BAC Information

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BAC

Clone NameB6Ng01-059M05
Chromosome5 (Build37)
Map Location 79,853,058 - 80,017,145
singlet/doubletdoublet
Overlap genenone
Upstream geneMthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M05.bB6Ng01-059M05.g
ACCDH880941DH880942
length9711,010
definitionDH880941|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M05, 5' end.DH880942|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,853,058 - 79,853,651)(80,016,123 - 80,017,145)
sequence
gaattccatcaaaccattgttaaaacttccaataggtaacctagcaatgc
aggatggcagagaaaccgtaggcaggcataacaagaatgagcctcttgca
aggttgtacaaccactctggaaatcagtctggcagttcctcagaaaattg
gacatagtactaccagaggatcctgcaatacctctcctgggcatatatcc
agaagatgtcccatccgttaagaaggacacatgctccactatgttcatag
cagccttatttataatagccagaagctggaaagaacccagatgcccctca
acagaggaatgggtacagaaaatgtggtacattacacaatggagtactac
tcagctattaaaaagaatgagtttatgaaattcctaagcaaatggatgaa
cctggagggcatcatcctgagtgagataacccaatcacaaaggaactcgc
acaatatgtactcactgataagtggatattagcccagaaacttaggatac
caaagatataagatacaatttgcaaaacacatgaaactcaagaagaacaa
agaccaaagtgtggacactttgccccttcttagaaatgggaacaaaatac
ccatggaaggagttacagacacaaaatttggagctgtgacgaaaggatgg
accatctagtgattgccatatccagggatccatcccaataatcagcttcc
aaacgctgacaccattgcatacactagcaagattttgctgaaaggaccca
gatgtagctgtctcttgtgagactatgctggggcctagcaaacacagaag
tggatgctcacagtcagctattggatgggtcacacggcccccaatggagg
agctagaggaagttcccaaggagctaaaggaactgcaaccctataggtgg
aacaacaatatgaactaaccagtaccccagagttcttgtctctagctgca
tatgtatcgaaagatggccta
gaattctggaaaacaattccctataacataaaatattaattaacttttta
ggaataaatttgtctcagacagaaaagatatcaacagtatatttaggaaa
aaatggaacactcatgaatatagagagatttttctcttgctccaagatta
acagaattaacgcaggtaagaatgggtatattatcaaatattatcaaaag
aatttaacagatatatgcaatctccactaatactcttttttatcctttct
tttatttacatttcaaatgttatctcccttcctggtttcccctctgaaaa
tcctccatttgacccccatctgcctgcctccaagagggtgcttccccacc
cacccactcccatcccactgccctacacatcaagccttcacagaacccag
ggcttcccttcccactgatgccagacaaggccatcctctactacatatac
agctagagccatgggtcccttcatttacattctttggttggtggtttatt
cccttgaagctttgggggggggtgtcttgttggttgatattgtaattcct
atggggctccaaacctcttcagctccttcagtccttcccctaactcctcc
attggttctcagtccaatggttggctgaaagaatccacatctgtattggt
cacgctctagcagatattcactacagaaattaaaaaaaaaaaaattagaa
gaagcagtccctgacaggaaaacaatgaccactgtacactaatgtctgat
ctcacttaatgatagtgagccatagatacaaaccatcatattttgtagct
agaatgatatctgtgcaacaatattaaatccataaatatatggcttttca
gattttgatgaaaatataaaacatatggaaaaagaccatctctttacaga
tgtagtatgaaaatctagatctaaagattttctactaaaaacgaaaaata
gtgataattattctaggtaataaacttatttctcattgtatatccggaaa
aattaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79853058_79853651
seq2: B6Ng01-059M05.b_45_638

seq1  GAATTCCATCAAACCATTGTTAAAACTTCCAATAGGTAACCTAGCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAACCATTGTTAAAACTTCCAATAGGTAACCTAGCAATGC  50

seq1  AGGATGGCAGAGAAACCGTAGGCAGGCATAACAAGAATGAGCCTCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCAGAGAAACCGTAGGCAGGCATAACAAGAATGAGCCTCTTGCA  100

seq1  AGGTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTG  150

seq1  GACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCATATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCATATATCC  200

seq1  AGAAGATGTCCCATCCGTTAAGAAGGACACATGCTCCACTATGTTCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTCCCATCCGTTAAGAAGGACACATGCTCCACTATGTTCATAG  250

seq1  CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA  300

seq1  ACAGAGGAATGGGTACAGAAAATGTGGTACATTACACAATGGAGTACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAATGGGTACAGAAAATGTGGTACATTACACAATGGAGTACTAC  350

seq1  TCAGCTATTAAAAAGAATGAGTTTATGAAATTCCTAAGCAAATGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATTAAAAAGAATGAGTTTATGAAATTCCTAAGCAAATGGATGAA  400

seq1  CCTGGAGGGCATCATCCTGAGTGAGATAACCCAATCACAAAGGAACTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGGCATCATCCTGAGTGAGATAACCCAATCACAAAGGAACTCGC  450

seq1  ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAC  500

seq1  CAAAGATATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAACAA  550

seq1  AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAATGGGAACA  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAATGGGAACA  594

seq1: chr5_80016123_80017145
seq2: B6Ng01-059M05.g_70_1079 (reverse)

seq1  TTTCTTTAATTTTTTCTGGATATATCAATGAGAAATAGGTTTTATTTATC  50
      ||||||  | |||||| ||||||| |||||||||||| | ||||||   |
seq2  TTTCTT--AATTTTTCCGGATATA-CAATGAGAAATAAG-TTTATT--AC  44

seq1  CTATGAATAATTTATTCACTATTTTTCCTTTTTTAGTAGAAAATCCTTAG  100
      ||| ||||||||   ||||||||||| | |||||||||||||||| ||||
seq2  CTA-GAATAATT--ATCACTATTTTT-CGTTTTTAGTAGAAAATCTTTAG  90

seq1  ATCTAGATTTTTCATACTACATCTGTTAAAGAGATTGTCTTTTTCCAATA  150
      ||||||| ||||||||||||||||| ||||||||| |||||||||| |||
seq2  ATCTAGA-TTTTCATACTACATCTG-TAAAGAGATGGTCTTTTTCC-ATA  137

seq1  TGTTTTATATTTTCATCAAAATCTG-AAAGCCATATATTTTATGGATTTA  199
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TGTTTTATATTTTCATCAAAATCTGAAAAGCCATATA-TTTATGGATTTA  186

seq1  ATATTGTTGCACAGATATCATTCTAGCTACAAAATATGATGGTTTGTATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGCACAGATATCATTCTAGCTACAAAATATGATGGTTTGTATC  236

seq1  TATGGCTCACTATCATTAAGTGAGATCAGACATTAGTGTACAGTGGTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCACTATCATTAAGTGAGATCAGACATTAGTGTACAGTGGTCAT  286

seq1  TGTTTTCCTGTCAGGGACTGCTTCTTCTAATTTTTTTTTTTTTAATTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGTCAGGGACTGCTTCTTCTAATTTTTTTTTTTTTAATTTCT  336

seq1  GTAGTGAATATCTGCTAGAGCGTGACCAATACAGATGTGGATTCTTTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATATCTGCTAGAGCGTGACCAATACAGATGTGGATTCTTTCAG  386

seq1  CCAACCATTGGACTGAGAACCAATGGAGGAGTTAGGGGAAGGACTGAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCATTGGACTGAGAACCAATGGAGGAGTTAGGGGAAGGACTGAAGG  436

seq1  AGCTGAAGAGGTTTGGAGCCCCATAGGAATTACAATATCAACCAACAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGAGGTTTGGAGCCCCATAGGAATTACAATATCAACCAACAAGA  486

seq1  CACCCCCCCCCAAAGCTTCAAGGGAATAAACCACCAACCAAAGAATGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCCAAAGCTTCAAGGGAATAAACCACCAACCAAAGAATGTAA  536

seq1  ATGAAGGGACCCATGGCTCTAGCTGTATATGTAGTAGAGGATGGCCTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGACCCATGGCTCTAGCTGTATATGTAGTAGAGGATGGCCTTGT  586

seq1  CTGGCATCAGTGGGAAGGGAAGCCCTGGGTTCTGTGAAGGCTTGATGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCAGTGGGAAGGGAAGCCCTGGGTTCTGTGAAGGCTTGATGTGT  636

seq1  AGGGCAGTGGGATGGGAGTGGGTGGGTGGGGAAGCACCCTCTTGGAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTGGGATGGGAGTGGGTGGGTGGGGAAGCACCCTCTTGGAGGCA  686

seq1  GGCAGATGGGGGTCAAATGGAGGATTTTCAGAGGGGAAACCAGGAAGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGGGGGTCAAATGGAGGATTTTCAGAGGGGAAACCAGGAAGGGA  736

seq1  GATAACATTTGAAATGTAAATAAAAGAAAGGATAAAAAAGAGTATTAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATTTGAAATGTAAATAAAAGAAAGGATAAAAAAGAGTATTAGTG  786

seq1  GAGATTGCATATATCTGTTAAATTCTTTTGATAATATTTGATAATATACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCATATATCTGTTAAATTCTTTTGATAATATTTGATAATATACC  836

seq1  CATTCTTACCTGCGTTAATTCTGTTAATCTTGGAGCAAGAGAAAAATCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACCTGCGTTAATTCTGTTAATCTTGGAGCAAGAGAAAAATCTC  886

seq1  TCTATATTCATGAGTGTTCCATTTTTTCCTAAATATACTGTTGATATCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTCATGAGTGTTCCATTTTTTCCTAAATATACTGTTGATATCTT  936

seq1  TTCTGTCTGAGACAAATTTATTCCTAAAAAGTTAATTAATATTTTATGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGAGACAAATTTATTCCTAAAAAGTTAATTAATATTTTATGTT  986

seq1  ATAGGGAATTGTTTTCCAGAATTC  1023
      ||||||||||||||||||||||||
seq2  ATAGGGAATTGTTTTCCAGAATTC  1010