BAC Information

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BAC

Clone NameB6Ng01-059O02
Chromosome5 (Build37)
Map Location 44,013,383 - 44,132,741
singlet/doubletdoublet
Overlap gene5730509K17Rik
Upstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik
Downstream geneFbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059O02.bB6Ng01-059O02.g
ACCDH881029DH881030
length906450
definitionDH881029|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O02, 5' end.DH881030|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,013,383 - 44,014,291)(44,132,286 - 44,132,741)
sequence
gaattctctgcaaaacagccccatctatagttggctgcatgcacttgtat
gtccttctcagatttaaccctgagctaaggcgagggcaaataggaacact
ctctccctggaccgtatttgcaccccagtggcatttgcagatcagctcca
aaacacatcaaatgtgttatacaagtgaagtgtcacaggaaaggaaaaaa
aaatgtaggaaaatttccactgccacttccatactgtggttcccaagaga
cacgttcacatgtttcttttcctgcatcatagtttctcacccttggcact
gatggctttggaacagatcatccatgttgggaggggatacctgcacattt
taggatgccctgcaacaccccctagcatctacccatagagacagaggaac
atcttctggctcataactatcagcagtgtcaaatgtccatgggtgataag
aaactgtccccagttgagaaccagttctccacactgttggaatgctgaca
ggtgtagcaacaaattagttaaaccaccaatttggctcccagcaggccgt
gcacacttcacgactagcttaatagtttggcacttttaaaactccctgca
gctgatcttcacaaaaccaagggcctctcctcccattgatggcttactag
gccatcctctgctacatatgcaactaaagacagagctctgggggtggggt
actggttagttcatattgttgttcctcccatagggttgcagaccccttta
gctccttgggtactttctcctctagtccttcattaggggccctgtgttcc
atctaatagatgactgtgagcatcctcttctgtatttgccaggtcccagt
gcagggaatacaaggccaggaagctggagtatgttgttggggagcaaggt
ggggga
cttcctactctgctgtgggtgtgtttgcatgtgcagggaggagtggggtg
ggagtgtttcatggtgcatacacctaagtgggacctaattgcctcttcaa
aaattttattttcaaatacttcatactagggaagaaagatttgctttgag
gttcaaggggcaagcgtgtaaggtgcaacatggtttttctgtcatagcca
tgccttagttgttttgctttttaaatcccctttgacatataaatatagtc
tttgttcatcctagcactatattattttcaaggctgtgccagtgtgtaag
tgcttgcttgccttgtttttttgtaattttatgagataacccagcatttg
ctaaattcaatgctgcagagttgtttgttcctctagacaagttgcaaaga
gttagtgtactaggtcttggagatgtcattctgctggacagaaggaagtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44013383_44014291
seq2: B6Ng01-059O02.b_43_948

seq1  GAATTCTCTGCAAAACAGCCCCATCTATAG-GGGCTGCATGCACTTGTAT  49
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAATTCTCTGCAAAACAGCCCCATCTATAGTTGGCTGCATGCACTTGTAT  50

seq1  GTCCTTCTCAGATTTAACCCTGAGCTAAGGCGAGGGCAAATAGGAACACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTCAGATTTAACCCTGAGCTAAGGCGAGGGCAAATAGGAACACT  100

seq1  CTCTCCCTGGACCGTATTTGCACCCCAGTGGCATTTGCAGATCAGCTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGGACCGTATTTGCACCCCAGTGGCATTTGCAGATCAGCTCCA  150

seq1  AAACACATCAAATGTGTTATACAAGTGAAGTGTCACAGGAAAGGAAAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCAAATGTGTTATACAAGTGAAGTGTCACAGGAAAGGAAAAAA  200

seq1  AAATGTAGGAAAATTTCCACTGCCACTTCCATACTGTGGTTCCCAAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGAAAATTTCCACTGCCACTTCCATACTGTGGTTCCCAAGAGA  250

seq1  CACGTTCACATGTTTCTTTTCCTGCATCATAGTTTCTCACCCTTGGCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCACATGTTTCTTTTCCTGCATCATAGTTTCTCACCCTTGGCACT  300

seq1  GATGGCTTTGGAACAGATCATCCATGTTGGGAGGGGATACCTGCACATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTGGAACAGATCATCCATGTTGGGAGGGGATACCTGCACATTT  350

seq1  TAGGATGCCCTGCAACACCCCCTAGCATCTACCCATAGAGACAGAGGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCCCTGCAACACCCCCTAGCATCTACCCATAGAGACAGAGGAAC  400

seq1  ATCTTCTGGCTCATAACTATCAGCAGTGTCAAATGTCCATGGGTGATAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGCTCATAACTATCAGCAGTGTCAAATGTCCATGGGTGATAAG  450

seq1  AAACTGTCCCCAGTTGAGAACCAGTTCTCCACACTGTTGGAATGCTGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCCCCAGTTGAGAACCAGTTCTCCACACTGTTGGAATGCTGACA  500

seq1  GGTGTAGCAACAAATTAGTTAAACCACCAATTTGGCTCCCAGCAGGCCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCAACAAATTAGTTAAACCACCAATTTGGCTCCCAGCAGGCCGT  550

seq1  GCACACTTCACGACTAGCTTAATAGTTTGGCACTTTTAAAACTCCCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTCACGACTAGCTTAATAGTTTGGCACTTTTAAAACTCCCTGCA  600

seq1  GCTGATCTTCACAAAACCAAGGGCCTCTCCTCCCATTGATGGCTTACTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTTCACAAAACCAAGGGCCTCTCCTCCCATTGATGGCTTACTAG  650

seq1  GCCATCCTCTGCTACATATGCAACTAAAGACAGAGCTCTGGGGGTGGGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCTGCTACATATGCAACTAAAGACAGAGCTCTGGGGGTGGGGT  700

seq1  ACTGGTTAGTTCATATTGTTGTTCCTCCCATAGGGTTGCAGACCCCTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAGTTCATATTGTTGTTCCTCCCATAGGGTTGCAGACCCCTTTA  750

seq1  GCTCCTTGGGTACTTTCTCCTCTAGGTCCTTCATTAGGGGCCCTGTGTTC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTCCTTGGGTACTTTCTCCTCTA-GTCCTTCATTAGGGGCCCTGTGTTC  799

seq1  CATCTAATAGATGACTGTGAGCATCCTCTTCTGTATTTGCCAGGTCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATAGATGACTGTGAGCATCCTCTTCTGTATTTGCCAGGTCCCAG  849

seq1  TGCAGGGGAATACCAGGGCCAGGAAGCTGGAGTAGGTGGGTTGGGGAGCA  899
      |||| ||||||| || |||||||||||||||||| ||  |||||||||||
seq2  TGCA-GGGAATA-CAAGGCCAGGAAGCTGGAGTATGT-TGTTGGGGAGCA  896

seq1  GGGTGGGGGA  909
       |||||||||
seq2  AGGTGGGGGA  906

seq1: chr5_44132286_44132741
seq2: B6Ng01-059O02.g_69_524 (reverse)

seq1  CACTTCCTTCTGTCCAGCAGAATGACATCTCCAAGACCTAGTACACTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTCTGTCCAGCAGAATGACATCTCCAAGACCTAGTACACTAAC  50

seq1  TCTTTGCAACTTGTCTAGAGGAACAAACAACTCTGCAGCATTGAATTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAACTTGTCTAGAGGAACAAACAACTCTGCAGCATTGAATTTAG  100

seq1  CAAATGCTGGGTTATCTCATAAAATTACAAAAAAACAAGGCAAGCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGGGTTATCTCATAAAATTACAAAAAAACAAGGCAAGCAAGCA  150

seq1  CTTACACACTGGCACAGCCTTGAAAATAATATAGTGCTAGGATGAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACACTGGCACAGCCTTGAAAATAATATAGTGCTAGGATGAACAAA  200

seq1  GACTATATTTATATGTCAAAGGGGATTTAAAAAGCAAAACAACTAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATTTATATGTCAAAGGGGATTTAAAAAGCAAAACAACTAAGGCA  250

seq1  TGGCTATGACAGAAAAACCATGTTGCACCTTACACGCTTGCCCCTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGACAGAAAAACCATGTTGCACCTTACACGCTTGCCCCTTGAAC  300

seq1  CTCAAAGCAAATCTTTCTTCCCTAGTATGAAGTATTTGAAAATAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCAAATCTTTCTTCCCTAGTATGAAGTATTTGAAAATAAAATTT  350

seq1  TTGAAGAGGCAATTAGGTCCCACTTAGGTGTATGCACCATGAAACACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGGCAATTAGGTCCCACTTAGGTGTATGCACCATGAAACACTCC  400

seq1  CACCCCACTCCTCCCTGCACATGCAAACACACCCACAGCAGAGTAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTCCTCCCTGCACATGCAAACACACCCACAGCAGAGTAGGAAG  450

seq1  GAATTC  456
      ||||||
seq2  GAATTC  456