BAC Information

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BAC

Clone NameB6Ng01-059K11
Chromosome5 (Build37)
Map Location 81,964,495 - 82,157,581
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K11.bB6Ng01-059K11.g
ACCDH880865DH880866
length1,1431,055
definitionDH880865|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K11, 5' end.DH880866|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,156,414 - 82,157,581)(81,964,495 - 81,965,566)
sequence
gaattctagagctcttttcaacacattcagttaaggtcattctaatgtgt
ttatatattcatatatatatatatatatatatatatatatatatatatat
aaaagcatcctgggacccttcttttcctgaacaacctaggtacactgact
acaaattcaaacaataaccacttttctctccattaattccctgtcaacta
gactcttctccgcctatacattcttaagacttcatccttcacaaagctct
cctgtatattttgttgttgctgctgctttatttcgtatcgttttgttctg
cgtgccaggcaaacactctgacacagaactggagcctccccggcttatat
gacaccatttcagaattcccctattactttcatcacataaaccaataaat
tcagcaaaattacttcagggtatagatactatctgaagcctttgataact
tgttttttcacaccttccaatttgactggtgcttctagcactgtcttgag
atagctgttgcaagtgactttctgtctcctgcttatcctttttgaattat
ctttgacataaatcaccactggttctggaaggctaacatgaacccttttc
ttattttccatgaccttcagtcccaaggttctgtttctttggttctgctt
attcttcttctctgcatttattccccctcctcagtgtagccctataatgt
aggtgtttcttcaaataaaactttcattcattgcttgacaatcactgttg
acaagaaggcatttttgaactgaataattttccttattttaaaaactatt
tattttatgtggtggtttgcctgcatgtgtgaggatgcgagatgccctag
aattgataatgcagacagctgggaaaatcaagtaggtgctgggaattaaa
cgtgggtccttgaggaaaagaagaccgatgctcttagcagtggggcattt
ctcagctccaatccgttcttcttttcattttctttcccttctctccccac
gccccccatttgctagactgggcttttctgtgtagctcagctattctgga
actcgctctgaaacagctgactcactctgaatcgcccgtctcgcatcctg
gggtgctggactgcggaatctttcttttcgcggtatcctctat
gaattcaatgtgcctcataaggtaggggccaaagatgcacagacacgacc
atgcctggtcctgatgtattaaccttgagggagccaggtgtctattgtta
ctgagagagtcttaaacatcccccagaatttagttggcaacactcagatg
catttctttctttcttccattaacaaatctgtttgccagtcagggattta
aaaaaaattattattcctcagatactagccaggaggtcacattgccctca
caaggggagggcacagtagatgagttgttacagctcgttgtccttcatac
ttcctcctctttaggaggttacctttgtggtgtcctttactaaggtattc
aaaaggcagagggattttttgcttgtaatacttcctgaaaagaccaaatt
ggttggtttttaagccaattaatctaagaagagaacacctgtctctcctt
aaataatgagtccgatgttttcccatgaatacattttgggaaataatgct
gatcagtggagccataattcatttctagtcatctatttcttccaatttga
aacaaataaaagcttcctggtcgcgaggctcctgggaagaaaaaacaagc
tgattgttctcttgcctgtggagatattctccgtgaagaggagctcagat
gtacttggcagtgattgacttgtttaaagacgagggtagcagtgttagaa
gaggcacttgttcatttttaagtcgcggagcctaaatgaggtagactgtt
agaaggctcctttcagtcttctgtcgtgtttgctttgtgactaatgacca
ttctgggcgtagatattaactgcaagttgttctgaagaaactcctgctgt
tgcacgcatatgaatacgccttatctctcactgcctttacgctaaagcag
ctcaggaatttcctatgcatgaattattttacatgaattgttttatcttc
ggcctaagatgagaattgaagaacgattcacaggaattttctgtcgtata
gaaaataaagctattttcttttaaaaatgaataaattagttttggcctta
aggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82156414_82157581
seq2: B6Ng01-059K11.b_46_1188 (reverse)

seq1  ATAGAGGAATACAGCAGAAAAGAAAGACATTCAGGCAGGGTCCAGCACAC  50
      ||||||| |||| || ||||||||||  ||||  |||  ||||||||| |
seq2  ATAGAGG-ATACCGC-GAAAAGAAAG--ATTC-CGCA--GTCCAGCAC-C  42

seq1  CCAGGATGCAGAGACGGGCAGATTTCAGAGTTGGAGGTCAGCCTGGTCTC  100
      ||||||||| ||||||||| || ||||||||  || ||||| |||   | 
seq2  CCAGGATGC-GAGACGGGC-GA-TTCAGAGT--GA-GTCAG-CTG--TTT  83

seq1  CAGAGCGAGTTCCAGGATAGCTGAGGCTACACAGAAAAGCCCAGTCTAGC  150
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CAGAGCGAGTTCCAGAATAGCTGA-GCTACACAGAAAAGCCCAGTCTAGC  132

seq1  AAATGGGGGGCGTTGGGGGAGAGGAAGGGGAAAGAAAATGAAAAGAAGAA  200
      |||||||||||||  ||||||||  | |||||||||||||||||||||||
seq2  AAATGGGGGGCGT--GGGGAGAG--AAGGGAAAGAAAATGAAAAGAAGAA  178

seq1  CGGATTGGAGCTGGAGAAATGGCCCCAACTGCTAAGAGCATCGGTCTTCT  250
      |||||||||||| ||||||||  ||| |||||||||||||||||||||||
seq2  CGGATTGGAGCT-GAGAAATG--CCCCACTGCTAAGAGCATCGGTCTTCT  225

seq1  TTTCCTCAAGGACCCACGTTTAATTCCCAGCACCTACTTGATTTTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCCTCAAGGACCCACGTTTAATTCCCAGCACCTACTTGA-TTTTCCCA  274

seq1  GCTGTCTGCATTATCAATTCTAGGGCATCTCGCATCCTCACACATGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCATTATCAATTCTAGGGCATCTCGCATCCTCACACATGCAGG  324

seq1  CAAACCACCACATAAAATAAATAGTTTTTAAAATAAGGAAAATTATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACCACATAAAATAAATAGTTTTTAAAATAAGGAAAATTATTCAG  374

seq1  TTC-AAAATGCCTTCTTGTCAACAGTGATTGTCAAGCAATGAATGAAAGT  449
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATGCCTTCTTGTCAACAGTGATTGTCAAGCAATGAATGAAAGT  424

seq1  TTTATTTGAAGAAACACCTACATTATAGGGCTACACTGAGGAGGGGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAAGAAACACCTACATTATAGGGCTACACTGAGGAGGGGGAAT  474

seq1  AAATGCAGAGAAGAAGAATAAGCAGAACCAAAGAAACAGAACCTTGGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAGAAGAAGAATAAGCAGAACCAAAGAAACAGAACCTTGGGAC  524

seq1  TGAAGGTCATGGAAAATAAGAAAAGGGTTCATGTTAGCCTTCCAGAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCATGGAAAATAAGAAAAGGGTTCATGTTAGCCTTCCAGAACCA  574

seq1  GTGGTGATTTATGTCAAAGATAATTCAAAAAGGATAAGCAGGAGACAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATTTATGTCAAAGATAATTCAAAAAGGATAAGCAGGAGACAGAA  624

seq1  AGTCACTTGCAACAGCTATCTCAAGACAGTGCTAGAAGCACCAGTCAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGCAACAGCTATCTCAAGACAGTGCTAGAAGCACCAGTCAAAT  674

seq1  TGGAAGGTGTGAAAAAACAAGTTATCAAAGGCTTCAGATAGTATCTATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGTGAAAAAACAAGTTATCAAAGGCTTCAGATAGTATCTATAC  724

seq1  CCTGAAGTAATTTTGCTGAATTTATTGGTTTATGTGATGAAAGTAATAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTAATTTTGCTGAATTTATTGGTTTATGTGATGAAAGTAATAGG  774

seq1  GGAATTCTGAAATGGTGTCATATAAGCCGGGGAGGCTCCAGTTCTGTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGAAATGGTGTCATATAAGCCGGGGAGGCTCCAGTTCTGTGTC  824

seq1  AGAGTGTTTGCCTGGCACGCAGAACAAAACGATACGAAATAAAGCAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTTGCCTGGCACGCAGAACAAAACGATACGAAATAAAGCAGCAG  874

seq1  CAACAACAAAATATACAGGAGAGCTTTGTGAAGGATGAAGTCTTAAGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAATATACAGGAGAGCTTTGTGAAGGATGAAGTCTTAAGAAT  924

seq1  GTATAGGCGGAGAAGAGTCTAGTTGACAGGGAATTAATGGAGAGAAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGCGGAGAAGAGTCTAGTTGACAGGGAATTAATGGAGAGAAAAGT  974

seq1  GGTTATTGTTTGAATTTGTAGTCAGTGTACCTAGGTTGTTCAGGAAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTTTGAATTTGTAGTCAGTGTACCTAGGTTGTTCAGGAAAAGA  1024

seq1  AGGGTCCCAGGATGCTTTTATATATATATATATATATATATATATATATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCAGGATGCTTTTATATATATATATATATATATATATATATATA  1074

seq1  TATATATATGAATATATAAACACATTAGAATGACCTTAACTGAATGTGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGAATATATAAACACATTAGAATGACCTTAACTGAATGTGTT  1124

seq1  GAAAAGAGCTCTAGAATTC  1168
      |||||||||||||||||||
seq2  GAAAAGAGCTCTAGAATTC  1143

seq1: chr5_81964495_81965566
seq2: B6Ng01-059K11.g_70_1124

seq1  GAATTCAATGTGCCTCATAAGGTAGGGGCCAAAGATGCACAGACACGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGCCTCATAAGGTAGGGGCCAAAGATGCACAGACACGACC  50

seq1  ATGCCTGGTCCTGATGTATTAACCTTGAGGGAGCCAGGTGTCTATTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGTCCTGATGTATTAACCTTGAGGGAGCCAGGTGTCTATTGTTA  100

seq1  CTGAGAGAGTCTTAAACATCCCCCAGAATTTAGTTGGCAACACTCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGTCTTAAACATCCCCCAGAATTTAGTTGGCAACACTCAGATG  150

seq1  CATTTCTTTCTTTCTTCCATTAACAAATCTGTTTGCCAGTCAGGGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTCTTTCTTCCATTAACAAATCTGTTTGCCAGTCAGGGATTTA  200

seq1  AAAAAAATTATTATTCCTCAGATACTAGCCAGGAGGTCACATTGCCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTATTATTCCTCAGATACTAGCCAGGAGGTCACATTGCCCTCA  250

seq1  CAAGGGGAGGGCACAGTAGATGAGTTGTTACAGCTCGTTGTCCTTCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGGGCACAGTAGATGAGTTGTTACAGCTCGTTGTCCTTCATAC  300

seq1  TTCCTCCTCTTTAGGAGGTTACCTTTGTGGTGTCCTTTACTAAGGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCTTTAGGAGGTTACCTTTGTGGTGTCCTTTACTAAGGTATTC  350

seq1  AAAAGGCAGAGGGATTTTTTGCTTGTAATACTTCCTGAAAAGACCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGAGGGATTTTTTGCTTGTAATACTTCCTGAAAAGACCAAATT  400

seq1  GGTTGGTTTTTAAGCCAATTAATCTAAGAAGAGAACACCTGTCTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTTTAAGCCAATTAATCTAAGAAGAGAACACCTGTCTCTCCTT  450

seq1  AAATAATGAGTCCGATGTTTTCCCATGAATACATTTTGGGAAATAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAGTCCGATGTTTTCCCATGAATACATTTTGGGAAATAATGCT  500

seq1  GATCAGTGGAGCCATAATTCATTTCTAGTCATCTATTTCTTCCAATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGAGCCATAATTCATTTCTAGTCATCTATTTCTTCCAATTTGA  550

seq1  AACAAATAAAAGCTTCCTGGTCGCGAGGCTCCTGGGAAGAAAAAACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAAGCTTCCTGGTCGCGAGGCTCCTGGGAAGAAAAAACAAGC  600

seq1  TGATTGTTCTCTTGCCTGTGGAGATATTCTCCGTGAAGAGGAGCTCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTCTCTTGCCTGTGGAGATATTCTCCGTGAAGAGGAGCTCAGAT  650

seq1  GTACTTGGCAGTGATTGACTTGTTTAAAGACGAGGGTAGCAGTGTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGCAGTGATTGACTTGTTTAAAGACGAGGGTAGCAGTGTTAGAA  700

seq1  GAGGCACTTGTTCATTTTTAAGTCGCGGAGCCTAAATGAGGTAGACTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTTGTTCATTTTTAAGTCGCGGAGCCTAAATGAGGTAGACTGTT  750

seq1  AGAAGGCTCC-TTCAGTCTTCTGTCGTGTTTGC-TTGTGAACTAATGACC  798
      |||||||||| |||||||||||||||||||||| ||||| ||||||||||
seq2  AGAAGGCTCCTTTCAGTCTTCTGTCGTGTTTGCTTTGTG-ACTAATGACC  799

seq1  ATTCTGGGCGTAGATATTAACTGCAAGTTGTTCTGAAGAAACTCACTGCT  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCTGGGCGTAGATATTAACTGCAAGTTGTTCTGAAGAAACTC-CTGCT  848

seq1  GTTGCACGCATATGAATAACGCCTTATCTCTCAACTGCCTTTCACGCTAA  898
      ||||||||||||||||| |||||||||||||| ||||||||| |||||||
seq2  GTTGCACGCATATGAAT-ACGCCTTATCTCTC-ACTGCCTTT-ACGCTAA  895

seq1  AGCAGCTCAGGAAATTCCTATGCAATGAATTATTTTACATGAATAGTTTT  948
      ||||||||||||| ||||||||| |||||||||||||||||||| |||||
seq2  AGCAGCTCAGGAATTTCCTATGC-ATGAATTATTTTACATGAATTGTTTT  944

seq1  ATC-TCGGCCTACAGATGAGAAATTGGAGAAACGATTCACAGGATATTTC  997
      ||| |||||||| ||||||| ||||| || ||||||||||||||  ||||
seq2  ATCTTCGGCCTA-AGATGAG-AATTGAAG-AACGATTCACAGGAATTTTC  991

seq1  TGTACAGTAATAGAAAAATAATAGCTATTTTCTTTTTAAAAAATGAAATA  1047
      |||   || |||| ||||||| ||||||||||||||  |||||||||   
seq2  TGT--CGT-ATAG-AAAATAA-AGCTATTTTCTTTT--AAAAATGAA--T  1032

seq1  AAATAAGTTTTGTGCCCATAAGGTT  1072
      |||| |||||  || || |||||||
seq2  AAATTAGTTT--TGGCCTTAAGGTT  1055