGGCAGAAAAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATTTTACATGGTAAAGCAAAATAATGTTCCGGGCAGAAAAACG  300

seq1  TTACTGGTATATAGCATTGATCGTAAAACTAACTTTTAGTTGAAAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTATATAGCATTGATCGTAAAACTAACTTTTAGTTGAAAGTATT  350

seq1  AAGGTTCTAAAAACCGCTGTCCCACCGTGTGTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTAAAAACCGCTGTCCCACCGTGTGTGTGTGTGTGTGTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCAAGTTGGAGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCAAGTTGGAGCATAT  450

seq1  CACACACACACATACACATACACACATTCAACTCGTGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACATACACACATTCAACTCGTGAATTC  492