BAC Information

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BAC

Clone NameB6Ng01-060D06
Chromosome5 (Build37)
Map Location 11,274,501 - 11,393,721
singlet/doubletdoublet
Overlap geneSpeer1-ps1, EG667956
Upstream geneLOC100041395, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949
Downstream geneLOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060D06.bB6Ng01-060D06.g
ACCDH881247DH881248
length1,1911,089
definitionDH881247|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D06, 5' end.DH881248|Mus musculus domesticus DNA, BAC clone: B6Ng01-060D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,274,501 - 11,275,724)(11,392,611 - 11,393,721)
sequence
gaattctacaggaaagttggggaaattggggaagcgctgagggagtgaaa
atatatgatccaaaaataatatatgaaaaattaataaaaaggtttaaaga
ataaacaagtgagcatgtttctaaatattaattaaagtctttgcatttaa
gacaacagttattcaatttaaaattaaccattttgtctcatccttgtatt
ggtctccttgctgtgttcagctagtacaggatgtaacatagtgccctttc
ctcatacacaggctgaaaaatattctgcaaaaatttctttcaagcagtgt
ttgaattgacagagtttggtaaacttaaaatttgtttcctcacagttctt
tgaaactaagttcttgatgtgtttctctatatattggttctagtagctga
taacttgtatgagaacggaataaagtgcaggttttatttcccctcagtgt
cctggagacgcaggtgtttatgtatcactgcccatatcatagtgttcctg
tgataatgtggtgtcaattggcagctatagaagcaattgtgctctaagag
ttgatttctgatgtctttatcaaaactaggactttacacccatgatagta
atttttatgatttggcttctccaatgcaaagtaaggggaatctgatttca
tgaaatcaatatagtttgctttaaacagctacaaagtagagatattggct
aagtgtggaaagccttaaacagtgatgggagcaggtgtgtcaggaagtaa
aagcaaaaaagagggctaggcaaaaagaatataaataaattttatgtgtt
gtataatatttgctatgtgaaagaaatgggagattaaaggattaactgga
ggtgagggcagtggacaataagtataataaataatagtcgggtaaaccaa
aactaagtacacatgaaaaactttgataggaaccagctaatagtaagcta
atctccaaatatgttaaattataaatgagcttgagaacttgttctgtatc
atgagctatgcagaccatttatcatgactatcaaaggcgaggctcaagaa
tgcctcctatattattcgtcaggcatatgaggaaggcttcaaaccaacag
attacactctcctatttctactatctatatgggtaagatagatctgtgga
atcacccacttggaggaattctagaaataattctatctcgc
gaattcccacaccttgattttgtagatatcaatgcattctttaattaaat
acttctttaaaatagtgaattttatactgattaccctggataatgcccag
atttcttatcagttagattgagaaatgcccattggactttcattgcatct
tgagtatactatttctgtcattgaaatagctttgcacatttgaattttta
attttgttcatcagaacctacaaactttctcatatttccgtgaaaatttg
gtaccagacagtatttctgcagctcacattcctgaactagaaattgatgt
aagcgattgtgatgcccatgactcctacgagagttgttcttatcctttac
tctcaaatttcataagatttagagataagacgagcaattatgaaataagc
acatcagacacagttttgtatttttatgaaaaagatgtttcaatggacta
tggatacacttgatccaaaatatgcaactgcaactttggtcagagaattg
tgagagatcagcttacagtgtagattctcatgtggatggaagatatgtga
cacacattccttaagtcatgcgcaaatgtgataacatacagtggtttata
agagaacattaaatgttgtgagttccttgcagataaagattgttccttat
tcatatatgtacatattacacacacagtatgtccctgaaaagttctttat
gatgaagttatgcttattgaatttgctgttttgagttatactacttcact
agagtgaatataggagtctgtaaacctaggtcagtgccatgcgtaggaat
cccatgaagagcttaataaaatatctcattttttctatgatattcttttt
ctatgtgacatagacgcttaattcaattaggaatgagttagcagtgtaaa
ataaaataatgtaaaaagaggaaaagatacagaaattttggttataaaat
taaaagtagcactagaaagaaaagtatatttatttaacattttagttttc
ttaataagaaatcttctttatttatattcaatgttatctctttctaggtt
tccctctgaaatcctctatcgctatcctctcccctgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11274501_11275724
seq2: B6Ng01-060D06.b_48_1238

seq1  GAATTCTACAGGAAAGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGAAAGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50

seq1  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100

seq1  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150

seq1  GACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200

seq1  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGATGTAACATAGTGCCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGATGTAACATAGTGCCCTTTC  250

seq1  CTCATACACAGGCTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGGCTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300

seq1  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350

seq1  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400

seq1  TAACTTGTATGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTATGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450

seq1  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500

seq1  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550

seq1  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600

seq1  ATTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGAATCTGATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGAATCTGATTTCA  650

seq1  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700

seq1  AAGTGTGGAAAGCCTTAAACAGTGATGGGAGCAGGTGTGTCAGGAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGAAAGCCTTAAACAGTGATGGGAGCAGGTGTGTCAGGAAGTAA  750

seq1  AAGCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAATTTTATGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAATTTTATGTGTT  800

seq1  GTATAATATTTGCTATGTGAAAGAAATGGGAGATTAAAGGATTAACTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATATTTGCTATGTGAAAGAAATGGGAGATTAAAGGATTAACTGGA  850

seq1  GGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTCGGGTAAACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTCGGGTAAACCAA  900

seq1  AACTAAGTACACATGAAAAAACTTGATAGGAACCAGCTAATTAGTAAGCT  950
      ||||||||||||||||||||  |||||||||||||||||| |||||||||
seq2  AACTAAGTACACATGAAAAACTTTGATAGGAACCAGCTAA-TAGTAAGCT  949

seq1  AATCTCCAAATATGTTTAAAAATATTAAATGAGCTTGAGAACTTGTTCTG  1000
      ||||||||||||||||   ||||  |||||||||||||||||||||||||
seq2  AATCTCCAAATATGTT---AAATTATAAATGAGCTTGAGAACTTGTTCTG  996

seq1  TATTCATGAGCCTATGCAGACACATTTATTCAATGACTATCACAAGGCGA  1050
      || ||||||| |||||||||| |||||||   |||||||||| |||||||
seq2  TA-TCATGAG-CTATGCAGAC-CATTTAT--CATGACTATCA-AAGGCGA  1040

seq1  GGCACAAG-ATGCCTCCCTATAATTTATTCGTCAGGCCATATGAGGAAGG  1099
      ||| |||| |||||| ||||||  |||||||||||| |||||||||||||
seq2  GGCTCAAGAATGCCT-CCTATA--TTATTCGTCAGG-CATATGAGGAAGG  1086

seq1  CTCCAAAACCACACAGATTACCACTCTCCTTATTTCCTTACCATATCTAT  1149
      || | |||||| |||||||| |||||||| ||||||  |||  |||||||
seq2  CTTC-AAACCA-ACAGATTA-CACTCTCC-TATTTC--TAC--TATCTAT  1128

seq1  ATGGTAAAGATGATTCTGCTGAAAATACCACCCACTTTTGGAAAGAAATT  1199
      ||||  |||||   ||||  ||    | |||||||||   | | |||  |
seq2  ATGGGTAAGATAGATCTGTGGA----ATCACCCACTT---GGAGGAA--T  1169

seq1  TCTAGAAATTTAATCTCTATCTCGC  1224
      ||||||||  |||| ||||||||||
seq2  TCTAGAAA--TAAT-TCTATCTCGC  1191

seq1: chr5_11392611_11393721
seq2: B6Ng01-060D06.g_67_1155 (reverse)

seq1  GAGCAGGGGGAGAGGGTAGCGGATAGAGGATTTTCAGAGGGGAAACTAGG  50
      ||||| ||||||||| |||| ||||||||| |||||||||| || |||| 
seq2  GAGCA-GGGGAGAGGATAGC-GATAGAGGA-TTTCAGAGGGAAACCTAG-  46

seq1  AAAGGAGATAACATTTGAAATATAAATAAAGAAGATATCTTATTAAAGAA  100
       || |||||||||||   |||||||||||||||||| ||||||| |||||
seq2  -AAAGAGATAACATT--GAATATAAATAAAGAAGATTTCTTATT-AAGAA  92

seq1  AAACCTTAAAAAATGTTAAATAAATATAACCTTTTCTTTTCTTAGTTGCT  150
      ||  ||   |||||||||||||||||||  |||||||||   ||| ||||
seq2  AA--CT---AAAATGTTAAATAAATATA--CTTTTCTTT--CTAG-TGCT  132

seq1  ACTTTTAATTTTATAACCAAAATTTCTGTTATCTTTTTCCTCTTTTTTAC  200
      |||||||||||||||||||||||||||| |||| |||||||| |||||||
seq2  ACTTTTAATTTTATAACCAAAATTTCTG-TATC-TTTTCCTC-TTTTTAC  179

seq1  ATTATTTTTATTTTACACTGCTAACTCATTCCTAATTGAATTAAGCGTCT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTA-TTTTATTTTACACTGCTAACTCATTCCTAATTGAATTAAGCGTCT  228

seq1  ATGTCACATAGAAAAAGAATATCATAGAAAAAATGAGATATTTTATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACATAGAAAAAGAATATCATAGAAAAAATGAGATATTTTATTAAG  278

seq1  CTCTTCATGGGATTCCTACGCATGGCACTGACCTAGGTTTACAGACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGGGATTCCTACGCATGGCACTGACCTAGGTTTACAGACTCCT  328

seq1  ATATTCACTCTAGTGAAGTAGTATAACTCAAAACAGCAAATTCAATAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTCTAGTGAAGTAGTATAACTCAAAACAGCAAATTCAATAAGC  378

seq1  ATAACTTCATCATAAAGAACTTTTCAGGGACATACTGTGTGTGTAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCATCATAAAGAACTTTTCAGGGACATACTGTGTGTGTAATATG  428

seq1  TACATATATGAATAAGGAACAATCTTTATCTGCAAGGAACTCACAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATGAATAAGGAACAATCTTTATCTGCAAGGAACTCACAACATT  478

seq1  TAATGTTCTCTTATAAACCACTGTATGTTATCACATTTGCGCATGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCTCTTATAAACCACTGTATGTTATCACATTTGCGCATGACTTA  528

seq1  AGGAATGTGTGTCACATATCTTCCATCCACATGAGAATCTACACTGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGTGTCACATATCTTCCATCCACATGAGAATCTACACTGTAAG  578

seq1  CTGATCTCTCACAATTCTCTGACCAAAGTTGCAGTTGCATATTTTGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCTCACAATTCTCTGACCAAAGTTGCAGTTGCATATTTTGGATC  628

seq1  AAGTGTATCCATAGTCCATTGAAACATCTTTTTCATAAAAATACAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATCCATAGTCCATTGAAACATCTTTTTCATAAAAATACAAAACT  678

seq1  GTGTCTGATGTGCTTATTTCATAATTGCTCGTCTTATCTCTAAATCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGATGTGCTTATTTCATAATTGCTCGTCTTATCTCTAAATCTTAT  728

seq1  GAAATTTGAGAGTAAAGGATAAGAACAACTCTCGTAGGAGTCATGGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAGAGTAAAGGATAAGAACAACTCTCGTAGGAGTCATGGGCAT  778

seq1  CACAATCGCTTACATCAATTTCTAGTTCAGGAATGTGAGCTGCAGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCGCTTACATCAATTTCTAGTTCAGGAATGTGAGCTGCAGAAATA  828

seq1  CTGTCTGGTACCAAATTTTCACGGAAATATGAGAAAGTTTGTAGGTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGTACCAAATTTTCACGGAAATATGAGAAAGTTTGTAGGTTCTG  878

seq1  ATGAACAAAATTAAAAATTCAAATGTGCAAAGCTATTTCAATGACAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAATTAAAAATTCAAATGTGCAAAGCTATTTCAATGACAGAAA  928

seq1  TAGTATACTCAAGATGCAATGAAAGTCCAATGGGCATTTCTCAATCTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATACTCAAGATGCAATGAAAGTCCAATGGGCATTTCTCAATCTAAC  978

seq1  TGATAAGAAATCTGGGCATTATCCAGGGTAATCAGTATAAAATTCACTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAAATCTGGGCATTATCCAGGGTAATCAGTATAAAATTCACTAT  1028

seq1  TTTAAAGAAGTATTTAATTAAAGAATGCATTGATATCTACAAAATCAAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGTATTTAATTAAAGAATGCATTGATATCTACAAAATCAAGG  1078

seq1  TGTGGGAATTC  1111
      |||||||||||
seq2  TGTGGGAATTC  1089